Cebpa (CCAAT/enhancer binding protein alpha) - Rat Genome Database

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Gene: Cebpa (CCAAT/enhancer binding protein alpha) Mus musculus
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Symbol: Cebpa
Name: CCAAT/enhancer binding protein alpha
RGD ID: 10325
MGI Page MGI
Description: Enables several functions, including DNA binding activity; DNA-binding transcription activator activity, RNA polymerase II-specific; and identical protein binding activity. Involved in several processes, including fat cell differentiation; positive regulation of macrophage activation; and regulation of gene expression. Acts upstream of or within several processes, including brown fat cell differentiation; positive regulation of cell differentiation; and regulation of DNA-templated transcription. Located in nucleus. Part of transcription regulator complex. Is expressed in several structures, including adipose tissue; early conceptus; genitourinary system; integumental system; and lung. Used to study acute myeloid leukemia. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human CEBPA (CCAAT enhancer binding protein alpha).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: C/ebp; C/EBP alpha; C/ebpalpha; CBF-A; CCAAT/enhancer binding protein (C/EBP), alpha; CCAAT/enhancer-binding protein alpha; Ceb; Cebp
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39734,818,718 - 34,821,353 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl734,818,718 - 34,821,353 (+)EnsemblGRCm39 Ensembl
GRCm38735,119,293 - 35,121,928 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,119,293 - 35,121,928 (+)EnsemblGRCm38mm10GRCm38
MGSCv37735,904,312 - 35,906,947 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36734,828,063 - 34,830,688 (+)NCBIMGSCv36mm8
Celera730,255,122 - 30,257,756 (+)NCBICelera
Cytogenetic Map7B2NCBI
cM Map721.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-artemisinic acid  (ISO)
(+)-pilocarpine  (ISO)
(-)-cotinine  (ISO)
(-)-epigallocatechin 3-gallate  (EXP)
(1->4)-beta-D-glucan  (EXP)
(S)-nicotine  (EXP,ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,2-dimethylhydrazine  (EXP)
1-nitropyrene  (ISO)
15-deoxy-Delta(12,14)-prostaglandin J2  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-acetamidofluorene  (ISO)
2-amino-2-deoxy-D-galactopyranose  (EXP)
2-amino-2-deoxy-D-glucopyranose 6-phosphate  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,3',5-triiodo-L-thyronine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3,5,6-trichloro-2-pyridinol  (EXP)
3,5,6-trichloropyridine-2-one  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP,ISO)
3-methyladenine  (ISO)
3-methylcholanthrene  (EXP)
3-phenylprop-2-enal  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (EXP)
4-tert-Octylphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
9,10-epoxy-12-octadecenoic acid  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
AICA ribonucleotide  (EXP)
alcohol  (ISO)
aldehydo-D-glucosamine 6-phosphate  (EXP)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-Zearalanol  (ISO)
ammonium chloride  (ISO)
andrographolide  (EXP)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
antimonite  (ISO)
antimycin A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP,ISO)
arsenous acid  (EXP,ISO)
avobenzone  (ISO)
baicalein  (EXP)
benzamides  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzofurans  (EXP)
Benzyl parahydroxybenzoate  (EXP)
berberine  (EXP,ISO)
beta-carotene  (EXP)
beta-D-glucosamine 6-sulfate  (EXP)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bismuth atom  (ISO)
bismuthane  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
boric acid  (EXP)
bortezomib  (ISO)
Butylbenzyl phthalate  (EXP)
Butylparaben  (EXP,ISO)
C60 fullerene  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calcitriol  (EXP)
calcium dichloride  (ISO)
cannabidiolic acid  (EXP)
capsaicin  (EXP,ISO)
carbaryl  (ISO)
carbon nanotube  (EXP)
celastrol  (EXP)
celecoxib  (ISO)
cerulenin  (EXP)
ceruletide  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
cholesterol  (ISO)
choline  (EXP,ISO)
chrysin  (EXP)
cisplatin  (ISO)
clofazimine  (ISO)
Clofop  (ISO)
clozapine  (EXP)
cobalt dichloride  (EXP)
colforsin daropate hydrochloride  (EXP,ISO)
copper(II) sulfate  (ISO)
cordycepin  (ISO)
corticosterone  (ISO)
cortisol  (ISO)
cucurbitacin B  (EXP)
cucurbitacin I  (EXP)
curcumin  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
DDE  (ISO)
DDT  (EXP)
decabromodiphenyl ether  (ISO)
deguelin  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (EXP,ISO)
diallyl trisulfide  (EXP)
diarsenic trioxide  (EXP,ISO)
diazinon  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dibutylstannane  (ISO)
diethyl phthalate  (EXP)
diethylstilbestrol  (EXP,ISO)
diisobutyl phthalate  (EXP)
diisononyl phthalate  (EXP)
dioxygen  (EXP)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
diquat  (EXP)
doxorubicin  (ISO)
duvoglustat  (EXP)
efavirenz  (ISO)
elemental selenium  (EXP)
endosulfan  (ISO)
endrin  (EXP)
enzalutamide  (ISO)
epoxiconazole  (EXP)
epoxomicin  (ISO)
ethanol  (EXP,ISO)
ethylparaben  (EXP)
etoposide  (ISO)
fenthion  (EXP)
fipronil  (EXP)
flavonoids  (ISO)
folic acid  (EXP)
fulvestrant  (EXP,ISO)
genistein  (EXP,ISO)
gentamycin  (ISO)
Geraniin  (EXP)
Gingerenone A  (EXP)
gingerol  (EXP)
glucose  (ISO)
glycerol 2-phosphate  (EXP,ISO)
glycyrrhizinic acid  (EXP)
GW 501516  (ISO)
hemin  (EXP)
herbimycin  (ISO)
hesperetin  (ISO)
hexadecanoic acid  (EXP,ISO)
hispidulin  (EXP)
hydrazines  (EXP)
hydrogen peroxide  (ISO)
hydroxytyrosol  (EXP)
indirubin  (EXP)
indometacin  (EXP,ISO)
insulin  (ISO)
isoliquiritigenin  (EXP)
isoniazide  (EXP)
ivermectin  (EXP)
ketoconazole  (ISO)
L-ascorbic acid  (EXP,ISO)
L-methionine  (EXP,ISO)
lead diacetate  (EXP,ISO)
lead(0)  (EXP)
lipopolysaccharide  (EXP,ISO)
lithium chloride  (ISO)
loliolide  (EXP)
LY294002  (ISO)
menadione  (ISO)
mercury dichloride  (EXP)
metformin  (ISO)
methimazole  (ISO)
methoxychlor  (ISO)
methylparaben  (EXP)
mifepristone  (EXP,ISO)
MK-2206  (ISO)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (EXP)
N-acetyl-L-cysteine  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
nevirapine  (ISO)
nicotine  (EXP,ISO)
nicotinic acid  (ISO)
nimesulide  (EXP,ISO)
norwogonin  (EXP)
ochratoxin A  (ISO)
orlistat  (ISO)
osthole  (EXP)
p-tert-Amylphenol  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorobutanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (EXP)
Phenylamil  (EXP)
phenylephrine  (ISO)
phorbol 13-acetate 12-myristate  (EXP)
phoxim  (EXP)
pioglitazone  (EXP)
pirinixic acid  (EXP,ISO)
platycodin D  (EXP,ISO)
pomalidomide  (ISO)
prednisone  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (EXP)
propylparaben  (EXP)
prostaglandin E2  (EXP)
quercetin  (EXP,ISO)
raloxifene  (EXP,ISO)
reactive oxygen species  (ISO)
resveratrol  (EXP)
rifampicin  (EXP)
rimonabant  (EXP)
risperidone  (EXP)
ritonavir  (EXP)
rosmarinic acid  (ISO)
rotenone  (ISO)
rottlerin  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 203580  (ISO)
selenium atom  (EXP)
sildenafil citrate  (EXP)
silibinin  (EXP)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sincalide  (ISO)
sirolimus  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
sodium dichromate  (EXP)
stavudine  (EXP)
sunitinib  (ISO)
tacrolimus hydrate  (EXP)
tamoxifen  (EXP)
Tanshinone I  (EXP)
taurine  (ISO)
terbufos  (EXP)
tert-butyl hydroperoxide  (ISO)
Tesaglitazar  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
Theaflavin 3,3'-digallate  (ISO)
thioacetamide  (ISO)
titanium dioxide  (ISO)
tolclofos-methyl  (EXP)
tolylfluanid  (EXP)
topiramate  (ISO)
tributylstannane  (EXP,ISO)
trichloroethene  (ISO)
triclosan  (EXP)
triphenyl phosphate  (EXP,ISO)
triptonide  (EXP)
troglitazone  (EXP,ISO)
trovafloxacin  (EXP)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)
valsartan  (ISO)
vinclozolin  (ISO)
vitamin D  (ISO)
vitamin E  (EXP)
wogonin  (EXP)
zearalenone  (ISO)
zidovudine  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
acute-phase response  (ISO)
animal organ regeneration  (ISO)
brown fat cell differentiation  (IDA)
cell differentiation  (ISO)
cell population proliferation  (IMP)
cellular response to lithium ion  (IDA)
cellular response to organic cyclic compound  (IDA)
cellular response to tumor necrosis factor  (IDA)
cellular response to xenobiotic stimulus  (ISO)
cholesterol metabolic process  (IMP)
cytokine-mediated signaling pathway  (NAS)
DNA-templated transcription  (IEA)
embryonic placenta development  (IGI)
energy homeostasis  (IDA)
epithelial cell maturation  (IMP)
fat cell differentiation  (IDA,IMP,ISO)
glucose homeostasis  (IMP)
granulocyte differentiation  (IDA,IMP)
hematopoietic stem cell proliferation  (IMP)
inner ear development  (IDA)
interleukin-6-mediated signaling pathway  (ISO)
lipid homeostasis  (IMP)
liver development  (IMP,ISO)
lung development  (IMP)
macrophage differentiation  (IMP)
memory  (ISO)
mitochondrion organization  (IMP)
myeloid cell differentiation  (IBA,IDA)
negative regulation of cell cycle  (IDA)
negative regulation of cell population proliferation  (IDA,ISO)
negative regulation of DNA-templated transcription  (IDA,ISO)
negative regulation of hematopoietic stem cell proliferation  (IMP)
negative regulation of transcription by RNA polymerase II  (IDA,ISO)
Notch signaling pathway  (IDA)
osteoblast development  (ISO)
positive regulation of DNA-templated transcription  (IDA)
positive regulation of DNA-templated transcription initiation  (ISO)
positive regulation of fat cell differentiation  (IDA,ISO)
positive regulation of gene expression  (IMP)
positive regulation of inflammatory response  (IMP)
positive regulation of macrophage activation  (IMP)
positive regulation of osteoblast differentiation  (IDA)
positive regulation of transcription by RNA polymerase II  (IDA,ISO)
regulation of cell population proliferation  (IMP)
regulation of DNA-templated transcription  (IDA,ISO,NAS)
regulation of transcription by RNA polymerase II  (IBA,IDA)
response to dexamethasone  (ISO)
response to nutrient  (ISO)
response to phenylpropanoid  (ISO)
response to vitamin B2  (ISO)
transcription by RNA polymerase I  (ISO)
urea cycle  (IDA)
white fat cell differentiation  (IMP)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal bile canaliculus morphology  (IAGP)
abnormal bone marrow cell morphology/development  (IAGP)
abnormal brown adipose tissue morphology  (IAGP)
abnormal circulating insulin level  (IAGP)
abnormal common myeloid progenitor cell morphology  (IAGP)
abnormal definitive hematopoiesis  (IAGP)
abnormal energy expenditure  (IAGP)
abnormal epidermal layer morphology  (IAGP)
abnormal epidermis stratum basale morphology  (IAGP)
abnormal epidermis stratum corneum morphology  (IAGP)
abnormal epidermis stratum granulosum morphology  (IAGP)
abnormal epidermis stratum spinosum morphology  (IAGP)
abnormal epidermis suprabasal layer morphology  (IAGP)
abnormal eye morphology  (IAGP)
abnormal fat cell morphology  (IAGP)
abnormal gluconeogenesis  (IAGP)
abnormal glucose homeostasis  (IAGP)
abnormal glycogen homeostasis  (IAGP)
abnormal gonadal fat pad morphology  (IAGP)
abnormal granulocyte morphology  (IAGP)
abnormal hair follicle infundibulum morphology  (IAGP)
abnormal hematopoietic system physiology  (IAGP)
abnormal hepatocyte morphology  (IAGP)
abnormal inguinal fat pad morphology  (IAGP)
abnormal keratinocyte differentiation  (IAGP)
abnormal leukocyte morphology  (IAGP)
abnormal lipid homeostasis  (IAGP)
abnormal liver morphology  (IAGP)
abnormal liver physiology  (IAGP)
abnormal lung development  (IAGP)
abnormal lung interstitium morphology  (IAGP)
abnormal lung morphology  (IAGP)
abnormal lung saccule morphology  (IAGP)
abnormal lung vasculature morphology  (IAGP)
abnormal male preputial gland morphology  (IAGP)
abnormal Meibomian gland morphology  (IAGP)
abnormal myeloid leukocyte morphology  (IAGP)
abnormal myelopoiesis  (IAGP)
abnormal pulmonary alveolus epithelial cell morphology  (IAGP)
abnormal pulmonary alveolus morphology  (IAGP)
abnormal pulmonary alveolus wall morphology  (IAGP)
abnormal sebaceous gland morphology  (IAGP)
abnormal sebaceous lipid secretion  (IAGP)
abnormal sebocyte differentiation  (IAGP)
abnormal sebocyte morphology  (IAGP)
abnormal surfactant secretion  (IAGP)
abnormal type I pneumocyte morphology  (IAGP)
abnormal type II pneumocyte morphology  (IAGP)
abnormal white adipose tissue morphology  (IAGP)
absent alveolar lamellar bodies  (IAGP)
absent common myeloid progenitor cells  (IAGP)
absent epidermis stratum corneum  (IAGP)
absent epidermis stratum granulosum  (IAGP)
absent gastric milk in neonates  (IAGP)
absent type I pneumocytes  (IAGP)
absent type II pneumocytes  (IAGP)
atelectasis  (IAGP)
decreased adipocyte glucose uptake  (IAGP)
decreased birth weight  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased brown adipose tissue amount  (IAGP)
decreased circulating cholesterol level  (IAGP)
decreased circulating glucose level  (IAGP)
decreased circulating HDL cholesterol level  (IAGP)
decreased circulating insulin level  (IAGP)
decreased circulating LDL cholesterol level  (IAGP)
decreased circulating leptin level  (IAGP)
decreased circulating serum albumin level  (IAGP)
decreased granulocyte number  (IAGP)
decreased hematocrit  (IAGP)
decreased hepatocyte number  (IAGP)
decreased hepatocyte proliferation  (IAGP)
decreased liver cholesterol level  (IAGP)
decreased liver glycogen level  (IAGP)
decreased liver triglyceride level  (IAGP)
decreased monocyte cell number  (IAGP)
decreased neutrophil cell number  (IAGP)
decreased skeletal muscle cell glucose uptake  (IAGP)
decreased susceptibility to diet-induced hepatic steatosis  (IAGP)
decreased susceptibility to diet-induced obesity  (IAGP)
decreased white adipose tissue amount  (IAGP)
dry eyes  (IAGP)
enlarged spleen  (IAGP)
epidermal hyperplasia  (IAGP)
extramedullary hematopoiesis  (IAGP)
eyelids open at birth  (IAGP)
failure of myelopoiesis  (IAGP)
flaky skin  (IAGP)
hair follicle outer root sheath hyperplasia  (IAGP)
hepatic steatosis  (IAGP)
hyperkeratosis  (IAGP)
hypoglycemia  (IAGP)
impaired glucose tolerance  (IAGP)
impaired lung alveolus development  (IAGP)
increased brown adipose tissue amount  (IAGP)
increased circulating alanine transaminase level  (IAGP)
increased circulating aspartate transaminase level  (IAGP)
increased circulating cholesterol level  (IAGP)
increased circulating free fatty acids level  (IAGP)
increased circulating glucose level  (IAGP)
increased circulating HDL cholesterol level  (IAGP)
increased circulating LDL cholesterol level  (IAGP)
increased circulating triglyceride level  (IAGP)
increased circulating tyrosine level  (IAGP)
increased circulating VLDL cholesterol level  (IAGP)
increased erythroid progenitor cell number  (IAGP)
increased food intake  (IAGP)
increased hematopoietic stem cell number  (IAGP)
increased incidence of tumors by chemical induction  (IAGP)
increased keratinocyte proliferation  (IAGP)
increased leukemia incidence  (IAGP)
increased litter size  (IAGP)
increased liver glycogen level  (IAGP)
increased liver triglyceride level  (IAGP)
increased pulmonary alveolus wall thickness  (IAGP)
increased skin papilloma incidence  (IAGP)
increased skin tumor incidence  (IAGP)
increased squamous cell carcinoma incidence  (IAGP)
increased tumor growth/size  (IAGP)
increased type II pneumocyte number  (IAGP)
insulin resistance  (IAGP)
lethargy  (IAGP)
liver failure  (IAGP)
liver inflammation  (IAGP)
Meibomian gland atrophy  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
parakeratosis  (IAGP)
perinatal lethality  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
pulmonary vascular congestion  (IAGP)
respiratory distress  (IAGP)
respiratory failure  (IAGP)
sepsis  (IAGP)
shiny skin  (IAGP)
slow postnatal weight gain  (IAGP)
thick epidermis  (IAGP)
tight skin  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Incipient Alzheimer's disease: microarray correlation analyses reveal major transcriptional and tumor suppressor responses. Blalock EM, etal., Proc Natl Acad Sci U S A. 2004 Feb 17;101(7):2173-8. Epub 2004 Feb 9.
2. C/EBPalpha regulates osteoclast lineage commitment. Chen W, etal., Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):7294-9. doi: 10.1073/pnas.1211383110. Epub 2013 Apr 11.
3. The dysfunction of hepatic transcriptional factors in mice with Huntington's Disease. Chiang MC, etal., Biochim Biophys Acta. 2011 Sep;1812(9):1111-20. Epub 2011 May 30.
4. Dysregulation of C/EBPalpha by mutant Huntingtin causes the urea cycle deficiency in Huntington's disease. Chiang MC, etal., Hum Mol Genet. 2007 Mar 1;16(5):483-98. Epub 2007 Jan 9.
5. C/EBP alpha and C/EBP beta regulate haptoglobin gene expression during rat liver development and the acute-phase response. Dinic S, etal., Mol Biol Rep. 2005 Sep;32(3):141-7.
6. Regulation of microglial proliferation during chronic neurodegeneration. Gomez-Nicola D, etal., J Neurosci. 2013 Feb 6;33(6):2481-93. doi: 10.1523/JNEUROSCI.4440-12.2013.
7. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
8. MGDs mouse GO annotations MGD data from the GO Consortium
9. MGD IEA MGD IEA
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
13. The CCAAT/enhancer binding protein (C/EBP) delta is differently regulated by fibrillar and oligomeric forms of the Alzheimer amyloid-beta peptide. Ramberg V, etal., J Neuroinflammation. 2011 Apr 14;8:34. doi: 10.1186/1742-2094-8-34.
14. Mouse MP Annotation Import Pipeline RGD automated import pipeline
15. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
17. Age-dependent response of CCAAT/enhancer binding proteins following traumatic brain injury in mice. Sandhir R and Berman NE, Neurochem Int. 2010 Jan;56(1):188-93. doi: 10.1016/j.neuint.2009.10.002. Epub 2009 Oct 13.
18. Lamin A/C deficiency is associated with fat infiltration of muscle and bone. Tong J, etal., Mech Ageing Dev. 2011 Nov-Dec;132(11-12):552-9. doi: 10.1016/j.mad.2011.09.004. Epub 2011 Oct 1.
19. CCAAT-enhancer binding protein alpha is expressed in activated microglial cells after brain injury. Walton M, etal., Brain Res Mol Brain Res. 1998 Oct 30;61(1-2):11-22.
Additional References at PubMed
PMID:1371993   PMID:1618860   PMID:1840554   PMID:1935900   PMID:1981054   PMID:2006196   PMID:2401206   PMID:2570675   PMID:2697636   PMID:2726767   PMID:2792758   PMID:7531665  
PMID:7568232   PMID:7575576   PMID:7652557   PMID:7690558   PMID:7862113   PMID:7958846   PMID:7959007   PMID:8041785   PMID:8297376   PMID:8440378   PMID:8452817   PMID:8530045  
PMID:8563027   PMID:8570651   PMID:8628296   PMID:8657121   PMID:8798745   PMID:8889548   PMID:8946919   PMID:9001238   PMID:9012825   PMID:9102400   PMID:9126737   PMID:9315660  
PMID:9334201   PMID:9372966   PMID:9401069   PMID:9403069   PMID:9405372   PMID:9421462   PMID:9428809   PMID:9494081   PMID:9545285   PMID:9611252   PMID:9614188   PMID:9637692  
PMID:9705820   PMID:9743535   PMID:9765281   PMID:9819413   PMID:9918941   PMID:10025511   PMID:10075730   PMID:10078198   PMID:10082561   PMID:10233885   PMID:10319019   PMID:10319323  
PMID:10349636   PMID:10510303   PMID:10588870   PMID:10859308   PMID:10921906   PMID:10937998   PMID:10982846   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11606718   PMID:11672531  
PMID:11683182   PMID:11726507   PMID:11782441   PMID:11867521   PMID:11877276   PMID:11929766   PMID:11940593   PMID:12037571   PMID:12055200   PMID:12072435   PMID:12105198   PMID:12145325  
PMID:12149265   PMID:12161423   PMID:12270934   PMID:12446786   PMID:12466851   PMID:12477932   PMID:12502791   PMID:12531886   PMID:12558604   PMID:12588883   PMID:12593840   PMID:12654290  
PMID:12668682   PMID:12702500   PMID:12821655   PMID:12861022   PMID:12949251   PMID:14522948   PMID:14656889   PMID:14660596   PMID:14688407   PMID:14701740   PMID:14960573   PMID:15005571  
PMID:15073037   PMID:15107404   PMID:15130516   PMID:15131800   PMID:15143161   PMID:15158467   PMID:15175325   PMID:15178647   PMID:15226823   PMID:15277525   PMID:15289464   PMID:15292250  
PMID:15319454   PMID:15489334   PMID:15509779   PMID:15519652   PMID:15572670   PMID:15589173   PMID:15589691   PMID:15618518   PMID:15632071   PMID:15661397   PMID:15664994   PMID:15673614  
PMID:15684384   PMID:15914564   PMID:15944395   PMID:15983063   PMID:16085053   PMID:16085472   PMID:16141072   PMID:16141073   PMID:16150866   PMID:16166081   PMID:16166091   PMID:16288022  
PMID:16291948   PMID:16330751   PMID:16376852   PMID:16407117   PMID:16428455   PMID:16428462   PMID:16431920   PMID:16445384   PMID:16467360   PMID:16469877   PMID:16537903   PMID:16582099  
PMID:16595692   PMID:16600022   PMID:16606850   PMID:16675498   PMID:16698852   PMID:16751774   PMID:16754198   PMID:16892179   PMID:16909111   PMID:16912278   PMID:17021047   PMID:17079688  
PMID:17090532   PMID:17097562   PMID:17098861   PMID:17107955   PMID:17239350   PMID:17253645   PMID:17254333   PMID:17290224   PMID:17431401   PMID:17504763   PMID:17526489   PMID:17627282  
PMID:17638888   PMID:17704518   PMID:17934762   PMID:18004726   PMID:18026136   PMID:18038450   PMID:18079413   PMID:18160458   PMID:18195020   PMID:18212247   PMID:18239623   PMID:18263877  
PMID:18287559   PMID:18313667   PMID:18324732   PMID:18328085   PMID:18356246   PMID:18358466   PMID:18391014   PMID:18393386   PMID:18394553   PMID:18408001   PMID:18414493   PMID:18418387  
PMID:18445590   PMID:18448564   PMID:18478268   PMID:18481268   PMID:18492766   PMID:18514076   PMID:18596980   PMID:18622014   PMID:18622015   PMID:18632661   PMID:18675789   PMID:18703634  
PMID:18787208   PMID:18824566   PMID:18930917   PMID:18974039   PMID:18981473   PMID:19029947   PMID:19047629   PMID:19115128   PMID:19120697   PMID:19126543   PMID:19141617   PMID:19160422  
PMID:19272383   PMID:19399410   PMID:19403103   PMID:19465518   PMID:19500387   PMID:19553330   PMID:19564408   PMID:19581927   PMID:19587381   PMID:19641492   PMID:19749746   PMID:19805226  
PMID:19811452   PMID:19878871   PMID:19885945   PMID:19922759   PMID:20059953   PMID:20075868   PMID:20176812   PMID:20194724   PMID:20211142   PMID:20304921   PMID:20348279   PMID:20352127  
PMID:20371743   PMID:20378774   PMID:20410507   PMID:20412781   PMID:20422469   PMID:20516642   PMID:20534483   PMID:20647008   PMID:20660060   PMID:20685850   PMID:20698834   PMID:20713013  
PMID:20807890   PMID:20842632   PMID:21131957   PMID:21148742   PMID:21177758   PMID:21224212   PMID:21267068   PMID:21346255   PMID:21346772   PMID:21410980   PMID:21454593   PMID:21471000  
PMID:21486951   PMID:21558372   PMID:21571903   PMID:21664907   PMID:21669876   PMID:21704616   PMID:21725048   PMID:21795542   PMID:21829440   PMID:21832167   PMID:21873635   PMID:21969581  
PMID:21972064   PMID:22068055   PMID:22086955   PMID:22096492   PMID:22260862   PMID:22318449   PMID:22323595   PMID:22324440   PMID:22353998   PMID:22411169   PMID:22451420   PMID:22475484  
PMID:22652201   PMID:22675511   PMID:22715416   PMID:22780989   PMID:22851180   PMID:22869521   PMID:22916088   PMID:22933117   PMID:22940098   PMID:22988430   PMID:23071089   PMID:23151848  
PMID:23152541   PMID:23160200   PMID:23160954   PMID:23203925   PMID:23234329   PMID:23239344   PMID:23293024   PMID:23326314   PMID:23332504   PMID:23419397   PMID:23437297   PMID:23456364  
PMID:23472758   PMID:23499441   PMID:23502316   PMID:23505471   PMID:23541989   PMID:23547051   PMID:23610556   PMID:23620511   PMID:23637738   PMID:23762344   PMID:23831605   PMID:23864446  
PMID:23871207   PMID:23884858   PMID:23907538   PMID:23974200   PMID:23981481   PMID:23987512   PMID:23990620   PMID:23999723   PMID:24091675   PMID:24142791   PMID:24146773   PMID:24183681  
PMID:24185616   PMID:24202177   PMID:24204843   PMID:24216764   PMID:24273171   PMID:24367003   PMID:24379442   PMID:24404186   PMID:24415956   PMID:24449835   PMID:24516045   PMID:24582795  
PMID:24691027   PMID:24732798   PMID:24847504   PMID:24943845   PMID:24952961   PMID:24958854   PMID:25063451   PMID:25203139   PMID:25236377   PMID:25249504   PMID:25398328   PMID:25438063  
PMID:25446530   PMID:25447519   PMID:25451687   PMID:25483090   PMID:25641499   PMID:25749148   PMID:25778535   PMID:25779641   PMID:25855601   PMID:25921091   PMID:25923408   PMID:26118414  
PMID:26147683   PMID:26153766   PMID:26166747   PMID:26167872   PMID:26220403   PMID:26243869   PMID:26280538   PMID:26295369   PMID:26324181   PMID:26348894   PMID:26382271   PMID:26416771  
PMID:26417690   PMID:26476147   PMID:26527688   PMID:26627738   PMID:26659641   PMID:26740594   PMID:26856660   PMID:26937964   PMID:26945717   PMID:26963625   PMID:26966090   PMID:26974661  
PMID:26984772   PMID:27005833   PMID:27107834   PMID:27109481   PMID:27129246   PMID:27129260   PMID:27131901   PMID:27184845   PMID:27335464   PMID:27358050   PMID:27363282   PMID:27373160  
PMID:27488898   PMID:27542691   PMID:27550848   PMID:27578791   PMID:27581360   PMID:27619993   PMID:27644413   PMID:27681176   PMID:27731369   PMID:27746211   PMID:27777310   PMID:27777311  
PMID:27923061   PMID:28049691   PMID:28060835   PMID:28186500   PMID:28193997   PMID:28273455   PMID:28351837   PMID:28364022   PMID:28604636   PMID:28663557   PMID:28916263   PMID:29030964  
PMID:29070836   PMID:29083488   PMID:29122885   PMID:29149533   PMID:29159818   PMID:29343483   PMID:29378327   PMID:29453291   PMID:29483301   PMID:29728617   PMID:29847803   PMID:29849099  
PMID:30061199   PMID:30073773   PMID:30089269   PMID:30109252   PMID:30335158   PMID:30352954   PMID:30373853   PMID:30599048   PMID:30614617   PMID:30635284   PMID:30706990   PMID:30718039  
PMID:30718289   PMID:31120998   PMID:31301160   PMID:31309149   PMID:31433978   PMID:31484851   PMID:31505214   PMID:31527620   PMID:31693883   PMID:31729420   PMID:31784538   PMID:31883537  
PMID:32023452   PMID:32040550   PMID:32326334   PMID:32429067   PMID:32443487   PMID:32703401   PMID:33121932   PMID:33125780   PMID:33323974   PMID:33332417   PMID:33712604   PMID:33888555  
PMID:33888560   PMID:34226527   PMID:34599818   PMID:34600885   PMID:34779419   PMID:35049495   PMID:35062859   PMID:35082200   PMID:35733999   PMID:35863637   PMID:36330928   PMID:36445537  
PMID:36624847   PMID:36726200   PMID:36747241   PMID:36977414   PMID:37204112   PMID:37266576   PMID:37402881   PMID:37497580   PMID:37536952   PMID:37905345   PMID:38229308   PMID:38281712  
PMID:38475919   PMID:38564635   PMID:38755149   PMID:38972757  


Genomics

Comparative Map Data
Cebpa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39734,818,718 - 34,821,353 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl734,818,718 - 34,821,353 (+)EnsemblGRCm39 Ensembl
GRCm38735,119,293 - 35,121,928 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,119,293 - 35,121,928 (+)EnsemblGRCm38mm10GRCm38
MGSCv37735,904,312 - 35,906,947 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36734,828,063 - 34,830,688 (+)NCBIMGSCv36mm8
Celera730,255,122 - 30,257,756 (+)NCBICelera
Cytogenetic Map7B2NCBI
cM Map721.02NCBI
CEBPA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381933,299,934 - 33,302,534 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1933,299,934 - 33,302,534 (-)EnsemblGRCh38hg38GRCh38
GRCh371933,790,840 - 33,793,440 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361938,482,776 - 38,485,160 (-)NCBINCBI36Build 36hg18NCBI36
Build 341938,482,775 - 38,485,160NCBI
Celera1930,484,405 - 30,486,995 (-)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1930,291,676 - 30,294,205 (-)NCBIHuRef
CHM1_11933,791,795 - 33,794,385 (-)NCBICHM1_1
T2T-CHM13v2.01935,819,706 - 35,822,306 (-)NCBIT2T-CHM13v2.0
Cebpa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8196,896,584 - 96,899,256 (+)NCBIGRCr8
mRatBN7.2187,759,631 - 87,762,303 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl187,759,433 - 87,762,412 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx193,165,821 - 93,168,493 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01101,631,805 - 101,634,477 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0194,924,121 - 94,926,793 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,363,492 - 91,366,164 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,363,492 - 91,366,164 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,493,857 - 92,495,245 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4187,626,111 - 87,627,499 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1187,704,351 - 87,705,428 (+)NCBI
Celera182,110,797 - 82,113,472 (+)NCBICelera
Cytogenetic Map1q21NCBI
Cebpa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554683,047,931 - 3,049,080 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554683,046,544 - 3,049,217 (-)NCBIChiLan1.0ChiLan1.0
CEBPA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22039,273,129 - 39,275,654 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11941,273,099 - 41,275,733 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01930,223,567 - 30,226,204 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11938,969,065 - 38,971,031 (-)NCBIpanpan1.1PanPan1.1panPan2
CEBPA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11118,846,252 - 118,851,045 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,249,214 - 118,251,848 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01119,446,691 - 119,449,313 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11119,007,283 - 119,009,910 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01118,633,880 - 118,636,501 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01119,692,609 - 119,695,231 (+)NCBIUU_Cfam_GSD_1.0
Cebpa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093499,129,664 - 9,132,348 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365702,513,561 - 2,516,213 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEBPA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl643,083,207 - 43,085,836 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1643,083,200 - 43,085,884 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,632,195 - 38,634,910 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CEBPA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1628,342,506 - 28,345,759 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl628,343,907 - 28,344,977 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660736,065,215 - 6,067,832 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cebpa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247949,809,007 - 9,813,418 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cebpa
107 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:570
Count of miRNA genes:377
Interacting mature miRNAs:434
Transcripts:ENSMUST00000042985
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
7394747asp3_maudiogenic seizure prone 3 (mouse)Not determined72730579836842367Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71872879439674033Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse

Markers in Region
Cebpa  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38735,119,429 - 35,120,068UniSTSGRCm38
MGSCv37735,904,448 - 35,905,087UniSTSGRCm37
Celera730,255,258 - 30,255,897UniSTS
Cytogenetic Map7B1UniSTS
cM Map712.0UniSTS
cM Map712.0UniSTS
M62362  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38735,120,676 - 35,120,834UniSTSGRCm38
MGSCv37735,905,695 - 35,905,853UniSTSGRCm37
Celera730,256,505 - 30,256,663UniSTS
Cytogenetic Map7B1UniSTS
cM Map712.0UniSTS
Whitehead/MRC_RH7447.22UniSTS
Whitehead_YAC7 UniSTS
UniSTS:235647  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38735,121,264 - 35,121,467UniSTSGRCm38
MGSCv37735,906,283 - 35,906,486UniSTSGRCm37
Celera730,257,092 - 30,257,295UniSTS
Cytogenetic Map7B1UniSTS
cM Map712.0UniSTS
BE096629  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38735,121,180 - 35,121,331UniSTSGRCm38
MGSCv37735,906,199 - 35,906,350UniSTSGRCm37
Celera730,257,008 - 30,257,159UniSTS
Cytogenetic Map7B1UniSTS
cM Map712.0UniSTS
PMC117301P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38735,118,493 - 35,118,728UniSTSGRCm38
MGSCv37735,903,512 - 35,903,747UniSTSGRCm37
Celera730,254,322 - 30,254,557UniSTS
Cytogenetic Map7B1UniSTS
cM Map712.0UniSTS
PMC117301P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38735,118,464 - 35,118,728UniSTSGRCm38
MGSCv37735,903,483 - 35,903,747UniSTSGRCm37
Celera730,254,293 - 30,254,557UniSTS
Cytogenetic Map7B1UniSTS
cM Map712.0UniSTS
RH141409  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38735,121,670 - 35,121,845UniSTSGRCm38
MGSCv37735,906,689 - 35,906,864UniSTSGRCm37
Celera730,257,498 - 30,257,673UniSTS
Cytogenetic Map7B1UniSTS
cM Map712.0UniSTS
PMC94247P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38735,120,357 - 35,120,438UniSTSGRCm38
MGSCv37735,905,376 - 35,905,457UniSTSGRCm37
Celera730,256,186 - 30,256,267UniSTS
Cytogenetic Map7B1UniSTS
cM Map712.0UniSTS
Cebpa  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38735,120,244 - 35,120,342UniSTSGRCm38
MGSCv37735,905,263 - 35,905,361UniSTSGRCm37
Celera730,256,073 - 30,256,171UniSTS
Cytogenetic Map7B1UniSTS
cM Map712.0UniSTS
Cebpa  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38735,120,238 - 35,120,426UniSTSGRCm38
MGSCv37735,905,257 - 35,905,445UniSTSGRCm37
Celera730,256,067 - 30,256,255UniSTS
Cytogenetic Map7B1UniSTS
M62362  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38735,121,512 - 35,121,652UniSTSGRCm38
MGSCv37735,906,531 - 35,906,671UniSTSGRCm37
Celera730,257,340 - 30,257,480UniSTS
Cytogenetic Map7B1UniSTS
Whitehead/MRC_RH7447.22UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000042985   ⟹   ENSMUSP00000096129
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl734,818,728 - 34,821,353 (+)Ensembl
GRCm38.p6 Ensembl735,119,303 - 35,121,928 (+)Ensembl
Ensembl Acc Id: ENSMUST00000205391   ⟹   ENSMUSP00000145942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl734,818,718 - 34,821,353 (+)Ensembl
GRCm38.p6 Ensembl735,119,293 - 35,121,928 (+)Ensembl
RefSeq Acc Id: NM_001287514   ⟹   NP_001274443
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39734,818,718 - 34,821,353 (+)NCBI
GRCm38735,119,293 - 35,121,928 (+)NCBI
Celera730,255,122 - 30,257,756 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001287515   ⟹   NP_001274444
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39734,818,718 - 34,821,353 (+)NCBI
GRCm38735,119,293 - 35,121,928 (+)NCBI
Celera730,255,122 - 30,257,756 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001287521   ⟹   NP_001274450
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39734,818,718 - 34,821,353 (+)NCBI
GRCm38735,119,293 - 35,121,928 (+)NCBI
Celera730,255,122 - 30,257,756 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001287523   ⟹   NP_001274452
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39734,818,718 - 34,821,353 (+)NCBI
GRCm38735,119,293 - 35,121,928 (+)NCBI
Celera730,255,122 - 30,257,756 (+)NCBI
Sequence:
RefSeq Acc Id: NM_007678   ⟹   NP_031704
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39734,818,718 - 34,821,353 (+)NCBI
GRCm38735,119,293 - 35,121,928 (+)ENTREZGENE
MGSCv37735,904,312 - 35,906,947 (+)RGD
Celera730,255,122 - 30,257,756 (+)RGD
cM Map7 ENTREZGENE
Sequence: