Htr1a (5-hydroxytryptamine (serotonin) receptor 1A) - Rat Genome Database

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Gene: Htr1a (5-hydroxytryptamine (serotonin) receptor 1A) Mus musculus
Analyze
Symbol: Htr1a
Name: 5-hydroxytryptamine (serotonin) receptor 1A
RGD ID: 10745
MGI Page MGI
Description: Enables G protein-coupled serotonin receptor activity. Involved in several processes, including behavioral fear response; regulation of serotonin secretion; and serotonin receptor signaling pathway. Acts upstream of or within gamma-aminobutyric acid signaling pathway. Predicted to be located in axon hillock. Predicted to be active in GABA-ergic synapse; dendrite; and presynaptic membrane. Is expressed in several structures, including central nervous system; exocrine gland; eye; genitourinary system; and intestine. Used to study anxiety disorder. Human ortholog(s) of this gene implicated in alcohol dependence; anxiety disorder (multiple); depressive disorder; substance abuse; and withdrawal disorder. Orthologous to human HTR1A (5-hydroxytryptamine receptor 1A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5-HT-1A; 5-HT1A receptor; 5-hydroxytryptamine receptor 1A; G-protein coupled receptor 18; Gpcr; Gpcr18; serotonin receptor 1A
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913105,580,040 - 105,584,630 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13105,580,147 - 105,584,630 (+)EnsemblGRCm39 Ensembl
GRCm3813105,443,693 - 105,448,133 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13105,443,639 - 105,448,122 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713106,233,773 - 106,238,213 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613106,564,148 - 106,568,501 (+)NCBIMGSCv36mm8
Celera13109,835,550 - 109,839,989 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1356.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(S)-nicotine  (EXP,ISO)
(Z)-chlorprothixene  (ISO)
1-(3-chlorophenyl)piperazine  (ISO)
1-bromopropane  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
3',5'-cyclic AMP  (ISO)
3,5,6-trichloro-2-pyridinol  (EXP)
3,5,6-trichloropyridine-2-one  (EXP)
3-bromo-N-[[(2S)-1-ethyl-2-pyrrolidinyl]methyl]-2,6-dimethoxybenzamide  (ISO)
3-phenoxybenzoic acid  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-fluoro-N-\{2-[4-(7-methoxynaphthalen-1-yl)piperazin-1-yl]ethyl\}benzamide hydrochloride  (ISO)
5-carboxamidotryptamine  (ISO)
8-OH-DPAT  (EXP,ISO)
aflatoxin B1  (ISO)
albiflorin  (ISO)
alverine  (ISO)
amitriptyline  (ISO)
ammonium chloride  (ISO)
apocynin  (EXP)
apomorphine  (ISO)
arachidonic acid  (ISO)
aripiprazole  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
Bifeprunox  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bucladesine  (ISO)
buspirone  (ISO)
Butylbenzyl phthalate  (EXP)
calcium atom  (ISO)
calcium(0)  (ISO)
cannabidiol  (EXP)
cannabidiolic acid  (ISO)
chlorpyrifos  (EXP,ISO)
clofibrate  (EXP)
clozapine  (ISO)
cocaine  (EXP,ISO)
colforsin daropate hydrochloride  (ISO)
compound 48/80  (ISO)
Cuprizon  (ISO)
curcumin  (ISO)
cyhalothrin  (ISO)
DDE  (EXP)
DDT  (EXP)
desipramine  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP)
dieldrin  (ISO)
diethyl phthalate  (EXP)
Diisodecyl phthalate  (EXP)
doxepin  (ISO)
ethanol  (EXP,ISO)
etoperidone  (ISO)
fluoxetine  (EXP,ISO)
Gastrodin  (ISO)
GDP  (ISO)
GTP  (ISO)
hydroquinone  (EXP)
imipramine  (ISO)
isotretinoin  (EXP)
lipopolysaccharide  (ISO)
loxapine  (ISO)
lurasidone hydrochloride  (ISO)
magnesium atom  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
medroxyprogesterone acetate  (ISO)
melittin  (ISO)
metformin  (ISO)
methamidophos  (EXP)
methamphetamine  (EXP,ISO)
methiothepin  (ISO)
methylphenidate  (ISO)
morphine  (ISO)
N,O-dimethyltyramine  (ISO)
N-[2-[4-(2-methoxyphenyl)-1-piperazinyl]ethyl]-N-(2-pyridinyl)cyclohexanecarboxamide  (EXP,ISO)
naltrexone  (EXP)
NAN 190 hydrobromide  (EXP,ISO)
nefazodone  (ISO)
nicotine  (EXP,ISO)
nitrates  (ISO)
ochratoxin A  (ISO)
oxidopamine  (ISO)
p-hydroxybenzyl alcohol  (ISO)
parathion  (ISO)
physostigmine  (ISO)
pindolol  (ISO)
reserpine  (EXP)
risperidone  (ISO)
rottlerin  (EXP)
scopolamine  (ISO)
serotonin  (EXP,ISO)
sertraline  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
spiperone  (ISO)
streptozocin  (ISO)
tacrolimus hydrate  (EXP)
tertatolol  (ISO)
thapsigargin  (ISO)
titanium dioxide  (EXP)
trazodone  (ISO)
vortioxetine  (ISO)
ziprasidone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
alfentanil pharmacodynamics pathway  (ISO)
bupivacaine pharmacodynamics pathway  (ISO)
buprenorphine pharmacodynamics pathway  (ISO)
chloroprocaine pharmacodynamics pathway  (ISO)
citalopram pharmacodynamics pathway  (ISO)
cocaine pharmacodynamics pathway  (ISO)
codeine and morphine pharmacodynamics pathway  (ISO)
desipramine pharmacodynamics pathway  (ISO)
diphenoxylate pharmacodynamics pathway  (ISO)
escitalopram pharmacodynamics pathway  (ISO)
ethylmorphine pharmacodynamics pathway  (ISO)
fentanyl pharmacodynamics pathway  (ISO)
fluoxetine pharmacodynamics pathway  (ISO)
heroin pharmacodynamics pathway  (ISO)
hydrocodone pharmacodynamics pathway  (ISO)
hydromorphone pharmacodynamics pathway  (ISO)
imipramine pharmacodynamics pathway  (ISO)
levacetylmethadol pharmacodynamics pathway  (ISO)
levobupivacaine phgarmacodynamics pathway  (ISO)
levorphanol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
mepivacaine pharmacodynamics pathway  (ISO)
methadone pharmacodynamics pathway  (ISO)
nalbuphine pharmacodynamics pathway  (ISO)
naloxone pharmacodynamics pathway  (ISO)
naltrexone pharmacodynamics pathway  (ISO)
nicotine pharmacodynamics pathway  (ISO)
oxybuprocaine pharmacodynamics pathway  (ISO)
oxycodone pharmacodynamics pathway  (ISO)
oxymorphone pharmacodynamics pathway  (ISO)
pentazocine pharmacodynamics pathway  (ISO)
prilocaine pharmacodynamics pathway  (ISO)
procaine pharmacodynamics pathway  (ISO)
remifentanil pharmacodynamics pathway  (ISO)
ropivacaine pharmacodynamics pathway  (ISO)
tramadol pharmacodynamics pathway  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Panic disorder and serotonergic genes (SLC6A4, HTR1A and HTR2A): Association and interaction with childhood trauma and parenting. Blaya C, etal., Neurosci Lett. 2010 Nov 12;485(1):11-5. Epub 2010 Sep 15.
2. Anti-depressant effects of Gastrodia elata Blume and its compounds gastrodin and 4-hydroxybenzyl alcohol, via the monoaminergic system and neuronal cytoskeletal remodeling. Chen WC, etal., J Ethnopharmacol. 2016 Apr 22;182:190-9. doi: 10.1016/j.jep.2016.02.001. Epub 2016 Feb 16.
3. The functional serotonin 1a receptor promoter polymorphism, rs6295, is associated with psychiatric illness and differences in transcription. Donaldson ZR, etal., Transl Psychiatry. 2016 Mar 1;6:e746. doi: 10.1038/tp.2015.226.
4. PET imaging of serotonin 1A receptor binding in depression. Drevets WC, etal., Biol Psychiatry. 1999 Nov 15;46(10):1375-87.
5. Local modulation of striatal glutamate efflux by serotonin 1A receptor stimulation in dyskinetic, hemiparkinsonian rats. Dupre KB, etal., Exp Neurol. 2011 Jun;229(2):288-99. Epub 2011 Feb 22.
6. Serotonin1A receptor acts during development to establish normal anxiety-like behaviour in the adult. Gross C, etal., Nature 2002 Mar 28;416(6879):396-400.
7. Elevated anxiety and antidepressant-like responses in serotonin 5-HT1A receptor mutant mice. Heisler LK, etal., Proc Natl Acad Sci U S A 1998 Dec 8;95(25):15049-54.
8. Clinical manifestation of alcohol withdrawal symptoms related to genetic polymorphisms of two serotonin receptors and serotonin transporter. Lee YS, etal., Eur Addict Res. 2009;15(1):39-46. doi: 10.1159/000173008. Epub 2008 Dec 2.
9. 5-HT1A autoreceptor in dorsal raphe nucleus mediates sensitization of conditioned place preference to cocaine in mice experienced with chronic pain. Li Y, etal., Neuroreport. 2019 Jun 12;30(9):681-687. doi: 10.1097/WNR.0000000000001260.
10. Acute ethanol exposure reduces serotonin receptor 1A internalization by increasing ubiquitination and degradation of β-arrestin2. Luessen DJ, etal., J Biol Chem. 2019 Sep 20;294(38):14068-14080. doi: 10.1074/jbc.RA118.006583. Epub 2019 Jul 31.
11. Opiate exposure and withdrawal dynamically regulate mRNA expression in the serotonergic dorsal raphe nucleus. Lunden JW and Kirby LG, Neuroscience. 2013 Dec 19;254:160-72. doi: 10.1016/j.neuroscience.2013.08.071. Epub 2013 Sep 20.
12. Serotonin involvement in Rhodiola rosea attenuation of nicotine withdrawal signs in rats. Mannucci C, etal., Phytomedicine. 2012 Sep 15;19(12):1117-24. doi: 10.1016/j.phymed.2012.07.001. Epub 2012 Aug 24.
13. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
14. MGDs mouse GO annotations MGD data from the GO Consortium
15. MGD IEA MGD IEA
16. Polymorphic variation at the serotonin 1-A receptor gene is associated with comorbid depression and generalized anxiety. Molina E, etal., Psychiatr Genet. 2011 Aug;21(4):195-201.
17. Buspirone improves 6-hydroxydopamine-induced catalepsy through stimulation of nigral 5-HT(1A) receptors in rats. Nayebi AM, etal., Pharmacol Rep. 2010 Mar-Apr;62(2):258-64.
18. 5-HT1A and α2 adrenergic receptor levels are associated with high anxiety-like patterns and impulsivity in selectively bred Long Evans rats. Niedzielak T, etal., Behav Brain Res. 2020 Apr 6;383:112522. doi: 10.1016/j.bbr.2020.112522. Epub 2020 Jan 30.
19. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
20. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
21. Downregulation of 5-HT1A receptors in rat hypothalamus and dentate gyrus after "binge" pattern cocaine administration. Perret G, etal., Synapse. 1998 Oct;30(2):166-71. doi: 10.1002/(SICI)1098-2396(199810)30:2<166::AID-SYN6>3.0.CO;2-A.
22. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
23. Receptor-genes cross-talk: effect of chronic 5-HT(1A) agonist 8-hydroxy-2-(di-n-propylamino) tetralin treatment on the expression of key genes in brain serotonin system and on behavior. Popova NK, etal., Neuroscience. 2010 Aug 11;169(1):229-35. doi: 10.1016/j.neuroscience.2010.04.044. Epub 2010 Apr 25.
24. Neuroprotective effects of HTR1A antagonist WAY-100635 on scopolamine-induced delirium in rats and underlying molecular mechanisms. Qiu Y, etal., BMC Neurosci. 2016 Oct 19;17(1):66. doi: 10.1186/s12868-016-0300-9.
25. Serotonin receptor 1A knockout: an animal model of anxiety-related disorder. Ramboz S, etal., Proc Natl Acad Sci U S A 1998 Nov 24;95(24):14476-81.
26. Mouse MP Annotation Import Pipeline RGD automated import pipeline
27. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
28. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
29. Effects of amperozide, 8-OH-DPAT, and FG 5974 on operant responding for ethanol. Roberts AJ, etal., Psychopharmacology (Berl). 1998 May;137(1):25-32. doi: 10.1007/s002130050589.
30. Repeated administration of methylphenidate produces reinforcement and downregulates 5-HT-1A receptor expression in the nucleus accumbens. Salman T, etal., Life Sci. 2019 Feb 1;218:139-146. doi: 10.1016/j.lfs.2018.12.046. Epub 2018 Dec 27.
31. Serotonin-1A receptors in the dorsal periaqueductal gray matter mediate the panicolytic-like effect of pindolol and paroxetine combination in the elevated T-maze. Sela VR, etal., Neurosci Lett. 2011 May 9;495(1):63-6. Epub 2011 Mar 21.
32. Serotonin receptor, SERT mRNA and correlations with symptoms in males with alcohol dependence and suicide. Thompson PM, etal., Acta Psychiatr Scand. 2012 Sep;126(3):165-74. doi: 10.1111/j.1600-0447.2011.01816.x. Epub 2011 Dec 19.
33. Ameliorative effect of gastrodin on 3,3'-iminodipropionitrile-induced memory impairment in rats. Wang X, etal., Neurosci Lett. 2015 May 6;594:40-5. doi: 10.1016/j.neulet.2015.03.049. Epub 2015 Mar 26.
34. Localization of 5-HT1A and 5-HT2A positive cells in the brainstems of control age-matched and Alzheimer individuals. Yeung LY, etal., Age (Dordr). 2010 Dec;32(4):483-95. Epub 2010 May 28.
35. Curcumin exerts antinociceptive effects in a mouse model of neuropathic pain: Descending monoamine system and opioid receptors are differentially involved. Zhao X, etal., Neuropharmacology. 2011 Sep 19.
36. Genome-wide significant association signals in IPO11-HTR1A region specific for alcohol and nicotine codependence. Zuo L, etal., Alcohol Clin Exp Res. 2013 May;37(5):730-9. doi: 10.1111/acer.12032. Epub 2012 Dec 6.
Additional References at PubMed
PMID:1427867   PMID:1676978   PMID:2781417   PMID:7719021   PMID:7789972   PMID:8254366   PMID:8288218   PMID:8626793   PMID:8828042   PMID:8833759   PMID:8930340   PMID:9119362  
PMID:9507085   PMID:9724773   PMID:9860934   PMID:10036246   PMID:10349636   PMID:10751426   PMID:10788764   PMID:10799679   PMID:11042159   PMID:11076861   PMID:11080193   PMID:11121072  
PMID:11158630   PMID:11164514   PMID:11217851   PMID:11297713   PMID:11299323   PMID:11376590   PMID:11483665   PMID:11504805   PMID:11504806   PMID:11504807   PMID:11827741   PMID:11827742  
PMID:11865336   PMID:11988231   PMID:12040075   PMID:12069904   PMID:12225695   PMID:12477932   PMID:12555283   PMID:12692162   PMID:12742250   PMID:12867255   PMID:12907793   PMID:12968128  
PMID:14576083   PMID:14604995   PMID:14754868   PMID:14966368   PMID:14994542   PMID:15009141   PMID:15254090   PMID:15469887   PMID:15519675   PMID:15574737   PMID:15688089   PMID:15920501  
PMID:15925428   PMID:16014712   PMID:16121945   PMID:16141072   PMID:16141073   PMID:16177041   PMID:16256213   PMID:16306396   PMID:16467535   PMID:16498683   PMID:16507009   PMID:16602821  
PMID:16707806   PMID:16824687   PMID:16836640   PMID:16841149   PMID:16884969   PMID:16925594   PMID:16981893   PMID:17022970   PMID:17056574   PMID:17081264   PMID:17228339   PMID:17250964  
PMID:17543467   PMID:17558402   PMID:17657435   PMID:17684732   PMID:17825441   PMID:18059438   PMID:18155098   PMID:18381076   PMID:18394726   PMID:18396339   PMID:18400315   PMID:18499474  
PMID:18516987   PMID:18550767   PMID:18565508   PMID:18599790   PMID:18853255   PMID:18853336   PMID:18930788   PMID:19008301   PMID:19353636   PMID:19409499   PMID:19409978   PMID:19607848  
PMID:19705758   PMID:19737523   PMID:19740091   PMID:19766402   PMID:19799970   PMID:19811773   PMID:19944672   PMID:20080794   PMID:20128798   PMID:20128812   PMID:20152112   PMID:20152131  
PMID:20163789   PMID:20345894   PMID:20368423   PMID:20413719   PMID:20506474   PMID:20561047   PMID:20633050   PMID:20643652   PMID:20702706   PMID:20728472   PMID:20811879   PMID:20818386  
PMID:20978350   PMID:20981413   PMID:21070242   PMID:21090244   PMID:21155902   PMID:21329554   PMID:21333660   PMID:21508226   PMID:21538661   PMID:21873635   PMID:22013016   PMID:22044428  
PMID:22357950   PMID:22464183   PMID:22531372   PMID:22569571   PMID:22575584   PMID:22622174   PMID:22640814   PMID:22669805   PMID:22809709   PMID:22815962   PMID:22884359   PMID:22936722  
PMID:22963996   PMID:23028768   PMID:23089640   PMID:23274507   PMID:23352985   PMID:23438369   PMID:23440396   PMID:23486969   PMID:23523560   PMID:23531840   PMID:23678112   PMID:23692315  
PMID:23701504   PMID:23902597   PMID:23907404   PMID:23997373   PMID:24050112   PMID:24158140   PMID:24194600   PMID:24381267   PMID:24421401   PMID:24548822   PMID:24586946   PMID:24706292  
PMID:24797332   PMID:24837029   PMID:24942324   PMID:24952961   PMID:24972638   PMID:25087754   PMID:25107925   PMID:25130282   PMID:25261781   PMID:25408355   PMID:25446927   PMID:25453842  
PMID:25642596   PMID:25727963   PMID:25759645   PMID:25775449   PMID:25781502   PMID:25956878   PMID:26049143   PMID:26080602   PMID:26324408   PMID:26389840   PMID:26477571   PMID:26660328  
PMID:26711860   PMID:26780922   PMID:26840837   PMID:26968113   PMID:26988806   PMID:27404655   PMID:27447833   PMID:27488351   PMID:27626380   PMID:27678414   PMID:27693660   PMID:27727398  
PMID:28031476   PMID:28147271   PMID:28251979   PMID:28483674   PMID:28485378   PMID:28591153   PMID:28700664   PMID:28777913   PMID:29101244   PMID:29203227   PMID:29305532   PMID:29548885  
PMID:29568676   PMID:30007418   PMID:30056125   PMID:30189184   PMID:30552180   PMID:30555297   PMID:30694044   PMID:30808545   PMID:31140276   PMID:31288061   PMID:31371425   PMID:31371490  
PMID:31863649   PMID:32360167   PMID:32386544   PMID:32433957   PMID:32561651   PMID:32594910   PMID:32831117   PMID:32956556   PMID:33233644   PMID:33352288   PMID:34070429   PMID:34232131  
PMID:34299230   PMID:35245487   PMID:35367298   PMID:35904324   PMID:36458257   PMID:36588734   PMID:36774552   PMID:37659688   PMID:37923121   PMID:38164795   PMID:38355793   PMID:38656873  
PMID:38906512   PMID:39085354  


Genomics

Comparative Map Data
Htr1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913105,580,040 - 105,584,630 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13105,580,147 - 105,584,630 (+)EnsemblGRCm39 Ensembl
GRCm3813105,443,693 - 105,448,133 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13105,443,639 - 105,448,122 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713106,233,773 - 106,238,213 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613106,564,148 - 106,568,501 (+)NCBIMGSCv36mm8
Celera13109,835,550 - 109,839,989 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1356.92NCBI
HTR1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38563,957,874 - 63,962,445 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl563,957,874 - 63,962,507 (-)EnsemblGRCh38hg38GRCh38
GRCh37563,253,701 - 63,258,272 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36563,292,034 - 63,293,302 (-)NCBINCBI36Build 36hg18NCBI36
Build 34563,292,033 - 63,293,302NCBI
Celera560,253,209 - 60,254,477 (-)NCBICelera
Cytogenetic Map5q12.3NCBI
HuRef560,210,553 - 60,212,797 (-)NCBIHuRef
CHM1_1563,255,560 - 63,257,804 (-)NCBICHM1_1
T2T-CHM13v2.0564,778,009 - 64,782,580 (-)NCBIT2T-CHM13v2.0
Htr1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8238,427,169 - 38,431,733 (+)NCBIGRCr8
mRatBN7.2236,693,462 - 36,698,026 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl236,694,174 - 36,695,442 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx243,823,087 - 43,824,355 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0241,881,727 - 41,882,995 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0236,737,009 - 36,738,277 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0236,246,628 - 36,247,896 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl236,246,628 - 36,247,896 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0255,362,662 - 55,363,930 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4236,434,518 - 36,435,786 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1236,354,886 - 36,356,155 (+)NCBI
Celera232,636,756 - 32,638,024 (+)NCBICelera
RH 3.4 Map2156.5RGD
Cytogenetic Map2q13NCBI
Htr1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554464,913,884 - 4,915,146 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554464,913,181 - 4,917,726 (+)NCBIChiLan1.0ChiLan1.0
HTR1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2449,960,948 - 49,964,784 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1548,114,114 - 48,118,414 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0550,045,266 - 50,049,636 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1551,691,853 - 51,696,257 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl551,692,416 - 51,693,684 (+)Ensemblpanpan1.1panPan2
HTR1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1250,005,277 - 50,006,548 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl250,002,740 - 50,006,548 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha246,962,303 - 46,963,574 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0250,490,014 - 50,491,285 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1247,550,689 - 47,551,960 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0248,341,999 - 48,343,270 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0249,236,031 - 49,237,302 (-)NCBIUU_Cfam_GSD_1.0
Htr1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213196,105,986 - 196,110,702 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364805,043,204 - 5,044,472 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364805,042,531 - 5,047,157 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HTR1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1642,478,923 - 42,484,304 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11642,479,812 - 42,484,365 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21645,547,917 - 45,550,733 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HTR1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1460,159,542 - 60,162,947 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl460,159,944 - 60,161,212 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660498,232,890 - 8,758,394 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Htr1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248155,816,601 - 5,820,864 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248155,817,196 - 5,821,197 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Htr1a
154 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:831
Count of miRNA genes:498
Interacting mature miRNAs:594
Transcripts:ENSMUST00000022235
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
12879496Fexq2_mfear expression QTL 2 (mouse)13100741519120883175Mouse
13513920Heal57_mwound healing/ regeneration 57 (mouse)13104450757107073998Mouse
13824989Pbsq1_mpercent broken sperm QTL 1 (mouse)13102136508112136534Mouse
4141102Sod1m_msuperoxide dismutase 1, soluble, modifier (mouse)Not determined99739968110699911Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87901985112431103Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
25394543Skmw79_mskeletal muscle weight 79, soleus (mouse)13103286625107663775Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
25394542Skmw80_mskeletal muscle weight 80, TA (mouse)13104397730107663775Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
25394545Skmw77_mskeletal muscle weight 77, EDL (mouse)13104421423107663775Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
25394544Skmw78_mskeletal muscle weight 78, gastroc (mouse)13104397730107663775Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
4141826Tbqt5_mtibia bone quality traits 5 (mouse)Not determined13103341617117043216Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse
14746974Manh75_mmandible shape 75 (mouse)1399386647120883175Mouse
4142400Tgq24_mtriglyceride QTL 24 (mouse)Not determined102602630120883175Mouse

Markers in Region
BF390878  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813105,446,020 - 105,446,188UniSTSGRCm38
MGSCv3713106,236,100 - 106,236,268UniSTSGRCm37
Celera13109,837,876 - 109,838,044UniSTS
Cytogenetic Map13D1UniSTS
cM Map1358.0UniSTS
PMC166422P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813105,444,839 - 105,445,287UniSTSGRCm38
MGSCv3713106,234,919 - 106,235,367UniSTSGRCm37
Celera13109,836,695 - 109,837,143UniSTS
Cytogenetic Map13D1UniSTS
cM Map1358.0UniSTS
Htr1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813105,446,445 - 105,446,549UniSTSGRCm38
MGSCv3713106,236,525 - 106,236,629UniSTSGRCm37
Celera13109,838,301 - 109,838,405UniSTS
Cytogenetic Map13D1UniSTS
cM Map1358.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000022235   ⟹   ENSMUSP00000022235
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13105,580,147 - 105,584,630 (+)Ensembl
GRCm38.p6 Ensembl13105,443,639 - 105,448,122 (+)Ensembl
RefSeq Acc Id: NM_008308   ⟹   NP_032334
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913105,580,040 - 105,584,630 (+)NCBI
GRCm3813105,443,693 - 105,448,133 (+)ENTREZGENE
MGSCv3713106,233,773 - 106,238,213 (+)RGD
Celera13109,835,550 - 109,839,989 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032334   ⟸   NM_008308
- UniProtKB: Q61617 (UniProtKB/Swiss-Prot),   Q60956 (UniProtKB/Swiss-Prot),   Q8BGS4 (UniProtKB/Swiss-Prot),   Q64264 (UniProtKB/Swiss-Prot),   Q8BZP1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000022235   ⟸   ENSMUST00000022235
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q64264-F1-model_v2 AlphaFold Q64264 1-421 view protein structure

Promoters
RGD ID:8681246
Promoter ID:EPDNEW_M18654
Type:single initiation site
Name:Htr1a_1
Description:Mus musculus 5-hydroxytryptamine receptor 1A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813105,443,766 - 105,443,826EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96273 AgrOrtholog
Ensembl Genes ENSMUSG00000021721 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000022235 ENTREZGENE
  ENSMUST00000022235.6 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 5HT1A_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  5HT_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15550 UniProtKB/Swiss-Prot
MGD MGI:96273 ENTREZGENE
NCBI Gene 15550 ENTREZGENE
PANTHER ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G-PROTEIN COUPLED RECEPTORS FAMILY 1 PROFILE DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB HTR1A RGD
PhenoGen Htr1a PhenoGen
PRINTS 5HT1ARECEPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  5HTRECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt 5HT1A_MOUSE UniProtKB/Swiss-Prot
  Q60956 ENTREZGENE
  Q61617 ENTREZGENE
  Q64264 ENTREZGENE
  Q8BGS4 ENTREZGENE
  Q8BZP1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q60956 UniProtKB/Swiss-Prot
  Q61617 UniProtKB/Swiss-Prot
  Q8BGS4 UniProtKB/Swiss-Prot