Gata1 (GATA binding protein 1) - Rat Genome Database

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Gene: Gata1 (GATA binding protein 1) Mus musculus
Analyze
Symbol: Gata1
Name: GATA binding protein 1
RGD ID: 10621
MGI Page MGI
Description: Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; p53 binding activity; and transcription coactivator binding activity. Involved in platelet aggregation; regulation of definitive erythrocyte differentiation; and regulation of macromolecule biosynthetic process. Acts upstream of or within several processes, including hemopoiesis; positive regulation of osteoblast proliferation; and regulation of primitive erythrocyte differentiation. Located in nucleus. Is expressed in several structures, including alimentary system; central nervous system; early conceptus; genitourinary system; and mesenchyme derived from lateral plate. Used to study myelodysplastic syndrome; myelofibrosis; and thrombocytopenia. Human ortholog(s) of this gene implicated in several diseases, including X-linked recessive disease (multiple); beta thalassemia; colon adenocarcinoma; depressive disorder; and hematologic cancer (multiple). Orthologous to human GATA1 (GATA binding protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: eryf1; erythroid transcription factor; Gata; Gata-1; GATA-binding factor 1; GATA-binding protein 1; Gf-1; NF-E1 DNA-binding protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,825,504 - 7,842,844 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,825,499 - 7,844,310 (-)EnsemblGRCm39 Ensembl
GRCm38X7,959,260 - 7,976,663 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,959,260 - 7,978,071 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X7,536,386 - 7,544,941 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X7,116,219 - 7,124,774 (-)NCBIMGSCv36mm8
CeleraX3,501,753 - 3,509,992 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.59NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-octadec-9-enoylglycero-3-phosphate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butoxyethanol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
aclacinomycin A  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
anagrelide  (ISO)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzene-1,2,4-triol  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
butyric acid  (ISO)
cadmium atom  (EXP)
calcium atom  (ISO)
calcium(0)  (ISO)
capsaicin  (EXP)
carbon nanotube  (EXP)
catechol  (ISO)
CGP 52608  (ISO)
Chebulinic acid  (ISO)
chromium(6+)  (ISO)
cobalt dichloride  (ISO)
diarsenic trioxide  (ISO)
doxorubicin  (ISO)
fenvalerate  (ISO)
genistein  (EXP)
gentamycin  (ISO)
hemin  (ISO)
hydroquinone  (ISO)
L-ascorbic acid  (ISO)
lithium chloride  (EXP)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (EXP)
N-acetyl-L-cysteine  (ISO)
N-ethyl-N-nitrosourea  (EXP)
nitrofen  (ISO)
oxaliplatin  (ISO)
PCB138  (EXP)
perfluorohexanesulfonic acid  (EXP)
phenol  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pomalidomide  (ISO)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP)
Tellimagrandin I  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
animal organ regeneration  (IEA,ISO)
basophil differentiation  (IEA)
bone mineralization  (IMP)
cell development  (IMP)
cell fate commitment  (IBA)
cell population proliferation  (IMP)
cell-cell signaling  (IMP)
cellular response to cAMP  (IEA,ISO)
cellular response to follicle-stimulating hormone stimulus  (IEA,ISO)
cellular response to lipopolysaccharide  (IEA,ISO)
dendritic cell differentiation  (IDA)
embryonic hemopoiesis  (IMP)
eosinophil differentiation  (ISO)
eosinophil fate commitment  (IEA,ISO)
erythrocyte development  (IEA,ISO)
erythrocyte differentiation  (IDA,IGI,IMP)
homeostasis of number of cells within a tissue  (IGI)
in utero embryonic development  (IMP)
male gonad development  (ISO)
megakaryocyte differentiation  (IDA,IGI,IMP,ISO)
myeloid cell apoptotic process  (IMP)
myeloid cell differentiation  (IMP)
negative regulation of apoptotic process  (ISO)
negative regulation of bone mineralization  (IMP)
negative regulation of cell population proliferation  (IMP)
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand  (IEA,ISO)
negative regulation of myeloid cell apoptotic process  (IMP)
negative regulation of transcription by RNA polymerase II  (IBA,IDA,IGI,ISO)
osteoblast proliferation  (IMP)
platelet aggregation  (IMP,ISO)
platelet formation  (IMP,ISO)
positive regulation of cytosolic calcium ion concentration  (IEA,ISO)
positive regulation of DNA-templated transcription  (IDA,ISO)
positive regulation of erythrocyte differentiation  (IEA,ISO)
positive regulation of mast cell degranulation  (IEA,ISO)
positive regulation of osteoblast proliferation  (IMP)
positive regulation of peptidyl-tyrosine phosphorylation  (ISO)
positive regulation of transcription by RNA polymerase II  (IBA,IDA,IGI,IMP,ISO)
primitive erythrocyte differentiation  (IMP)
regulation of definitive erythrocyte differentiation  (IDA,ISO)
regulation of glycoprotein biosynthetic process  (IMP,ISO)
regulation of primitive erythrocyte differentiation  (IGI)
Sertoli cell development  (IEA,ISO)
transcription by RNA polymerase II  (IDA)

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal bone marrow cell morphology/development  (IAGP)
abnormal bone marrow cell number  (IAGP)
abnormal bone marrow morphology  (IAGP)
abnormal bronchiole morphology  (IAGP)
abnormal common myeloid progenitor cell morphology  (IAGP)
abnormal definitive hematopoiesis  (IAGP)
abnormal embryonic erythropoiesis  (IAGP)
abnormal erythrocyte morphology  (IAGP)
abnormal erythroid progenitor cell morphology  (IAGP)
abnormal erythropoiesis  (IAGP)
abnormal hematocrit  (IAGP)
abnormal hematopoietic system physiology  (IAGP)
abnormal hemostasis  (IAGP)
abnormal iron level  (IAGP)
abnormal leukocyte cell number  (IAGP)
abnormal liver morphology  (IAGP)
abnormal megakaryocyte differentiation  (IAGP)
abnormal megakaryocyte morphology  (IAGP)
abnormal megakaryocyte progenitor cell morphology  (IAGP)
abnormal mononuclear cell morphology  (IAGP)
abnormal myelopoiesis  (IAGP)
abnormal physiological response to xenobiotic  (IAGP)
abnormal platelet morphology  (IAGP)
abnormal platelet shape  (IAGP)
abnormal proerythroblast morphology  (IAGP)
abnormal respiratory system physiology  (IAGP)
abnormal skin physiology  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal spleen red pulp morphology  (IAGP)
abnormal stress erythropoiesis  (IAGP)
abnormal thrombopoiesis  (IAGP)
absent vitelline blood vessels  (IAGP)
anemia  (IAGP)
anisocytosis  (IAGP)
autoimmune response  (IAGP)
decreased bone marrow cell number  (IAGP)
decreased circulating interleukin-13 level  (IAGP)
decreased circulating interleukin-4 level  (IAGP)
decreased embryo size  (IAGP)
decreased eosinophil cell number  (IAGP)
decreased erythrocyte cell number  (IAGP)
decreased erythroid progenitor cell number  (IAGP)
decreased fetal size  (IAGP)
decreased hematocrit  (IAGP)
decreased hemoglobin content  (IAGP)
decreased lymphocyte cell number  (IAGP)
decreased spleen red pulp amount  (IAGP)
decreased spleen white pulp amount  (IAGP)
decreased survivor rate  (IAGP)
embryo tissue necrosis  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
enlarged pericardium  (IAGP)
enlarged spleen  (IAGP)
extramedullary hematopoiesis  (IAGP)
impaired hematopoiesis  (IAGP)
increased bone ossification  (IAGP)
increased bone trabecula number  (IAGP)
increased compact bone volume  (IAGP)
increased erythroid progenitor cell number  (IAGP)
increased leukocyte cell number  (IAGP)
increased mean platelet volume  (IAGP)
increased megakaryocyte cell number  (IAGP)
increased monocyte cell number  (IAGP)
increased neutrophil cell number  (IAGP)
increased number of Howell-Jolly bodies  (IAGP)
increased osteoblast cell number  (IAGP)
increased osteoclast cell number  (IAGP)
increased spleen weight  (IAGP)
increased splenocyte number  (IAGP)
increased trabecular bone volume  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
liver hypoplasia  (IAGP)
myelofibrosis  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
pale liver  (IAGP)
pale spleen  (IAGP)
pale yolk sac  (IAGP)
pallor  (IAGP)
poikilocytosis  (IAGP)
polychromatophilia  (IAGP)
polyploidy  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
small liver  (IAGP)
thrombocytopenia  (IAGP)
thrombocytosis  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Human lung tumor FOXP3+ Tregs upregulate four "Treg-locking" transcription factors. Akimova T, etal., JCI Insight. 2017 Aug 17;2(16). pii: 94075. doi: 10.1172/jci.insight.94075. eCollection 2017 Aug 17.
2. Ham-2 corrects the class I antigen-processing defect in RMA-S cells. Attaya M, etal., Nature 1992 Feb 13;355(6361):647-9.
3. Perturbation of fetal hematopoiesis in a mouse model of Down syndrome's transient myeloproliferative disorder. Birger Y, etal., Blood. 2013 Aug 8;122(6):988-98. doi: 10.1182/blood-2012-10-460998. Epub 2013 May 29.
4. Overexpression of human GATA-1 and GATA-2 interferes with spine formation and produces depressive behavior in rats. Choi M, etal., PLoS One. 2014 Oct 23;9(10):e109253. doi: 10.1371/journal.pone.0109253. eCollection 2014.
5. GATA-1 and GATA-2 gene expression is related to the severity of dysplasia in myelodysplastic syndrome. Fadilah SA, etal., Leukemia. 2002 Aug;16(8):1563-5.
6. Platelet characteristics in patients with X-linked macrothrombocytopenia because of a novel GATA1 mutation. Freson K, etal., Blood. 2001 Jul 1;98(1):85-92.
7. Mutations in GATA1 in both transient myeloproliferative disorder and acute megakaryoblastic leukemia of Down syndrome. Greene ME, etal., Blood Cells Mol Dis. 2003 Nov-Dec;31(3):351-6.
8. Decreased expression of synapse-related genes and loss of synapses in major depressive disorder. Kang HJ, etal., Nat Med. 2012 Aug 12. doi: 10.1038/nm.2886.
9. [Expression of GATA-1 and GATA-2 in the bone marrow of patients with Monge's disease]. Li JP, etal., Zhonghua Xue Ye Xue Za Zhi. 2007 Aug;28(8):537-40.
10. [Influence of HIF- 2α on the expression of GATA- 1 in bone marrow CD71(+) cell of high altitude polycythemia rat model]. Liu F, etal., Zhonghua Xue Ye Xue Za Zhi. 2016 Aug 14;37(8):696-701. doi: 10.3760/cma.j.issn.0253-2727.2016.08.013.
11. [Effects of yisui shengxue granules on expressions of alpha-hemoglobin stabilizing protein and erythroid transcription factor GATA-1 mRNAs in bone marrow of patients with beta-thalassemia]. Liu YM, etal., Zhong Xi Yi Jie He Xue Bao. 2006 May;4(3):247-50.
12. A mutation in the translation initiation codon of Gata-1 disrupts megakaryocyte maturation and causes thrombocytopenia. Majewski IJ, etal., Proc Natl Acad Sci U S A. 2006 Sep 19;103(38):14146-51. Epub 2006 Sep 11.
13. GATA-1 transcription factor is up-regulated in bone marrow hematopoietic progenitor CD34(+) and erythroid CD71(+) cells in myelodysplastic syndromes. Maratheftis CI, etal., Am J Hematol. 2007 Oct;82(10):887-92.
14. X-linked thrombocytopenia caused by a novel mutation of GATA-1. Mehaffey MG, etal., Blood. 2001 Nov 1;98(9):2681-8.
15. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
16. MGDs mouse GO annotations MGD data from the GO Consortium
17. MGD IEA MGD IEA
18. Familial dyserythropoietic anaemia and thrombocytopenia due to an inherited mutation in GATA1. Nichols KE, etal., Nat Genet. 2000 Mar;24(3):266-70.
19. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
20. Decreased mRNA expression of GATA1 and GATA2 is associated with tumor aggressiveness and poor outcome in clear cell renal cell carcinoma. Peters I, etal., Target Oncol. 2015 Jun;10(2):267-75. doi: 10.1007/s11523-014-0335-8. Epub 2014 Sep 19.
21. Mouse MP Annotation Import Pipeline RGD automated import pipeline
22. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
23. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
24. The expression pattern of erythrocyte/megakaryocyte-related transcription factors GATA-1 and the stem cell leukemia gene correlates with hematopoietic differentiation and is associated with outcome of acute myeloid leukemia. Shimamoto T, etal., Blood. 1995 Oct 15;86(8):3173-80.
25. Leukemogenesis caused by incapacitated GATA-1 function. Shimizu R, etal., Mol Cell Biol. 2004 Dec;24(24):10814-25.
26. Abnormalities of GATA-1 in megakaryocytes from patients with idiopathic myelofibrosis. Vannucchi AM, etal., Am J Pathol. 2005 Sep;167(3):849-58.
27. Development of myelofibrosis in mice genetically impaired for GATA-1 expression (GATA-1(low) mice). Vannucchi AM, etal., Blood. 2002 Aug 15;100(4):1123-32.
28. A pathobiologic pathway linking thrombopoietin, GATA-1, and TGF-beta1 in the development of myelofibrosis. Vannucchi AM, etal., Blood. 2005 May 1;105(9):3493-501. Epub 2005 Jan 21.
29. X-linked thrombocytopenia with thalassemia from a mutation in the amino finger of GATA-1 affecting DNA binding rather than FOG-1 interaction. Yu C, etal., Blood. 2002 Sep 15;100(6):2040-5.
30. GATA1 promotes colorectal cancer cell proliferation, migration and invasion via activating AKT signaling pathway. Yu J, etal., Mol Cell Biochem. 2019 Jul;457(1-2):191-199. doi: 10.1007/s11010-019-03523-w. Epub 2019 May 9.
Additional References at PubMed
PMID:1297648   PMID:1302015   PMID:1379347   PMID:1744088   PMID:1987478   PMID:2004781   PMID:2276623   PMID:2725678   PMID:7568177   PMID:7568185   PMID:7596435   PMID:7613037  
PMID:7624372   PMID:7753195   PMID:7830794   PMID:7849405   PMID:7867497   PMID:7896801   PMID:7924983   PMID:7926723   PMID:8017775   PMID:8157699   PMID:8180787   PMID:8188251  
PMID:8195185   PMID:8206977   PMID:8431636   PMID:8464479   PMID:8499630   PMID:8524811   PMID:8530041   PMID:8562971   PMID:8628290   PMID:8666397   PMID:8799165   PMID:8835523  
PMID:8901585   PMID:8921395   PMID:9028937   PMID:9139715   PMID:9192642   PMID:9230307   PMID:9233806   PMID:9324354   PMID:9427697   PMID:9553047   PMID:9576834   PMID:9581981  
PMID:9590173   PMID:9636081   PMID:9639506   PMID:9657742   PMID:9716588   PMID:9730605   PMID:9769172   PMID:9787185   PMID:9811459   PMID:9811585   PMID:9859212   PMID:10208738  
PMID:10212985   PMID:10216081   PMID:10349636   PMID:10391218   PMID:10430179   PMID:10438528   PMID:10462413   PMID:10529424   PMID:10562540   PMID:10611250   PMID:10773455   PMID:10813843  
PMID:10857745   PMID:10922068   PMID:11040213   PMID:11042159   PMID:11076861   PMID:11094092   PMID:11136972   PMID:11159515   PMID:11217851   PMID:11301191   PMID:11342429   PMID:11566888  
PMID:11724781   PMID:11861504   PMID:12023274   PMID:12041667   PMID:12045236   PMID:12045237   PMID:12077323   PMID:12213678   PMID:12356738   PMID:12379744   PMID:12393529   PMID:12466851  
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PMID:15016648   PMID:15123623   PMID:15167914   PMID:15173587   PMID:15175249   PMID:15215894   PMID:15234987   PMID:15261829   PMID:15265794   PMID:15292068   PMID:15297311   PMID:15344908  
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PMID:21873635   PMID:21911838   PMID:21989988   PMID:22025678   PMID:22058113   PMID:22068055   PMID:22131328   PMID:22164220   PMID:22180658   PMID:22207202   PMID:22235304   PMID:22260730  
PMID:22279059   PMID:22325351   PMID:22354171   PMID:22357756   PMID:22383799   PMID:22390417   PMID:22393026   PMID:22416124   PMID:22426104   PMID:22535663   PMID:22556427   PMID:22771118  
PMID:22778136   PMID:22835905   PMID:22863011   PMID:22901805   PMID:22961053   PMID:22983445   PMID:22988301   PMID:22988430   PMID:23112860   PMID:23122290   PMID:23285212   PMID:23300469  
PMID:23335373   PMID:23359245   PMID:23380710   PMID:23462118   PMID:23475960   PMID:23519611   PMID:23563310   PMID:23565059   PMID:23582327   PMID:23630966   PMID:23637336   PMID:23670593  
PMID:23716700   PMID:23717580   PMID:23732910   PMID:23752044   PMID:23840778   PMID:23863621   PMID:23890289   PMID:23911012   PMID:23936136   PMID:23959865   PMID:24021675   PMID:24048893  
PMID:24118212   PMID:24146773   PMID:24167252   PMID:24245781   PMID:24297871   PMID:24309470   PMID:24379296   PMID:24407241   PMID:24415953   PMID:24493804   PMID:24553180   PMID:24615013  
PMID:24713170   PMID:24745334   PMID:24891522   PMID:24906147   PMID:24906148   PMID:25043722   PMID:25071163   PMID:25205203   PMID:25429072   PMID:25516969   PMID:25535330   PMID:25609427  
PMID:25622543   PMID:25668066   PMID:25755285   PMID:25769044   PMID:25790231   PMID:25802403   PMID:25806513   PMID:25870109   PMID:25952549   PMID:25961454   PMID:25995324   PMID:26147683  
PMID:26166573   PMID:26205961   PMID:26296469   PMID:26303528   PMID:26439305   PMID:26447946   PMID:26503782   PMID:26680303   PMID:26850094   PMID:26951334   PMID:26992433   PMID:27043410  
PMID:27118491   PMID:27152938   PMID:27155222   PMID:27215385   PMID:27239041   PMID:27273006   PMID:27411635   PMID:27432280   PMID:27548519   PMID:27582256   PMID:27592711   PMID:27621211  
PMID:27713415   PMID:27748371   PMID:27815426   PMID:27891580   PMID:28002407   PMID:28065741   PMID:28069743   PMID:28077488   PMID:28108297   PMID:28137851   PMID:28240607   PMID:28264883  
PMID:28302646   PMID:28355561   PMID:28358362   PMID:28405615   PMID:28515227   PMID:28522827   PMID:28566277   PMID:28622305   PMID:28670633   PMID:28754914   PMID:28765368   PMID:28769105  
PMID:28783681   PMID:28842839   PMID:28869965   PMID:28910278   PMID:28935682   PMID:29099969   PMID:29197504   PMID:29244083   PMID:29298288   PMID:29408805   PMID:29435140   PMID:29442367  
PMID:29442374   PMID:29467297   PMID:29580867   PMID:29898395   PMID:29967467   PMID:30130433   PMID:30185409   PMID:30285291   PMID:30297694   PMID:30321752   PMID:30530752   PMID:30897162  
PMID:31109364   PMID:31253725   PMID:31303423   PMID:31369572   PMID:31409672   PMID:31433857   PMID:31469835   PMID:31481482   PMID:31582556   PMID:31601784   PMID:31672904   PMID:31729420  
PMID:31813828   PMID:32130902   PMID:32294451   PMID:32444652   PMID:32450947   PMID:32527952   PMID:32533074   PMID:33035443   PMID:33141023   PMID:33178185   PMID:33219327   PMID:33328477  
PMID:33454424   PMID:33664229   PMID:34062116   PMID:34225769   PMID:34429328   PMID:34450641   PMID:34671097   PMID:34815802   PMID:34843900   PMID:34940950   PMID:35204735   PMID:35482420  
PMID:35649376   PMID:35709757   PMID:35906245   PMID:36206195   PMID:36350717   PMID:36596806   PMID:36818285   PMID:37279752   PMID:37471646   PMID:37566453   PMID:37708282   PMID:37813816  
PMID:37829205   PMID:37883230   PMID:37932452   PMID:38254689   PMID:38346162   PMID:38374152   PMID:38391908   PMID:38395995   PMID:38689088   PMID:39141517   PMID:39147774   PMID:39366382  


Genomics

Comparative Map Data
Gata1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,825,504 - 7,842,844 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,825,499 - 7,844,310 (-)EnsemblGRCm39 Ensembl
GRCm38X7,959,260 - 7,976,663 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,959,260 - 7,978,071 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X7,536,386 - 7,544,941 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X7,116,219 - 7,124,774 (-)NCBIMGSCv36mm8
CeleraX3,501,753 - 3,509,992 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.59NCBI
GATA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X48,786,590 - 48,794,311 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX48,786,540 - 48,794,311 (+)EnsemblGRCh38hg38GRCh38
GRCh37X48,644,998 - 48,652,718 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,529,906 - 48,537,662 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X48,401,209 - 48,408,964NCBI
CeleraX53,010,810 - 53,018,547 (-)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX46,304,230 - 46,311,086 (+)NCBIHuRef
CHM1_1X48,676,125 - 48,683,862 (+)NCBICHM1_1
T2T-CHM13v2.0X48,197,083 - 48,204,804 (+)NCBIT2T-CHM13v2.0
Gata1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,193,291 - 17,209,462 (+)NCBIGRCr8
mRatBN7.2X14,529,706 - 14,537,530 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,529,702 - 14,537,530 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX19,343,293 - 19,351,113 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,732,001 - 20,739,823 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,997,169 - 17,004,991 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,273,937 - 15,281,759 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,378,789 - 15,382,066 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,273,933 - 15,281,759 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,054,178 - 16,062,000 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,564,259 - 26,572,081 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X26,617,727 - 26,625,550 (+)NCBI
CeleraX14,614,331 - 14,622,295 (+)NCBICelera
Cytogenetic MapXq12NCBI
Gata1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543334,061 - 342,061 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955543334,581 - 342,042 (+)NCBIChiLan1.0ChiLan1.0
GATA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,280,196 - 50,283,660 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,283,568 - 50,287,032 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X41,088,724 - 41,092,190 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X48,945,394 - 48,953,126 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX48,945,394 - 48,953,126 (+)Ensemblpanpan1.1panPan2
GATA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X41,991,321 - 41,998,319 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX41,971,582 - 41,998,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,366,765 - 16,373,724 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,127,527 - 42,134,488 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,127,523 - 42,134,481 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,113,779 - 42,120,737 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,102,035 - 42,108,995 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,196,190 - 42,203,150 (+)NCBIUU_Cfam_GSD_1.0
Gata1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,488,565 - 34,510,496 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936721742,862 - 750,768 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936721742,862 - 750,843 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GATA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX42,898,442 - 42,905,976 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X42,898,431 - 42,905,939 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,745,326 - 47,752,876 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GATA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X45,912,638 - 45,920,415 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX45,917,231 - 45,920,268 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607611,392,674 - 11,400,428 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gata1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624893595,967 - 602,979 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624893595,948 - 602,980 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gata1
363 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:707
Count of miRNA genes:485
Interacting mature miRNAs:553
Transcripts:ENSMUST00000033502, ENSMUST00000125418, ENSMUST00000128449
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302195Pbwg10_mpostnatal body weight growth 10 (mouse)Not determinedX126202173Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse

Markers in Region
Gata1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,962,254 - 7,963,131UniSTSGRCm38
MGSCv37X7,539,380 - 7,540,257UniSTSGRCm37
CeleraX3,506,121 - 3,506,998UniSTS
Cytogenetic MapXA2UniSTS
cM MapX1.9UniSTS
cM MapX1.9UniSTS
cM MapX1.9UniSTS
cM MapX1.9UniSTS
cM MapX1.9UniSTS
cM MapX1.9UniSTS
UniSTS:237997  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,959,755 - 7,960,042UniSTSGRCm38
MGSCv37X7,536,881 - 7,537,168UniSTSGRCm37
CeleraX3,509,210 - 3,509,497UniSTS
Cytogenetic MapXA2UniSTS
cM MapX1.9UniSTS
PMC123124P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,960,973 - 7,961,213UniSTSGRCm38
MGSCv37X7,538,099 - 7,538,339UniSTSGRCm37
CeleraX3,508,039 - 3,508,279UniSTS
Cytogenetic MapXA2UniSTS
cM MapX1.9UniSTS
PMC133542P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,959,260 - 7,959,704UniSTSGRCm38
MGSCv37X7,536,386 - 7,536,830UniSTSGRCm37
CeleraX3,509,548 - 3,509,992UniSTS
Cytogenetic MapXA2UniSTS
cM MapX1.9UniSTS
GDB:574073  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,959,988 - 7,960,708UniSTSGRCm38
MGSCv37X7,537,114 - 7,537,834UniSTSGRCm37
CeleraX3,508,544 - 3,509,264UniSTS
Cytogenetic MapXA2UniSTS
cM MapX1.9UniSTS
Gata1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA2UniSTS
Gata1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA2UniSTS
Gata1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA2UniSTS
Gata1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,962,360 - 7,963,050UniSTSGRCm38
MGSCv37X7,539,486 - 7,540,176UniSTSGRCm37
CeleraX3,506,202 - 3,506,892UniSTS
Cytogenetic MapXA2UniSTS
cM MapX1.9UniSTS
Gata1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,962,281 - 7,963,051UniSTSGRCm38
MGSCv37X7,539,407 - 7,540,177UniSTSGRCm37
CeleraX3,506,201 - 3,506,971UniSTS
Cytogenetic MapXA2UniSTS
cM MapX1.9UniSTS
Gata1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,959,417 - 7,959,998UniSTSGRCm38
MGSCv37X7,536,543 - 7,537,124UniSTSGRCm37
CeleraX3,509,254 - 3,509,835UniSTS
Cytogenetic MapXA2UniSTS
cM MapX1.9UniSTS
Gata1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA2UniSTS
cM MapX1.9UniSTS
Gata1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA2UniSTS
cM MapX1.9UniSTS
Gata1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA2UniSTS
Gata1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA2UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000033502   ⟹   ENSMUSP00000033502
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,825,499 - 7,834,149 (-)Ensembl
GRCm38.p6 EnsemblX7,959,260 - 7,967,910 (-)Ensembl
Ensembl Acc Id: ENSMUST00000125418   ⟹   ENSMUSP00000118052
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,828,679 - 7,844,310 (-)Ensembl
GRCm38.p6 EnsemblX7,962,440 - 7,978,071 (-)Ensembl
Ensembl Acc Id: ENSMUST00000128449   ⟹   ENSMUSP00000123620
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,829,268 - 7,830,405 (-)Ensembl
GRCm38.p6 EnsemblX7,963,029 - 7,964,166 (-)Ensembl
RefSeq Acc Id: NM_001410603   ⟹   NP_001397532
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,825,504 - 7,830,423 (-)NCBI
RefSeq Acc Id: NM_001410604   ⟹   NP_001397533
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,825,504 - 7,842,844 (-)NCBI
RefSeq Acc Id: NM_008089   ⟹   NP_032115
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,825,504 - 7,834,082 (-)NCBI
GRCm38X7,959,260 - 7,967,910 (-)NCBI
MGSCv37X7,536,386 - 7,544,941 (-)RGD
CeleraX3,501,658 - 3,509,992 (+)NCBI
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032115   ⟸   NM_008089
- UniProtKB: Q3UIH9 (UniProtKB/Swiss-Prot),   Q7TMX8 (UniProtKB/Swiss-Prot),   P17679 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000118052   ⟸   ENSMUST00000125418
Ensembl Acc Id: ENSMUSP00000033502   ⟸   ENSMUST00000033502
Ensembl Acc Id: ENSMUSP00000123620   ⟸   ENSMUST00000128449
RefSeq Acc Id: NP_001397533   ⟸   NM_001410604
- UniProtKB: Q3UIH9 (UniProtKB/Swiss-Prot),   P17679 (UniProtKB/Swiss-Prot),   Q7TMX8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001397532   ⟸   NM_001410603
- UniProtKB: Q3UIH9 (UniProtKB/Swiss-Prot),   P17679 (UniProtKB/Swiss-Prot),   Q7TMX8 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P17679-F1-model_v2 AlphaFold P17679 1-413 view protein structure

Promoters
RGD ID:13680018
Promoter ID:EPDNEW_M24158
Type:initiation region
Name:Gata1_1
Description:Mus musculus GATA binding protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24159  EPDNEW_M24160  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X7,967,843 - 7,967,903EPDNEW
RGD ID:13680020
Promoter ID:EPDNEW_M24159
Type:single initiation site
Name:Gata1_2
Description:Mus musculus GATA binding protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24158  EPDNEW_M24160  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X7,973,787 - 7,973,847EPDNEW
RGD ID:13680022
Promoter ID:EPDNEW_M24160
Type:initiation region
Name:Gata1_3
Description:Mus musculus GATA binding protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24158  EPDNEW_M24159  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X7,976,557 - 7,976,617EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95661 AgrOrtholog
Ensembl Genes ENSMUSG00000031162 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033502 ENTREZGENE
  ENSMUST00000033502.14 UniProtKB/Swiss-Prot
  ENSMUST00000125418.2 UniProtKB/TrEMBL
  ENSMUST00000128449.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.50.10 UniProtKB/Swiss-Prot
InterPro Transcription_factor_GATA UniProtKB/Swiss-Prot
  Znf_GATA UniProtKB/Swiss-Prot
  Znf_NHR/GATA UniProtKB/Swiss-Prot
KEGG Report mmu:14460 UniProtKB/Swiss-Prot
MGD MGI:95661 ENTREZGENE
NCBI Gene 14460 ENTREZGENE
PANTHER PTHR10071 UniProtKB/Swiss-Prot
  PTHR10071:SF190 UniProtKB/Swiss-Prot
Pfam GATA UniProtKB/Swiss-Prot
PhenoGen Gata1 PhenoGen
PRINTS GATAZNFINGER UniProtKB/Swiss-Prot
PROSITE GATA_ZN_FINGER_1 UniProtKB/Swiss-Prot
  GATA_ZN_FINGER_2 UniProtKB/Swiss-Prot
SMART ZnF_GATA UniProtKB/Swiss-Prot
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot
UniProt B1AUB3_MOUSE UniProtKB/TrEMBL
  B1AUB4_MOUSE UniProtKB/TrEMBL
  GATA1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UIH9 ENTREZGENE
  Q7TMX8 ENTREZGENE
UniProt Secondary Q3UIH9 UniProtKB/Swiss-Prot
  Q7TMX8 UniProtKB/Swiss-Prot