Cacna1a (calcium channel, voltage-dependent, P/Q type, alpha 1A subunit) - Rat Genome Database

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Gene: Cacna1a (calcium channel, voltage-dependent, P/Q type, alpha 1A subunit) Mus musculus
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Symbol: Cacna1a
Name: calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
RGD ID: 10265
MGI Page MGI
Description: Enables high voltage-gated calcium channel activity and voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels. Acts upstream of or within several processes, including G protein-coupled receptor signaling pathway; chemical synaptic transmission; and nervous system development. Located in dendrite and neuronal cell body. Part of voltage-gated calcium channel complex. Is active in glutamatergic synapse; postsynaptic membrane; and presynaptic active zone membrane. Is expressed in several structures, including central nervous system; dorsal root ganglion; heart; and trigeminal nerve. Used to study Lambert-Eaton myasthenic syndrome; brain disease (multiple); and episodic ataxia type 2. Human ortholog(s) of this gene implicated in brain disease (multiple) and episodic ataxia type 2. Orthologous to human CACNA1A (calcium voltage-gated channel subunit alpha1 A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: al; alpha1A; APCA; BI; brain calcium channel I; Caca1a; Cacn; Cacnl1a4; calcium channel, L type, alpha-1 polypeptide; calcium channel, P/Q type, alpha 1A; Cav2.1; Ccha; Ccha1a; EA2; FHM; HPCA; la; leaner; MHP; MHP1; nmf35; nmf352; P/Q-type calcium channel alpha1A subunit; rkr; rocker; s; SC; SCA6; smrl; tg; tottering; voltage-dependent P/Q-type calcium channel subunit alpha-1A; voltage-gated calcium channel subunit alpha Cav2.1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,065,257 - 85,366,880 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,065,268 - 85,366,875 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38884,338,631 - 84,640,251 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,338,639 - 84,640,246 (+)Ensemblmm10GRCm38
MGSCv37886,939,263 - 87,164,148 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36887,305,469 - 87,530,351 (+)NCBIMGSCv36mm8
Celera888,715,985 - 88,942,662 (+)NCBICelera
Cytogenetic Map8C2- C3NCBI
cM Map840.95NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
Aicardi-Goutieres Syndrome 4  (ISO)
alpha-mannosidosis  (ISO)
Alternating Hemiplegia of Childhood 1  (ISO)
amyotrophic lateral sclerosis  (ISO)
Ataxia  (IMP,ISO)
Auditory Neuropathy  (ISO)
autism spectrum disorder  (ISO)
cerebellar ataxia  (IAGP,ISO)
cerebral palsy  (ISO)
Charcot-Marie-Tooth disease dominant intermediate B  (ISO)
childhood absence epilepsy  (ISO)
childhood electroclinical syndrome  (IAGP)
developmental and epileptic encephalopathy 1  (ISO)
developmental and epileptic encephalopathy 2  (ISO)
developmental and epileptic encephalopathy 42  (ISO)
developmental and epileptic encephalopathy 52  (ISO)
Developmental Disabilities  (ISO)
disorder of sexual development  (ISO)
Dysarthria  (ISO)
epilepsy  (IMP,ISO)
episodic ataxia  (ISO)
episodic ataxia type 2  (IAGP,ISO)
exfoliation syndrome  (ISO)
familial hemiplegic migraine  (IAGP,ISO)
familial hemiplegic migraine 1  (ISO)
generalized dystonia  (IAGP)
generalized epilepsy  (ISO)
genetic disease  (ISO)
glutaric acidemia I  (ISO)
intellectual disability  (ISO)
Lambert-Eaton myasthenic syndrome  (IAGP)
Marshall-Smith syndrome  (ISO)
migraine  (ISO)
migraine with aura  (ISO)
myoclonic-atonic epilepsy  (ISO)
Nervous System Malformations  (ISO)
neurodevelopmental disorder with hypotonia, language delay, and skeletal defects with or without seizures  (ISO)
Neurodevelopmental Disorders  (ISO)
progressive bulbar palsy  (ISO)
spastic ataxia  (ISO)
Spastic Paraparesis  (ISO)
spinocerebellar ataxia type 6  (IAGP,ISO)
Spinocerebellar Ataxias  (ISO)
Sporadic Hemiplegic Migraine  (ISO)
subependymal giant cell astrocytoma  (ISO)
sudden infant death syndrome  (ISO)
temporal lobe epilepsy  (ISO)
Tremor  (ISO)
vascular dementia  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (EXP)
1,2-dimethylhydrazine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-palmitoylglycerol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxynon-2-enal  (EXP)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
allethrin  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (EXP)
aspartame  (EXP)
barium(0)  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bisphenol F  (EXP,ISO)
Butylparaben  (ISO)
cadmium dichloride  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
choline  (EXP)
cisplatin  (EXP)
clofibrate  (EXP)
clozapine  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
cypermethrin  (ISO)
DDE  (ISO)
DDT  (ISO)
diarsenic trioxide  (EXP)
dibutyl phthalate  (EXP,ISO)
dichlorine  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
enzacamene  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP)
fenvalerate  (ISO)
folic acid  (EXP)
gabapentin  (EXP,ISO)
gamma-aminobutyric acid  (ISO)
glyphosate  (ISO)
haloperidol  (EXP,ISO)
L-methionine  (EXP)
linuron  (ISO)
methotrexate  (ISO)
methoxychlor  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monosodium L-glutamate  (EXP)
N,N-diethyl-m-toluamide  (ISO)
N-ethyl-N-nitrosourea  (EXP)
N-methyl-D-aspartic acid  (EXP)
N-nitrosodiethylamine  (ISO)
nitric oxide  (ISO)
Nor-9-carboxy-delta9-THC  (ISO)
okadaic acid  (ISO)
ozone  (EXP,ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
permethrin  (ISO)
phenethyl caffeate  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
potassium chloride  (EXP,ISO)
prochloraz  (ISO)
procymidone  (ISO)
rotenone  (ISO)
sarin  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP,ISO)
succimer  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
Testosterone propionate  (EXP)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adult walking behavior  (IGI,IMP)
behavioral response to pain  (IMP)
calcium ion import  (ISO)
calcium ion import across plasma membrane  (IBA)
calcium ion transmembrane transport  (IEA,ISO,ISS)
calcium ion transport  (IEA,IMP,ISO)
calcium ion-regulated exocytosis of neurotransmitter  (IMP)
calcium-ion regulated exocytosis  (IMP)
cellular response to amyloid-beta  (ISO)
central nervous system neuron differentiation  (IMP)
cerebellar molecular layer development  (IMP)
cerebellar Purkinje cell differentiation  (IMP)
cerebellar Purkinje cell layer development  (IMP)
cerebellum maturation  (IMP)
chemical synaptic transmission  (IBA,IMP,ISO)
cholecystokinin signaling pathway  (IPI)
dendrite morphogenesis  (IMP)
establishment of localization in cell  (IMP)
G protein-coupled opioid receptor signaling pathway  (IMP)
gamma-aminobutyric acid secretion  (IMP)
gamma-aminobutyric acid signaling pathway  (IMP)
glucose homeostasis  (IMP)
hormone biosynthetic process  (IMP)
intracellular chloride ion homeostasis  (IMP)
locomotory behavior  (IEA)
membrane depolarization  (IMP)
modulation of chemical synaptic transmission  (ISO)
monoatomic ion transmembrane transport  (IEA)
monoatomic ion transport  (IEA)
musculoskeletal movement, spinal reflex action  (IMP)
negative regulation of hormone biosynthetic process  (IMP)
negative regulation of neuron apoptotic process  (IMP)
nervous system process  (IMP)
neuromuscular process  (IGI,IMP)
neuromuscular process controlling balance  (IMP)
neuromuscular synaptic transmission  (IMP)
neuron apoptotic process  (IMP)
neuron cellular homeostasis  (IMP)
neuron-neuron synaptic transmission  (IMP)
positive regulation of cytosolic calcium ion concentration  (IDA,ISO,ISS)
receptor clustering  (IMP)
regulation of acetylcholine secretion, neurotransmission  (IMP)
regulation of axonogenesis  (IMP)
regulation of calcium ion-dependent exocytosis  (IDA)
regulation of hormone levels  (IMP)
regulation of membrane potential  (IMP)
regulation of presynaptic cytosolic calcium ion concentration  (IEA)
regulation of sulfur amino acid metabolic process  (IMP)
regulation of transport  (IEA)
regulation of voltage-gated calcium channel activity  (ISO)
response to amyloid-beta  (ISO)
response to pain  (IEA,IMP)
rhythmic synaptic transmission  (IMP)
somatostatin signaling pathway  (IMP)
spinal cord motor neuron differentiation  (IMP)
synapse assembly  (IMP)
synaptic transmission, GABAergic  (IMP)
synaptic transmission, glutamatergic  (IMP)
system process  (IEA)
transmembrane transport  (IEA)
transmission of nerve impulse  (IMP)
vestibular nucleus development  (IMP)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
alfentanil pharmacodynamics pathway  (ISO)
bupivacaine pharmacodynamics pathway  (ISO)
buprenorphine pharmacodynamics pathway   (ISO)
calcium transport pathway   (ISO)
calcium/calcium-mediated signaling pathway  (ISO)
chloroprocaine pharmacodynamics pathway  (ISO)
citalopram pharmacodynamics pathway  (ISO)
cocaine pharmacodynamics pathway  (ISO)
codeine and morphine pharmacodynamics pathway  (ISO)
desipramine pharmacodynamics pathway  (ISO)
diphenoxylate pharmacodynamics pathway  (ISO)
escitalopram pharmacodynamics pathway  (ISO)
ethylmorphine pharmacodynamics pathway  (ISO)
fentanyl pharmacodynamics pathway  (ISO)
fluoxetine pharmacodynamics pathway  (ISO)
gliclazide pharmacodynamics pathway  (ISO)
glutamate signaling pathway  (IEA)
glyburide pharmacodynamics pathway  (ISO)
heroin pharmacodynamics pathway  (ISO)
hydrocodone pharmacodynamics pathway  (ISO)
hydromorphone pharmacodynamics pathway  (ISO)
imipramine pharmacodynamics pathway   (ISO)
insulin secretion pathway  (TAS)
levacetylmethadol pharmacodynamics pathway  (ISO)
levobupivacaine phgarmacodynamics pathway  (ISO)
levorphanol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
long term depression  (IEA)
mepivacaine pharmacodynamics pathway  (ISO)
methadone pharmacodynamics pathway   (ISO)
mitogen activated protein kinase signaling pathway  (IEA)
nalbuphine pharmacodynamics pathway  (ISO)
naloxone pharmacodynamics pathway  (ISO)
naltrexone pharmacodynamics pathway  (ISO)
nicotine pharmacodynamics pathway  (ISO)
oxybuprocaine pharmacodynamics pathway  (ISO)
oxycodone pharmacodynamics pathway  (ISO)
oxymorphone pharmacodynamics pathway  (ISO)
pentazocine pharmacodynamics pathway   (ISO)
potassium channel inhibitors pharmacodynamics pathway  (ISO)
prilocaine pharmacodynamics pathway  (ISO)
procaine pharmacodynamics pathway  (ISO)
remifentanil pharmacodynamics pathway  (ISO)
ropivacaine pharmacodynamics pathway  (ISO)
tramadol pharmacodynamics pathway   (ISO)
type 2 diabetes mellitus pathway  (IEA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal action potential  (IAGP)
abnormal axon morphology  (IAGP)
abnormal brain interneuron morphology  (IAGP)
abnormal brain morphology  (IAGP)
abnormal brain wave pattern  (IAGP)
abnormal brainstem morphology  (IAGP)
abnormal cerebellar granule cell morphology  (IAGP)
abnormal cerebellar molecular layer  (IAGP)
abnormal cerebellum external granule cell layer morphology  (IAGP)
abnormal cerebellum morphology  (IAGP)
abnormal channel response  (IAGP)
abnormal CNS synaptic transmission  (IAGP)
abnormal excitatory postsynaptic current amplitude  (IAGP)
abnormal excitatory postsynaptic currents  (IAGP)
abnormal excitatory postsynaptic potential  (IAGP)
abnormal gait  (IAGP)
abnormal glucose homeostasis  (IAGP)
abnormal inhibitory postsynaptic currents  (IAGP)
abnormal locomotor behavior  (IEA)
abnormal locomotor coordination  (IAGP)
abnormal maternal nurturing  (IAGP)
abnormal metabolism  (IAGP)
abnormal miniature endplate potential  (IAGP)
abnormal miniature excitatory postsynaptic currents  (IAGP)
abnormal motor capabilities/coordination/movement  (IAGP)
abnormal motor coordination/balance  (IAGP)
abnormal muscle electrophysiology  (IAGP)
abnormal nerve fiber response  (IAGP)
abnormal nervous system electrophysiology  (IAGP)
abnormal nervous system morphology  (IEA)
abnormal nervous system physiology  (IAGP)
abnormal neuron morphology  (IAGP)
abnormal nursing  (IAGP)
abnormal paired-pulse inhibition  (IAGP)
abnormal physiological response to xenobiotic  (IAGP)
abnormal PNS synaptic transmission  (IAGP)
abnormal postnatal growth/weight/body size  (IAGP)
abnormal posture  (IAGP)
abnormal Purkinje cell axon morphology  (IAGP)
abnormal Purkinje cell dendrite morphology  (IAGP)
abnormal Purkinje cell innervation  (IAGP)
abnormal Purkinje cell mitochondrial morphology  (IAGP)
abnormal Purkinje cell morphology  (IAGP)
abnormal response/metabolism to endogenous compounds  (IAGP)
abnormal seizure response to inducing agent  (IAGP)
abnormal somatosensory cortex physiology  (IAGP)
abnormal spike wave discharge  (IAGP)
abnormal spleen red pulp morphology  (IEA)
abnormal survival  (IEA)
abnormal synapse morphology  (IAGP)
abnormal synaptic acetylcholine release  (IAGP)
abnormal synaptic transmission  (IAGP)
absence seizures  (IAGP)
ataxia  (IAGP)
cerebellum atrophy  (IAGP)
cerebellum hypoplasia  (IEA)
circling  (IAGP)
clonic seizures  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone marrow cell number  (IEA)
decreased choline O-acetyltransferase activity  (IAGP)
decreased excitatory postsynaptic current amplitude  (IAGP)
decreased glutamic acid level  (IAGP)
decreased grip strength  (IAGP)
decreased litter size  (IEA)
decreased locomotor activity  (IAGP)
decreased nerve fiber response intensity  (IAGP)
decreased neurotransmitter release  (IAGP)
decreased Purkinje cell number  (IAGP)
decreased Purkinje cell size  (IAGP)
decreased survivor rate  (IEA)
decreased thermal nociceptive threshold  (IAGP)
decreased vertical activity  (IAGP)
disheveled coat  (IAGP)
dystonia  (IAGP)
enhanced behavioral response to xenobiotic  (IAGP)
enhanced paired-pulse facilitation  (IAGP)
environmentally induced seizures  (IAGP)
hemiplegia  (IAGP)
hyporesponsive to tactile stimuli  (IAGP)
impaired balance  (IAGP)
impaired coordination  (IAGP)
impaired fine motor coordination  (IAGP)
impaired limb coordination  (IAGP)
impaired righting response  (IAGP)
impaired swimming  (IAGP)
increased apoptosis  (IAGP)
increased brain tyrosine 3-monooxygenase activity  (IAGP)
increased cerebellar granule cell number  (IAGP)
increased cerebral infarct size  (IAGP)
increased excitatory postsynaptic current amplitude  (IAGP)
increased freezing behavior  (IEA)
increased glycine level  (IAGP)
increased neurotransmitter release  (IAGP)
increased noradrenaline level  (IAGP)
increased susceptibility to induced morbidity/mortality  (IAGP)
increased susceptibility to ischemic brain injury  (IAGP)
increased susceptibility to pharmacologically induced seizures  (IAGP)
increased susceptibility to xenobiotic induced morbidity/mortality  (IAGP)
increased taurine level  (IAGP)
infertility  (IAGP)
lethality at weaning, complete penetrance  (IAGP)
limb grasping  (IEA)
muscle spasm  (IAGP)
muscle weakness  (IAGP)
neonatal lethality, incomplete penetrance  (IEA)
no abnormal phenotype detected  (IAGP)
perinatal lethality, incomplete penetrance  (IEA)
postnatal lethality, complete penetrance  (IAGP)
premature death  (IAGP)
preweaning lethality, complete penetrance  (IAGP)
preweaning lethality, incomplete penetrance  (IAGP)
prolonged excitatory postsynaptic current decay time  (IAGP)
prolonged excitatory postsynaptic current rise time  (IAGP)
Purkinje cell degeneration  (IAGP)
reduced female fertility  (IAGP)
reduced fertility  (IAGP)
reduced male fertility  (IAGP)
respiratory failure  (IAGP)
seizures  (IAGP)
short stride length  (IAGP)
small cerebellum  (IAGP)
sporadic seizures  (IAGP)
thin cerebellar granule layer  (IAGP)
thin cerebellar molecular layer  (IAGP)
thymus atrophy  (IEA)
tremors  (IAGP)
weakness  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Genetic heterogeneity in Italian families with familial hemiplegic migraine. Carrera P, etal., Neurology. 1999 Jul 13;53(1):26-33.
2. Voltage-gated calcium channels. Catterall WA Cold Spring Harb Perspect Biol. 2011 Aug 1;3(8):a003947. doi: 10.1101/cshperspect.a003947.
3. Association between the alpha(1a) calcium channel gene CACNA1A and idiopathic generalized epilepsy. Chioza B, etal., Neurology 2001 May 8;56(9):1245-6.
4. The E1015K variant in the synprint region of the CaV2.1 channel alters channel function and is associated with different migraine phenotypes. Condliffe SB, etal., J Biol Chem. 2013 Nov 22;288(47):33873-83. doi: 10.1074/jbc.M113.497701. Epub 2013 Oct 9.
5. Mutations in the Cacnl1a4 calcium channel gene are associated with seizures, cerebellar degeneration, and ataxia in tottering and leaner mutant mice. Doyle J, etal., Mamm Genome. 1997 Feb;8(2):113-20.
6. Abundant expression and cytoplasmic aggregations of 1A voltage-dependent calcium channel protein associated with neurodegeneration in spinocerebellar ataxia type 6. Ishikawa K, etal., Hum Mol Genet. 1999 Jul;8(7):1185-93.
7. Sisters homozygous for the spinocerebellar ataxia type 6 (SCA6)/CACNA1A gene associated with different clinical phenotypes. Kato T, etal., Clin Genet 2000 Jul;58(1):69-73.
8. Novel splice site CACNA1A mutation causing episodic ataxia type 2. Kaunisto MA, etal., Neurogenetics 2004 Feb;5(1):69-73. Epub 2003 Oct 7.
9. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
10. MGDs mouse GO annotations MGD data from the GO Consortium
11. MGD IEA MGD IEA
12. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
13. Cloning and expression of a cardiac/brain beta subunit of the L-type calcium channel. Perez-Reyes E, etal., J Biol Chem 1992 Jan 25;267(3):1792-7.
14. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
15. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
16. Mouse MP Annotation Import Pipeline RGD automated import pipeline
17. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
19. The ataxic groggy rat has a missense mutation in the P/Q-type voltage-gated Ca(2+) channel alpha(1A) subunit gene and exhibits absence seizures. Tokuda S, etal., Brain Res. 2006 Dec 28;.
20. Regulation of calcium channel alpha(1A) subunit splice variant mRNAs in kainate-induced temporal lobe epilepsy. Vigues S, etal., Neurobiol Dis. 1999 Aug;6(4):288-301.
21. The role of voltage-gated calcium channels in pancreatic beta-cell physiology and pathophysiology. Yang SN and Berggren PO, Endocr Rev. 2006 Oct;27(6):621-76. Epub 2006 Jul 25.
22. Autosomal dominant cerebellar ataxia (SCA6) associated with small polyglutamine expansions in the alpha 1A-voltage-dependent calcium channel. Zhuchenko O, etal., Nat Genet. 1997 Jan;15(1):62-9.
Additional References at PubMed
PMID:572084   PMID:1279353   PMID:1306163   PMID:1355109   PMID:1469420   PMID:1485534   PMID:1486501   PMID:1512593   PMID:1572065   PMID:1670919   PMID:1686215   PMID:2271967  
PMID:2897649   PMID:2901364   PMID:3699253   PMID:4799944   PMID:4933322   PMID:4941467   PMID:5365621   PMID:5799428   PMID:6123371   PMID:6167317   PMID:6462226   PMID:6811784  
PMID:6933569   PMID:6945603   PMID:7145091   PMID:7581164   PMID:7697385   PMID:7834360   PMID:7845610   PMID:8077211   PMID:8100981   PMID:8158221   PMID:8220421   PMID:8229069  
PMID:8331216   PMID:8380766   PMID:8500431   PMID:8551348   PMID:8565963   PMID:8632762   PMID:8666294   PMID:8719615   PMID:8719807   PMID:8738138   PMID:8861630   PMID:8876222  
PMID:8889548   PMID:8910533   PMID:8929530   PMID:8957685   PMID:9013814   PMID:9191109   PMID:9345107   PMID:9433681   PMID:9514513   PMID:9562526   PMID:9614225   PMID:9639271  
PMID:9680377   PMID:9723790   PMID:9729301   PMID:9735950   PMID:9742139   PMID:9857013   PMID:9882694   PMID:10218773   PMID:10322048   PMID:10328888   PMID:10336181   PMID:10349636  
PMID:10350535   PMID:10381343   PMID:10395577   PMID:10446746   PMID:10469844   PMID:10515158   PMID:10515159   PMID:10611370   PMID:10627593   PMID:10630211   PMID:10670432   PMID:10686170  
PMID:10860780   PMID:10899223   PMID:10908603   PMID:10958785   PMID:11042159   PMID:11076861   PMID:11160387   PMID:11166370   PMID:11182254   PMID:11217851   PMID:11296258   PMID:11344116  
PMID:11700294   PMID:11718712   PMID:11742722   PMID:11756409   PMID:11780120   PMID:11860502   PMID:12023053   PMID:12040045   PMID:12065603   PMID:12150506   PMID:12151514   PMID:12372549  
PMID:12401561   PMID:12466851   PMID:12562906   PMID:12624181   PMID:12666195   PMID:12710975   PMID:12827191   PMID:12834873   PMID:13950100   PMID:14559153   PMID:14572439   PMID:14592860  
PMID:14610273   PMID:14667443   PMID:14724264   PMID:14767162   PMID:14973254   PMID:14990796   PMID:15003170   PMID:15050706   PMID:15090043   PMID:15175394   PMID:15175395   PMID:15370195  
PMID:15451373   PMID:15514988   PMID:15548652   PMID:15577901   PMID:15743764   PMID:15797555   PMID:15827027   PMID:15843617   PMID:15917267   PMID:16111830   PMID:16141072   PMID:16141073  
PMID:16144305   PMID:16242631   PMID:16256961   PMID:16327158   PMID:16359645   PMID:16364258   PMID:16381801   PMID:16386251   PMID:16472880   PMID:16474392   PMID:16540584   PMID:16602821  
PMID:16787652   PMID:16890369   PMID:16914686   PMID:16928863   PMID:16985003   PMID:16987237   PMID:17005620   PMID:17114649   PMID:17146767   PMID:17156092   PMID:17156361   PMID:17161543  
PMID:17188510   PMID:17291689   PMID:17376154   PMID:17439489   PMID:17478533   PMID:17513018   PMID:17823210   PMID:17927665   PMID:17968008   PMID:17982453   PMID:18001290   PMID:18023294  
PMID:18093175   PMID:18293354   PMID:18313230   PMID:18367436   PMID:18597946   PMID:18653245   PMID:18669535   PMID:18687887   PMID:18799693   PMID:18825664   PMID:18982062   PMID:19005038  
PMID:19073246   PMID:19104150   PMID:19248821   PMID:19285472   PMID:19345443   PMID:19351589   PMID:19422811   PMID:19446536   PMID:19467269   PMID:19484318   PMID:19609731   PMID:19850086  
PMID:19854154   PMID:19966779   PMID:20092572   PMID:20186955   PMID:20188150   PMID:20194127   PMID:20204399   PMID:20420856   PMID:20462503   PMID:20547676   PMID:20562017   PMID:20570694  
PMID:20670620   PMID:20735819   PMID:20845003   PMID:20937883   PMID:21150292   PMID:21228161   PMID:21267068   PMID:21411672   PMID:21440913   PMID:21490217   PMID:21628556   PMID:21718757  
PMID:21870131   PMID:21873635   PMID:21884752   PMID:22005682   PMID:22107844   PMID:22144569   PMID:22279211   PMID:22279216   PMID:22534482   PMID:22575052   PMID:22850483   PMID:22952933  
PMID:22956801   PMID:23054835   PMID:23115190   PMID:23326332   PMID:23338940   PMID:23382986   PMID:23426690   PMID:23426693   PMID:23451282   PMID:23516282   PMID:23545255   PMID:23577145  
PMID:23583179   PMID:23595603   PMID:23673147   PMID:23827678   PMID:23904597   PMID:23948231   PMID:23985897   PMID:24041537   PMID:24095980   PMID:24177210   PMID:24205277   PMID:24225482  
PMID:24355314   PMID:24394417   PMID:24411734   PMID:24453333   PMID:24523520   PMID:24583041   PMID:24758835   PMID:24768804   PMID:24843004   PMID:24849341   PMID:24849348   PMID:24882000  
PMID:24907493   PMID:24947601   PMID:24952961   PMID:25109669   PMID:25143538   PMID:25150573   PMID:25447936   PMID:25481823   PMID:25716839   PMID:25741235   PMID:25791619   PMID:25798587  
PMID:25811491   PMID:25843032   PMID:25855180   PMID:25892515   PMID:25907855   PMID:25917818   PMID:25979088   PMID:26002462   PMID:26032020   PMID:26034136   PMID:26063920   PMID:26208839  
PMID:26283199   PMID:26616403   PMID:26730403   PMID:26755585   PMID:26755594   PMID:26758833   PMID:26796036   PMID:26887908   PMID:27346147   PMID:27381005   PMID:27586650   PMID:27799552  
PMID:27805050   PMID:27840189   PMID:27857685   PMID:28363781   PMID:28377503   PMID:28386022   PMID:28430869   PMID:28510727   PMID:28671696   PMID:28688851   PMID:28786379   PMID:29166599  
PMID:29466725   PMID:29654190   PMID:29659809   PMID:29996090   PMID:30233329   PMID:30279196   PMID:30545599   PMID:30649209   PMID:30667565   PMID:30786075   PMID:30811980   PMID:30922876  
PMID:30940809   PMID:31040226   PMID:31253182   PMID:31299346   PMID:31337678   PMID:31477143   PMID:31628185   PMID:31645463   PMID:31800012   PMID:31824331   PMID:32027825   PMID:32325033  
PMID:32554809   PMID:32616470   PMID:33255506   PMID:33305180   PMID:33326350   PMID:33850125   PMID:34077522   PMID:34118418   PMID:34127816   PMID:34815492   PMID:35165395   PMID:35176221  
PMID:35238776   PMID:35305155   PMID:35324301   PMID:35655070   PMID:35729466   PMID:35853721   PMID:35863891   PMID:36078147   PMID:36417873   PMID:36682446   PMID:37141091   PMID:37142655  
PMID:37365500   PMID:37924146   PMID:38084749   PMID:38155373   PMID:38187761   PMID:38211534   PMID:38355793   PMID:38996073   PMID:40127100  


Genomics

Comparative Map Data
Cacna1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,065,257 - 85,366,880 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,065,268 - 85,366,875 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38884,338,631 - 84,640,251 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,338,639 - 84,640,246 (+)Ensemblmm10GRCm38
MGSCv37886,939,263 - 87,164,148 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36887,305,469 - 87,530,351 (+)NCBIMGSCv36mm8
Celera888,715,985 - 88,942,662 (+)NCBICelera
Cytogenetic Map8C2- C3NCBI
cM Map840.95NCBI
CACNA1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381913,206,442 - 13,506,479 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1913,206,442 - 13,624,489 (-)Ensemblhg38GRCh38
GRCh371913,317,256 - 13,617,293 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361913,178,256 - 13,478,274 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341913,179,114 - 13,478,317NCBI
Celera1913,207,639 - 13,507,772 (-)NCBICelera
Cytogenetic Map19p13.13NCBI
HuRef1912,889,634 - 13,189,171 (-)NCBIHuRef
CHM1_11913,318,256 - 13,618,198 (-)NCBICHM1_1
T2T-CHM13v2.01913,331,719 - 13,631,840 (-)NCBIT2T-CHM13v2.0
Cacna1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,425,560 - 40,724,810 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1940,425,560 - 40,724,599 (-)EnsemblGRCr8
mRatBN7.21923,520,741 - 23,819,971 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,520,741 - 23,823,225 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1930,343,968 - 30,567,151 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01930,998,339 - 31,221,535 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01933,221,032 - 33,444,209 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01925,453,236 - 25,749,550 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,526,751 - 25,749,550 (+)Ensemblrn6Rnor6.0
Rnor_5.01936,502,533 - 36,727,039 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41925,188,170 - 25,424,495 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1923,074,249 - 23,295,970 (-)NCBICelera
RGSC_v3.11925,194,294 - 25,429,321 (-)NCBI
Cytogenetic Map19q11NCBI
Cacna1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,183,442 - 32,400,595 (-)Ensembl
ChiLan1.0NW_00495541532,182,536 - 32,457,511 (-)NCBIChiLan1.0ChiLan1.0
CACNA1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22018,136,613 - 18,555,581 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11917,137,272 - 17,556,602 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01912,769,586 - 13,189,022 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11913,506,232 - 13,804,815 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1913,507,102 - 13,804,729 (-)EnsemblpanPan2panpan1.1
CACNA1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,747,087 - 49,036,627 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2048,821,025 - 49,036,032 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2048,694,916 - 48,910,172 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02049,339,396 - 49,554,755 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,280,733 - 49,553,801 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,549,923 - 48,765,101 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02048,976,279 - 49,191,383 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,219,720 - 49,435,029 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101960999
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,078,478 - 208,143,320 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366592,192,610 - 2,392,638 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366592,201,606 - 2,269,625 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl265,514,509 - 65,871,182 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1265,491,784 - 65,871,068 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,921,411 - 66,176,189 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNA1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,883,353 - 12,307,023 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660747,403,914 - 7,900,327 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacna1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624901708,234 - 932,643 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624901707,322 - 932,658 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Cacna1a
26819 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1418
Count of miRNA genes:644
Interacting mature miRNAs:810
Transcripts:ENSMUST00000121390, ENSMUST00000122053, ENSMUST00000126302, ENSMUST00000129620, ENSMUST00000130507, ENSMUST00000135382, ENSMUST00000141981, ENSMUST00000143215, ENSMUST00000144879, ENSMUST00000153691
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88079340489740987Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85474046188740637Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85515925889159407Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85913640493136404Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85629887290298872Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7158942790929226Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85233484386334843Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse

Markers in Region
RH143033  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,414,921 - 84,415,063UniSTSGRCm38
MGSCv37886,938,820 - 86,938,962UniSTSGRCm37
Celera888,715,542 - 88,715,684UniSTS
Cytogenetic Map8C3UniSTS
cM Map838.5UniSTS
UniSTS:224230  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,415,038 - 84,415,112UniSTSGRCm38
MGSCv37886,938,937 - 86,939,011UniSTSGRCm37
Celera888,715,659 - 88,715,733UniSTS
Cytogenetic Map8C3UniSTS
cM Map838.5UniSTS
Cacna1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,633,282 - 84,633,663UniSTSGRCm38
MGSCv37887,157,181 - 87,157,562UniSTSGRCm37
Celera888,935,547 - 88,935,921UniSTS
Cytogenetic Map8C3UniSTS
cM Map838.5UniSTS
Cacna1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,550,297 - 84,550,524UniSTSGRCm38
MGSCv37887,074,196 - 87,074,423UniSTSGRCm37
Celera888,852,636 - 88,852,863UniSTS
Cytogenetic Map8C3UniSTS
cM Map838.5UniSTS
Cacna1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,633,421 - 84,633,715UniSTSGRCm38
MGSCv37887,157,320 - 87,157,614UniSTSGRCm37
Celera888,935,679 - 88,935,973UniSTS
Cytogenetic Map8C3UniSTS
cM Map838.5UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB011275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB011276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB025352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB066608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB066609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC145556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC146603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC164557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU254963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV375776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY714490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U76716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000121390   ⟹   ENSMUSP00000112436
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,141,993 - 85,366,875 (+)Ensembl
GRCm38.p6 Ensembl884,415,364 - 84,640,246 (+)Ensembl
Ensembl Acc Id: ENSMUST00000122053   ⟹   ENSMUSP00000114055
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,142,006 - 85,366,692 (+)Ensembl
GRCm38.p6 Ensembl884,415,377 - 84,640,063 (+)Ensembl
Ensembl Acc Id: ENSMUST00000126302
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,298,426 - 85,307,091 (+)Ensembl
GRCm38.p6 Ensembl884,571,797 - 84,580,462 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129620
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,273,723 - 85,280,713 (+)Ensembl
GRCm38.p6 Ensembl884,547,094 - 84,554,084 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,365,620 - 85,366,063 (+)Ensembl
GRCm38.p6 Ensembl884,638,991 - 84,639,434 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135382
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,115,069 - 85,245,668 (+)Ensembl
GRCm38.p6 Ensembl884,388,440 - 84,519,039 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141981
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,328,073 - 85,339,671 (+)Ensembl
GRCm38.p6 Ensembl884,601,444 - 84,613,042 (+)Ensembl
Ensembl Acc Id: ENSMUST00000143215
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,328,060 - 85,338,709 (+)Ensembl
GRCm38.p6 Ensembl884,601,431 - 84,612,080 (+)Ensembl
Ensembl Acc Id: ENSMUST00000144879
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,328,099 - 85,361,153 (+)Ensembl
GRCm38.p6 Ensembl884,601,470 - 84,634,524 (+)Ensembl
Ensembl Acc Id: ENSMUST00000153691   ⟹   ENSMUSP00000158603
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,328,602 - 85,344,526 (+)Ensembl
GRCm38.p6 Ensembl884,601,973 - 84,617,897 (+)Ensembl
Ensembl Acc Id: ENSMUST00000215756   ⟹   ENSMUSP00000149242
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,142,413 - 85,366,875 (+)Ensembl
GRCm38.p6 Ensembl884,415,784 - 84,640,246 (+)Ensembl
Ensembl Acc Id: ENSMUST00000238337   ⟹   ENSMUSP00000158675
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,327,123 - 85,366,875 (+)Ensembl
GRCm38.p6 Ensembl884,600,494 - 84,640,246 (+)Ensembl
Ensembl Acc Id: ENSMUST00000238701   ⟹   ENSMUSP00000158803
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,065,268 - 85,366,875 (+)Ensembl
GRCm38.p6 Ensembl884,338,639 - 84,640,246 (+)Ensembl
RefSeq Acc Id: NM_001252059   ⟹   NP_001238988
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,141,993 - 85,366,878 (+)NCBI
GRCm38884,415,364 - 84,640,249 (+)NCBI
Celera888,715,985 - 88,942,662 (+)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252060   ⟹   NP_001238989
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,141,993 - 85,366,878 (+)NCBI
GRCm38884,415,364 - 84,640,249 (+)NCBI
Celera888,715,985 - 88,942,662 (+)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252061   ⟹   NP_001238990
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,141,993 - 85,366,878 (+)NCBI
GRCm38884,415,364 - 84,640,249 (+)NCBI
Celera888,715,985 - 88,942,662 (+)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_007578   ⟹   NP_031604
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,141,993 - 85,366,878 (+)NCBI
GRCm38884,415,364 - 84,640,249 (+)NCBI
MGSCv37886,939,263 - 87,164,148 (+)RGD
Celera888,715,985 - 88,942,662 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530587   ⟹   XP_006530650
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530588   ⟹   XP_006530651
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,642 - 84,640,229 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530589   ⟹   XP_006530652
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530590   ⟹   XP_006530653
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530591   ⟹   XP_006530654
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530592   ⟹   XP_006530655
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530593   ⟹   XP_006530656
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,229 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530594   ⟹   XP_006530657
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530595   ⟹   XP_006530658
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530596   ⟹   XP_006530659
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,229 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530597   ⟹   XP_006530660
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,337 (+)NCBI
GRCm38884,338,643 - 84,639,708 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530598   ⟹   XP_006530661
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,229 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530599   ⟹   XP_006530662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,872 (+)NCBI
GRCm38884,338,643 - 84,640,243 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530600   ⟹   XP_006530663
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,229 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530601   ⟹   XP_006530664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,063 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530602   ⟹   XP_006530665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,642 - 84,640,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530603   ⟹   XP_006530666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530605   ⟹   XP_006530668
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,262 - 85,344,509 (+)NCBI
GRCm38884,338,637 - 84,617,880 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530609   ⟹   XP_006530672
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,257 - 85,328,104 (+)NCBI
GRCm38884,338,632 - 84,601,475 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248285   ⟹   XP_011246587
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243260   ⟹   XP_030099120
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,858 (+)NCBI
GRCm38884,338,643 - 84,640,229 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243261   ⟹   XP_030099121
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243262   ⟹   XP_030099122
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
GRCm38884,338,643 - 84,640,063 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153732   ⟹   XP_036009625
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,269 - 85,366,880 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153733   ⟹   XP_036009626
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,257 - 85,327,199 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947221
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,268 - 85,366,880 (+)NCBI
GRCm38884,338,642 - 84,640,251 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947222
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,268 - 85,366,880 (+)NCBI
GRCm38884,338,642 - 84,640,251 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947223
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,257 - 85,360,154 (+)NCBI
GRCm38884,338,632 - 84,629,921 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947224
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,257 - 85,360,154 (+)NCBI
GRCm38884,338,632 - 84,629,921 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947226
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,258 - 85,338,991 (+)NCBI
GRCm38884,338,633 - 84,612,362 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947227
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,257 - 85,360,154 (+)NCBI
GRCm38884,338,631 - 84,629,921 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934753
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,065,258 - 85,360,154 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001238988 (Get FASTA)   NCBI Sequence Viewer  
  NP_001238989 (Get FASTA)   NCBI Sequence Viewer  
  NP_001238990 (Get FASTA)   NCBI Sequence Viewer  
  NP_031604 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530650 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530651 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530652 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530653 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530654 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530655 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530656 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530657 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530658 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530659 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530660 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530661 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530662 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530663 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530664 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530665 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530666 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530668 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530672 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246587 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099120 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099121 (Get FASTA)   NCBI Sequence Viewer  
  XP_030099122 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009625 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009626 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC52940 (Get FASTA)   NCBI Sequence Viewer  
  AAW56205 (Get FASTA)   NCBI Sequence Viewer  
  BAA33545 (Get FASTA)   NCBI Sequence Viewer  
  BAA33546 (Get FASTA)   NCBI Sequence Viewer  
  BAA84110 (Get FASTA)   NCBI Sequence Viewer  
  BAB85611 (Get FASTA)   NCBI Sequence Viewer  
  BAB85612 (Get FASTA)   NCBI Sequence Viewer  
  BAC35067 (Get FASTA)   NCBI Sequence Viewer  
  BAE27814 (Get FASTA)   NCBI Sequence Viewer  
  BAE27823 (Get FASTA)   NCBI Sequence Viewer  
  BAE27952 (Get FASTA)   NCBI Sequence Viewer  
  BAE28080 (Get FASTA)   NCBI Sequence Viewer  
  EDL10943 (Get FASTA)   NCBI Sequence Viewer  
  EDL10944 (Get FASTA)   NCBI Sequence Viewer  
  EDL10945 (Get FASTA)   NCBI Sequence Viewer  
  EDL10946 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000112436
  ENSMUSP00000112436.2
  ENSMUSP00000114055
  ENSMUSP00000158803
GenBank Protein P97445 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_031604   ⟸   NM_007578
- Peptide Label: isoform 1
- UniProtKB: Q2TPN3 (UniProtKB/Swiss-Prot),   P97445 (UniProtKB/Swiss-Prot),   Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001238989   ⟸   NM_001252060
- Peptide Label: isoform 3
- UniProtKB: Q8R5M7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001238990   ⟸   NM_001252061
- Peptide Label: isoform 4
- UniProtKB: Q8R5M6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001238988   ⟸   NM_001252059
- Peptide Label: isoform 2
- UniProtKB: E9Q1R5 (UniProtKB/TrEMBL),   Q3UHA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530672   ⟸   XM_006530609
- Peptide Label: isoform X24
- Sequence:
RefSeq Acc Id: XP_006530668   ⟸   XM_006530605
- Peptide Label: isoform X23
- Sequence:
RefSeq Acc Id: XP_006530650   ⟸   XM_006530587
- Peptide Label: isoform X1
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530664   ⟸   XM_006530601
- Peptide Label: isoform X15
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530651   ⟸   XM_006530588
- Peptide Label: isoform X2
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530655   ⟸   XM_006530592
- Peptide Label: isoform X6
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530656   ⟸   XM_006530593
- Peptide Label: isoform X7
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530665   ⟸   XM_006530602
- Peptide Label: isoform X18
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530658   ⟸   XM_006530595
- Peptide Label: isoform X9
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530659   ⟸   XM_006530596
- Peptide Label: isoform X10
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530660   ⟸   XM_006530597
- Peptide Label: isoform X11
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530661   ⟸   XM_006530598
- Peptide Label: isoform X12
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530652   ⟸   XM_006530589
- Peptide Label: isoform X3
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530654   ⟸   XM_006530591
- Peptide Label: isoform X5
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530663   ⟸   XM_006530600
- Peptide Label: isoform X14
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530653   ⟸   XM_006530590
- Peptide Label: isoform X4
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530657   ⟸   XM_006530594
- Peptide Label: isoform X8
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530662   ⟸   XM_006530599
- Peptide Label: isoform X13
- UniProtKB: A0A571BET0 (UniProtKB/TrEMBL),   Q3UHN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530666   ⟸   XM_006530603
- Peptide Label: isoform X20
- UniProtKB: Q8R5M7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246587   ⟸   XM_011248285
- Peptide Label: isoform X19
- UniProtKB: Q8R5M7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030099121   ⟸   XM_030243261
- Peptide Label: isoform X21
- UniProtKB: Q8R5M7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030099120   ⟸   XM_030243260
- Peptide Label: isoform X17
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030099122   ⟸   XM_030243262
- Peptide Label: isoform X22
- UniProtKB: Q8R5M7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000158675   ⟸   ENSMUST00000238337
Ensembl Acc Id: ENSMUSP00000158803   ⟸   ENSMUST00000238701
Ensembl Acc Id: ENSMUSP00000112436   ⟸   ENSMUST00000121390
Ensembl Acc Id: ENSMUSP00000158603   ⟸   ENSMUST00000153691
Ensembl Acc Id: ENSMUSP00000149242   ⟸   ENSMUST00000215756
Ensembl Acc Id: ENSMUSP00000114055   ⟸   ENSMUST00000122053
RefSeq Acc Id: XP_036009626   ⟸   XM_036153733
- Peptide Label: isoform X24
RefSeq Acc Id: XP_036009625   ⟸   XM_036153732
- Peptide Label: isoform X16
- UniProtKB: Q3UHN4 (UniProtKB/TrEMBL)
Protein Domains
Ion transport   Voltage-dependent calcium channel alpha-1 subunit   Voltage-dependent L-type calcium channel IQ-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97445-F1-model_v2 AlphaFold P97445 1-2368 view protein structure

Promoters
RGD ID:8667665
Promoter ID:EPDNEW_M11864
Type:initiation region
Name:Cacna1a_1
Description:Mus musculus calcium channel, voltage-dependent, P/Q type, alpha1A subunit , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11865  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38884,415,385 - 84,415,445EPDNEW
RGD ID:8667667
Promoter ID:EPDNEW_M11865
Type:initiation region
Name:Cacna1a_2
Description:Mus musculus calcium channel, voltage-dependent, P/Q type, alpha1A subunit , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11864  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38884,601,471 - 84,601,531EPDNEW
RGD ID:6842870
Promoter ID:MM_KWN:55069
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Liver
Transcripts:ENSMUST00000038122,   ENSMUST00000122053,   NM_007578
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36886,938,321 - 86,939,792 (+)MPROMDB
RGD ID:6842876
Promoter ID:MM_KWN:55070
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain
Transcripts:UC009MMM.1,   UC009MMN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36886,984,716 - 86,985,592 (+)MPROMDB
RGD ID:6842873
Promoter ID:MM_KWN:55071
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000077932
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,070,391 - 87,070,891 (+)MPROMDB
RGD ID:6848265
Promoter ID:MM_ACW:48221
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:CACNA1A.GSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,091,091 - 87,091,591 (+)MPROMDB
RGD ID:6842875
Promoter ID:MM_KWN:55072
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000077961
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,095,791 - 87,096,291 (+)MPROMDB
RGD ID:6842878
Promoter ID:MM_KWN:55074
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain
Transcripts:OTTMUST00000077962,   OTTMUST00000077963,   OTTMUST00000077965,   UC009MMQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,124,566 - 87,125,717 (+)MPROMDB
RGD ID:6842874
Promoter ID:MM_KWN:55077
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Liver,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000077964
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,162,591 - 87,163,382 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109482 AgrOrtholog
Ensembl Genes ENSMUSG00000034656 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000121390 ENTREZGENE
  ENSMUST00000121390.8 UniProtKB/Swiss-Prot
  ENSMUST00000122053 ENTREZGENE
  ENSMUST00000238701 ENTREZGENE
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot
  1.20.120.350 UniProtKB/Swiss-Prot
  6.10.250.2180 UniProtKB/Swiss-Prot
  6.10.250.2500 UniProtKB/Swiss-Prot
InterPro CACNA1A UniProtKB/Swiss-Prot
  GPHH_dom UniProtKB/Swiss-Prot
  Ion_trans_dom UniProtKB/Swiss-Prot
  VDCC_a1su_IQ UniProtKB/Swiss-Prot
  VDCC_alpha-1_subunit UniProtKB/Swiss-Prot
  VDCCAlpha1 UniProtKB/Swiss-Prot
  Volt_channel_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:12286 UniProtKB/Swiss-Prot
MGD MGI:109482 ENTREZGENE
NCBI Gene 12286 ENTREZGENE
PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1 UniProtKB/Swiss-Prot
  VOLTAGE-DEPENDENT P/Q-TYPE CALCIUM CHANNEL SUBUNIT ALPHA-1A UniProtKB/Swiss-Prot
Pfam Ca_chan_IQ UniProtKB/Swiss-Prot
  GPHH UniProtKB/Swiss-Prot
  Ion_trans UniProtKB/Swiss-Prot
PhenoGen Cacna1a PhenoGen
PRINTS CACHANNEL UniProtKB/Swiss-Prot
  PQVDCCALPHA1 UniProtKB/Swiss-Prot
SMART Ca_chan_IQ UniProtKB/Swiss-Prot
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/Swiss-Prot
UniProt A0A1L1SQZ2_MOUSE UniProtKB/TrEMBL
  A0A571BE75_MOUSE UniProtKB/TrEMBL
  A0A571BEF0_MOUSE UniProtKB/TrEMBL
  A0A571BET0 ENTREZGENE, UniProtKB/TrEMBL
  CAC1A_MOUSE UniProtKB/Swiss-Prot
  E9Q1R5 ENTREZGENE, UniProtKB/TrEMBL
  P97445 ENTREZGENE
  Q2TPN3 ENTREZGENE
  Q3UHA5 ENTREZGENE, UniProtKB/TrEMBL
  Q3UHN4 ENTREZGENE, UniProtKB/TrEMBL
  Q8C734_MOUSE UniProtKB/TrEMBL
  Q8R5M6 ENTREZGENE, UniProtKB/TrEMBL
  Q8R5M7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q2TPN3 UniProtKB/Swiss-Prot