Iapp (islet amyloid polypeptide) - Rat Genome Database

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Gene: Iapp (islet amyloid polypeptide) Mus musculus
Analyze
Symbol: Iapp
Name: islet amyloid polypeptide
RGD ID: 10754
MGI Page MGI
Description: Predicted to enable hormone activity; identical protein binding activity; and lipid binding activity. Acts upstream of or within negative regulation of bone resorption; negative regulation of osteoclast differentiation; and sensory perception of pain. Located in extracellular space. Is expressed in embryo; pancreas; pancreas primordium; and pancreas trunk epithelium. Used to study type 2 diabetes mellitus. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus and type 2 diabetes mellitus. Orthologous to human IAPP (islet amyloid polypeptide).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: am; amylin; DAP; diabetes-associated peptide
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396142,244,151 - 142,249,546 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6142,244,149 - 142,249,687 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm386142,298,425 - 142,303,820 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6142,298,423 - 142,303,961 (+)Ensemblmm10GRCm38
MGSCv376142,246,945 - 142,252,340 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366142,255,650 - 142,261,039 (+)NCBIMGSCv36mm8
Celera6145,357,925 - 145,363,320 (+)NCBICelera
Cytogenetic Map6G2NCBI
cM Map673.81NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Islet amyloid formed from diabetes-associated peptide may be pathogenic in type-2 diabetes. Clark A, etal., Lancet. 1987 Aug 1;2(8553):231-4.
2. Ultrastructure of islet microcirculation, pericytes and the islet exocrine interface in the HIP rat model of diabetes. Hayden MR, etal., Exp Biol Med (Maywood). 2008 Sep;233(9):1109-23. Epub 2008 Jul 18.
3. Twenty-four-hour simultaneous subcutaneous Basal-bolus administration of insulin and amylin in adolescents with type 1 diabetes decreases postprandial hyperglycemia. Heptulla RA, etal., J Clin Endocrinol Metab. 2009 May;94(5):1608-11. Epub 2009 Feb 3.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Conservation of the sequence of islet amyloid polypeptide in five mammals is consistent with its putative role as an islet hormone. Nishi M, etal., Proc Natl Acad Sci U S A 1989 Aug;86(15):5738-42.
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Impaired hyperglycemia-induced delay in gastric emptying in patients with type 1 diabetes deficient for islet amyloid polypeptide. Woerle HJ, etal., Diabetes Care. 2008 Dec;31(12):2325-31.
13. Amyloid oligomers in diabetic and nondiabetic human pancreas. Zhao HL, etal., Transl Res. 2009 Jan;153(1):24-32. Epub 2008 Nov 19.
Additional References at PubMed
PMID:1423499   PMID:2666169   PMID:8076756   PMID:8495745   PMID:8690157   PMID:8692984   PMID:9278863   PMID:9584121   PMID:9753619   PMID:9838101   PMID:10078553   PMID:10230646  
PMID:10424881   PMID:10751203   PMID:10825208   PMID:11076772   PMID:11118007   PMID:11145110   PMID:11246872   PMID:11474116   PMID:11679429   PMID:11731221   PMID:11751075   PMID:11825903  
PMID:12049785   PMID:12086946   PMID:12477932   PMID:12609749   PMID:12637985   PMID:12921743   PMID:14693708   PMID:14729487   PMID:14970190   PMID:15031110   PMID:15243700   PMID:15489334  
PMID:15618358   PMID:15802374   PMID:15899941   PMID:15944193   PMID:16002530   PMID:16141072   PMID:16403520   PMID:16830202   PMID:16951258   PMID:17537793   PMID:17693256   PMID:18058910  
PMID:18554416   PMID:18694973   PMID:18723011   PMID:19843871   PMID:19875640   PMID:21267068   PMID:21343540   PMID:21589925   PMID:21677750   PMID:21695120   PMID:21734016   PMID:21873635  
PMID:21880149   PMID:21997794   PMID:22013016   PMID:23229548   PMID:23260145   PMID:24028418   PMID:24043895   PMID:24627476   PMID:24843557   PMID:25409149   PMID:25700985   PMID:25808537  
PMID:26209627   PMID:26483547   PMID:26655697   PMID:26752640   PMID:26786104   PMID:27393137   PMID:28765400   PMID:29066284   PMID:29250032   PMID:29372531   PMID:29467172   PMID:29936463  
PMID:29976617   PMID:30737030   PMID:30943041   PMID:32728889   PMID:34077719   PMID:35136064   PMID:35963866   PMID:36621763   PMID:38455055   PMID:38905124   PMID:39433955  


Genomics

Comparative Map Data
Iapp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396142,244,151 - 142,249,546 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6142,244,149 - 142,249,687 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm386142,298,425 - 142,303,820 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6142,298,423 - 142,303,961 (+)Ensemblmm10GRCm38
MGSCv376142,246,945 - 142,252,340 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366142,255,650 - 142,261,039 (+)NCBIMGSCv36mm8
Celera6145,357,925 - 145,363,320 (+)NCBICelera
Cytogenetic Map6G2NCBI
cM Map673.81NCBI
IAPP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381221,354,959 - 21,379,980 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1221,354,959 - 21,379,980 (+)Ensemblhg38GRCh38
GRCh371221,507,893 - 21,532,914 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361221,417,085 - 21,423,683 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341221,417,084 - 21,423,683NCBI
Celera1226,681,196 - 26,688,308 (+)NCBICelera
Cytogenetic Map12p12.1NCBI
HuRef1221,299,907 - 21,307,017 (+)NCBIHuRef
CHM1_11221,491,270 - 21,498,381 (+)NCBICHM1_1
T2T-CHM13v2.01221,233,632 - 21,258,654 (+)NCBIT2T-CHM13v2.0
Iapp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84176,968,097 - 176,975,363 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4176,968,097 - 176,975,363 (+)EnsemblGRCr8
mRatBN7.24175,237,107 - 175,244,373 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4175,237,115 - 175,242,920 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4181,532,318 - 181,537,233 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04177,316,585 - 177,321,500 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04175,937,142 - 175,942,057 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04176,509,863 - 176,517,903 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4176,510,696 - 176,516,083 (+)Ensemblrn6Rnor6.0
Rnor_5.04240,723,950 - 240,731,446 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44179,855,956 - 179,860,871 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4163,770,383 - 163,775,298 (+)NCBICelera
RGSC_v3.14180,100,696 - 180,106,512 (+)NCBI
RH 3.4 Map41043.4RGD
Cytogenetic Map4q44NCBI
Iapp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541316,835,037 - 16,840,682 (-)Ensembl
ChiLan1.0NW_00495541316,834,940 - 16,841,071 (-)NCBIChiLan1.0ChiLan1.0
IAPP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21075,425,109 - 75,432,306 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11275,421,507 - 75,428,704 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01264,918,000 - 64,925,191 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11267,520,986 - 67,528,103 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1267,520,986 - 67,528,103 (-)EnsemblpanPan2panpan1.1
IAPP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12726,295,481 - 26,299,967 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2726,295,481 - 26,299,967 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2720,156,535 - 20,161,021 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02726,621,265 - 26,625,751 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2726,621,265 - 26,625,751 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12726,484,470 - 26,488,955 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02726,462,824 - 26,467,310 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02719,861,411 - 19,865,898 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Iapp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494587,540,811 - 87,546,687 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365485,463,828 - 5,469,139 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365485,463,829 - 5,469,136 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IAPP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl552,046,573 - 52,050,446 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1552,046,570 - 52,051,475 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2555,323,381 - 55,327,437 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IAPP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11121,240,947 - 21,247,409 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1121,241,514 - 21,247,207 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606913,897,267 - 13,904,564 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Iapp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475217,584,225 - 17,593,693 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475217,528,214 - 17,594,622 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Iapp
312 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:250
Count of miRNA genes:231
Interacting mature miRNAs:246
Transcripts:ENSMUST00000041993, ENSMUST00000141583
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
10449437Pas15_mpulmonary adenoma susceptibility 15 (mouse)6128180868149588044Mouse
10449436Pas17_mpulmonary adenoma susceptibility 17 (mouse)6124334273145601739Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
1301084Bpq5_mblood pressure QTL 5 (mouse)Not determined6129330484149588044Mouse
14746990Manh61_mmandible shape 61 (mouse)6130156355149588044Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
10766452Sle23_msystematic lupus erythematosus susceptibility 23 (mouse)6128601582149588044Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
14746999Mancz6_mmandible centroid size 6 (mouse)6130156355149588044Mouse
1302089Wta2_mweight adult 2 (mouse)Not determined6125269523149588044Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
1301686Trmq1_mT cell ratio modifier QTL 1 (mouse)Not determined6129330484149588044Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
1301620Insq8_minsulin QTL 8 (mouse)Not determined6129534979149588044Mouse
12879916Shm5_msperm head morphology 5 (mouse)6132266532145601739Mouse
10053680Lith25_mlithogenic gene 25 (mouse)Not determined6128601582149588044Mouse
4141974Skmw14_mskeletal muscle weight 14 (mouse)Not determined6129330484149588044Mouse
15092047Wsigrme2_mweek six growth rate, maternal effect 2 (mouse)6140497205147252976Mouse
15092045Wngrme2_mweek nine growth rate, maternal effect 2 (mouse)6140497205147252976Mouse
1301820Mop1_mmorphine preference 1 (mouse)Not determined6132578005146330736Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1301027Hdlq12_mHDL QTL 12 (mouse)Not determined6128601582149588044Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
15092052Wsegrme2_mweek seven growth rate, maternal effect 2 (mouse)6140497205147252976Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
15092053Wegrme2_mweek eight growth rate, maternal effect 2 (mouse)6140445726147201498Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
1558959Eamcd2_mexperimental autoimmune myocarditis 2 (mouse)Not determined6129953954149588044Mouse
15092060Wfogrme1_mweek four growth rate, maternal effect 1 (mouse)6140497205147252976Mouse
15092061Wfigrme1_mweek five growth rate, maternal effect 1 (mouse)6140445726147201498Mouse
15092058Lgrme2_mlate growth rate, maternal effect 2 (mouse)6140497205147252976Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
15092056Mgrme1_mmid growth rate, maternal effect 1 (mouse)6140497205147252976Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse

Markers in Region
Iapp  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6G2UniSTS
cM Map662.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000041993   ⟹   ENSMUSP00000043956
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6142,244,149 - 142,249,687 (+)Ensembl
GRCm38.p6 Ensembl6142,298,423 - 142,303,961 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141583
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6142,244,173 - 142,244,792 (+)Ensembl
GRCm38.p6 Ensembl6142,298,447 - 142,299,066 (+)Ensembl
RefSeq Acc Id: NM_010491   ⟹   NP_034621
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396142,244,151 - 142,249,546 (+)NCBI
GRCm386142,298,425 - 142,303,820 (+)ENTREZGENE
MGSCv376142,246,945 - 142,252,340 (+)RGD
Celera6145,357,925 - 145,363,320 (+)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_034621 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA37874 (Get FASTA)   NCBI Sequence Viewer  
  AAH27527 (Get FASTA)   NCBI Sequence Viewer  
  BAA22051 (Get FASTA)   NCBI Sequence Viewer  
  EDL10633 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000043956
  ENSMUSP00000043956.3
GenBank Protein P12968 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_034621   ⟸   NM_010491
- Peptide Label: precursor
- UniProtKB: P12968 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000043956   ⟸   ENSMUST00000041993

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P12968-F1-model_v2 AlphaFold P12968 1-93 view protein structure

Promoters
RGD ID:6891420
Promoter ID:EPDNEW_M9161
Type:multiple initiation site
Name:Iapp_1
Description:Mus musculus islet amyloid polypeptide , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386142,298,428 - 142,298,488EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96382 AgrOrtholog
Ensembl Genes ENSMUSG00000041681 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000041993 ENTREZGENE
  ENSMUST00000041993.3 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.250.2190 UniProtKB/Swiss-Prot
InterPro Calcitonin-like UniProtKB/Swiss-Prot
  Calcitonin/adrenomedullin UniProtKB/Swiss-Prot
  Calcitonin_CS UniProtKB/Swiss-Prot
  Calcitonin_peptide-like UniProtKB/Swiss-Prot
  Pro-islet_amyloid_polypep UniProtKB/Swiss-Prot
KEGG Report mmu:15874 UniProtKB/Swiss-Prot
MGD MGI:96382 ENTREZGENE
NCBI Gene 15874 ENTREZGENE
PANTHER PTHR10505 UniProtKB/Swiss-Prot
  PTHR10505:SF4 UniProtKB/Swiss-Prot
Pfam Calc_CGRP_IAPP UniProtKB/Swiss-Prot
PharmGKB IAPP RGD
PhenoGen Iapp PhenoGen
PRINTS ISLETAMYLOID UniProtKB/Swiss-Prot
PROSITE CALCITONIN UniProtKB/Swiss-Prot
SMART CALCITONIN UniProtKB/Swiss-Prot
UniProt IAPP_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE