RNU6-1024P (RNA, U6 small nuclear 1024, pseudogene) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: RNU6-1024P (RNA, U6 small nuclear 1024, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-1024P
Name: RNA, U6 small nuclear 1024, pseudogene
RGD ID: 10399941
HGNC Page HGNC:47987
Description: INTERACTS WITH glyphosate
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Rat
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38315,433,111 - 15,433,216 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl315,433,110 - 15,433,216 (-)EnsemblGRCh38hg38GRCh38
GRCh37315,474,618 - 15,474,723 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3p25.1NCBI
CHM1_1315,425,499 - 15,425,604 (-)NCBICHM1_1
T2T-CHM13v2.0315,435,522 - 15,435,627 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
glyphosate  (EXP)

References

Genomics

Comparative Map Data
RNU6-1024P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38315,433,111 - 15,433,216 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl315,433,110 - 15,433,216 (-)EnsemblGRCh38hg38GRCh38
GRCh37315,474,618 - 15,474,723 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3p25.1NCBI
CHM1_1315,425,499 - 15,425,604 (-)NCBICHM1_1
T2T-CHM13v2.0315,435,522 - 15,435,627 (-)NCBIT2T-CHM13v2.0
Rnu6-630
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81252,992,903 - 252,993,009 (+)NCBIGRCr8
mRatBN7.21243,043,698 - 243,043,804 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1243,043,698 - 243,043,804 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1263,932,986 - 263,933,091 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1q54NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:109
Interacting mature miRNAs:111
Transcripts:ENST00000384199
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
449 715 847 582 1474 628 970 2 235 606 184 1023 2010 1879 19 915 299 643 716 58

Sequence


Ensembl Acc Id: ENST00000384199
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl315,433,110 - 15,433,216 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1024P COSMIC
Ensembl Genes ENSG00000206926 Ensembl, ENTREZGENE
GTEx ENSG00000206926 GTEx
HGNC ID HGNC:47987 ENTREZGENE
Human Proteome Map RNU6-1024P Human Proteome Map
NCBI Gene RNU6-1024P ENTREZGENE