RNU6-767P (RNA, U6 small nuclear 767, pseudogene) - Rat Genome Database

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Gene: RNU6-767P (RNA, U6 small nuclear 767, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-767P
Name: RNA, U6 small nuclear 767, pseudogene
RGD ID: 10413596
HGNC Page HGNC:47730
Description: INTERACTS WITH benzethonium chloride; dimethyl-(phenylmethyl)-[2-[2-[4-(2,4,4-trimethylpentan-2-yl)phenoxy]ethoxy]ethyl]ammonium
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381717,170,083 - 17,170,189 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1717,170,083 - 17,170,189 (+)EnsemblGRCh38hg38GRCh38
GRCh371717,073,397 - 17,073,503 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17p11.2NCBI
CHM1_11717,083,024 - 17,083,130 (+)NCBICHM1_1
T2T-CHM13v2.01717,116,136 - 17,116,242 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
RNU6-767P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381717,170,083 - 17,170,189 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1717,170,083 - 17,170,189 (+)EnsemblGRCh38hg38GRCh38
GRCh371717,073,397 - 17,073,503 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17p11.2NCBI
CHM1_11717,083,024 - 17,083,130 (+)NCBICHM1_1
T2T-CHM13v2.01717,116,136 - 17,116,242 (+)NCBIT2T-CHM13v2.0
Rnu6-767
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82104,157,617 - 104,157,720 (+)NCBIGRCr8
mRatBN7.22102,241,494 - 102,241,597 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2102,241,494 - 102,241,597 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2104,558,890 - 104,558,993 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q24NCBI
LOC119864838
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2017,590,359 - 17,590,464 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02017,657,463 - 17,657,568 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2017,657,463 - 17,657,568 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12017,349,276 - 17,349,381 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02017,694,196 - 17,694,301 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02017,753,651 - 17,753,756 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:124
Interacting mature miRNAs:126
Transcripts:ENST00000384132
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298406BP16_HBlood pressure QTL 16 (human)0.0004Blood pressurehypertension susceptibility171477864740778647Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
424 678 1276 930 1313 602 1022 4 191 492 128 753 2497 2206 49 1109 345 739 793 74

Sequence


Ensembl Acc Id: ENST00000384132
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1717,170,083 - 17,170,189 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-767P COSMIC
Ensembl Genes ENSG00000206859 Ensembl, ENTREZGENE
GTEx ENSG00000206859 GTEx
HGNC ID HGNC:47730 ENTREZGENE
Human Proteome Map RNU6-767P Human Proteome Map
NCBI Gene RNU6-767P ENTREZGENE