Bsg (basigin) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Bsg (basigin) Mus musculus
Analyze
Symbol: Bsg
Name: basigin
RGD ID: 10248
MGI Page MGI
Description: Predicted to enable signaling receptor activity and virus receptor activity. Involved in neural retina development; photoreceptor cell maintenance; and spermatogenesis. Located in several cellular components, including acrosomal membrane; photoreceptor inner segment; and photoreceptor outer segment. Is expressed in several structures, including alimentary system; brain; early conceptus; eye; and reproductive system. Orthologous to human BSG (basigin (Ok blood group)).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5A11/Basigin; AI115436; AI325119; basic immunoglobulin superfamily; CD147; EMM; EMMPRIN; gp 42; HT-7; HT7 antigen; membrane glycoprotein gp42; neuro; neurothelin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,540,192 - 79,547,813 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,540,325 - 79,547,803 (+)EnsemblGRCm39 Ensembl
GRCm381079,704,358 - 79,711,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,704,491 - 79,711,969 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,167,103 - 79,174,724 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,107,629 - 79,115,022 (+)NCBIMGSCv36mm8
Celera1080,718,673 - 80,726,294 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-cotinine  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
3-chloropropane-1,2-diol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP)
aldrin  (EXP)
alpha-pinene  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzatropine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (ISO)
butan-1-ol  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
cannabidiol  (ISO)
carfilzomib  (ISO)
chloroethene  (EXP)
chloropicrin  (ISO)
chlorpyrifos  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
clofibrate  (EXP,ISO)
cobalt dichloride  (ISO)
cordycepin  (ISO)
corilagin  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
CU-O LINKAGE  (ISO)
curcumin  (EXP)
cyclophosphamide  (EXP)
deguelin  (ISO)
diarsenic trioxide  (ISO)
dibenziodolium  (ISO)
dibutyl phthalate  (ISO)
diethylstilbestrol  (EXP)
diuron  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
flavonoids  (ISO)
folic acid  (EXP)
folpet  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (ISO)
genistein  (EXP)
gentamycin  (ISO)
glyphosate  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
lead diacetate  (EXP)
lead(0)  (EXP)
lipopolysaccharide  (ISO)
methotrexate  (ISO)
microcystin-LR  (EXP)
N(6),N(6)-dimethyladenosine  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N6-(2-Hydroxyethyl)adenosine  (ISO)
ozone  (ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
pioglitazone  (ISO)
pirinixic acid  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
solasodine  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thifluzamide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
uridine 5'-monophosphate  (ISO)
valproic acid  (ISO)
zinc acetate  (EXP)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal cone electrophysiology  (IAGP)
abnormal efferent ductules of testis morphology  (IAGP)
abnormal epididymis morphology  (IAGP)
abnormal liver morphology  (IAGP)
abnormal renal glomerulus morphology  (IAGP)
abnormal rod electrophysiology  (IAGP)
abnormal seminiferous tubule epithelium morphology  (IAGP)
abnormal seminiferous tubule morphology  (IAGP)
abnormal Sertoli cell barrier morphology  (IAGP)
abnormal spermatocyte morphology  (IAGP)
abnormal spermatogenesis  (IAGP)
abnormal T cell activation  (IAGP)
abnormal testis morphology  (IAGP)
absent retina cone cells  (IAGP)
absent retina rod cells  (IAGP)
albuminuria  (IAGP)
arrest of male meiosis  (IAGP)
arrest of spermatogenesis  (IAGP)
azoospermia  (IAGP)
decreased b-wave amplitude  (IAGP)
decreased body weight  (IAGP)
decreased circulating complement protein level  (IAGP)
decreased double-positive T cell number  (IAGP)
decreased male germ cell number  (IAGP)
decreased single-positive T cell number  (IAGP)
decreased testis weight  (IAGP)
decreased thymocyte number  (IAGP)
decreased thymus weight  (IAGP)
disorganized photoreceptor outer segment  (IAGP)
ectopic Sertoli cells  (IAGP)
embryonic lethality at implantation, incomplete penetrance  (IAGP)
expanded mesangial matrix  (IAGP)
female infertility  (IAGP)
glomerulonephritis  (IAGP)
increased b-wave latency  (IAGP)
increased kidney weight  (IAGP)
increased male germ cell apoptosis  (IAGP)
increased mesangial cell number  (IAGP)
increased spleen weight  (IAGP)
increased splenocyte number  (IAGP)
increased susceptibility to age-related retinal degeneration  (IAGP)
increased susceptibility to systemic lupus erythematosus  (IAGP)
increased T cell proliferation  (IAGP)
increased T-helper 17 cell number  (IAGP)
interstitial pneumonia  (IAGP)
male infertility  (IAGP)
multinucleated giant male germ cells  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
respiratory distress  (IAGP)
retina photoreceptor degeneration  (IAGP)
short photoreceptor outer segment  (IAGP)
small liver  (IAGP)
small testis  (IAGP)
thin retina outer nuclear layer  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Emmprin and survivin predict response and survival following cisplatin-containing chemotherapy in patients with advanced bladder cancer. Als AB, etal., Clin Cancer Res. 2007 Aug 1;13(15 Pt 1):4407-14.
2. Matrix metalloproteinase induction by EMMPRIN in experimental focal cerebral ischemia. Burggraf D, etal., Eur J Neurosci. 2005 Jul;22(1):273-7.
3. Increasing expression of extracellular matrix metalloprotease inducer in ovary tumors: tissue microarray analysis of immunostaining score with clinicopathological parameters. Jin JS, etal., Int J Gynecol Pathol. 2006 Apr;25(2):140-6.
4. EMMPRIN expression as a prognostic factor in radiotherapy of cervical cancer. Ju XZ, etal., Clin Cancer Res. 2008 Jan 15;14(2):494-501.
5. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
6. Female sterility in mice lacking the basigin gene, which encodes a transmembrane glycoprotein belonging to the immunoglobulin superfamily. Kuno N, etal., FEBS Lett 1998 Mar 27;425(2):191-4.
7. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
8. MGDs mouse GO annotations MGD data from the GO Consortium
9. MGD IEA MGD IEA
10. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
11. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
12. Tumor collagenase stimulatory factor (TCSF) expression and localization in human lung and breast cancers. Polette M, etal., J Histochem Cytochem. 1997 May;45(5):703-9.
13. Comparative maps of human 19p13.3 and mouse chromosome 10 allow identification of sequences at evolutionary breakpoints. Puttagunta R, etal., Genome Res 2000 Sep;10(9):1369-80.
14. Mouse MP Annotation Import Pipeline RGD automated import pipeline
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. Association of EMMPRIN and fascin expression in renal cell carcinoma: correlation with clinicopathological parameters. Tsai WC, etal., World J Urol. 2007 Mar;25(1):73-80. Epub 2006 Sep 23.
17. Association of extracellular matrix metalloproteinase inducer in endometrial carcinoma with patient outcomes and clinicopathogenesis using monoclonal antibody 12C3. Ueda K, etal., Oncol Rep. 2007 Apr;17(4):731-5.
18. Inhibition of CD147 expression reduces tumor cell invasion in human prostate cancer cell line via RNA interference. Wang L, etal., Cancer Biol Ther. 2006 Jun;5(6):608-14. Epub 2006 Jun 5.
19. [Expressions of CD147 and matrix metalloproteinase-2 in breast cancer and their correlations to prognosis] Zhou S, etal., Ai Zheng. 2005 Jul;24(7):874-9.
Additional References at PubMed
PMID:1347477   PMID:1617216   PMID:1783610   PMID:2032306   PMID:2361961   PMID:2697642   PMID:7851892   PMID:8148376   PMID:8333335   PMID:8576084   PMID:8603097   PMID:8694829  
PMID:8812488   PMID:9245724   PMID:9501026   PMID:9572580   PMID:9639355   PMID:10349636   PMID:10458027   PMID:10922068   PMID:10967074   PMID:11042159   PMID:11076861   PMID:11273674  
PMID:11853760   PMID:11882021   PMID:11908948   PMID:11994445   PMID:12056458   PMID:12211060   PMID:12451109   PMID:12477932   PMID:12558975   PMID:12601063   PMID:12707016   PMID:12792908  
PMID:12815621   PMID:12904583   PMID:12939332   PMID:14606962   PMID:14610273   PMID:15037112   PMID:15095333   PMID:15102471   PMID:15464995   PMID:15489334   PMID:15724816   PMID:15741177  
PMID:15751084   PMID:15761851   PMID:15782199   PMID:15972687   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16612830   PMID:16702020   PMID:16754299   PMID:16887049   PMID:17307908  
PMID:17579119   PMID:17693120   PMID:17709990   PMID:18164515   PMID:18379992   PMID:18385447   PMID:18456655   PMID:18761711   PMID:18832103   PMID:19125248   PMID:19144954   PMID:19160100  
PMID:19443639   PMID:19521500   PMID:19758589   PMID:19760495   PMID:19779140   PMID:20042538   PMID:20369361   PMID:20388736   PMID:20392797   PMID:20538003   PMID:20693392   PMID:21228176  
PMID:21267068   PMID:21281789   PMID:21320284   PMID:21343160   PMID:21441138   PMID:21570464   PMID:21641389   PMID:21670277   PMID:21747213   PMID:21777561   PMID:21792931   PMID:21873635  
PMID:21930917   PMID:22020146   PMID:22170561   PMID:22451502   PMID:22480370   PMID:22678117   PMID:22736280   PMID:23178078   PMID:23642811   PMID:23727514   PMID:23906756   PMID:24391450  
PMID:24932516   PMID:24970041   PMID:24994937   PMID:25149188   PMID:25447507   PMID:25501684   PMID:25550208   PMID:25661002   PMID:25826454   PMID:25891969   PMID:25957687   PMID:26084217  
PMID:26201021   PMID:26208397   PMID:26284589   PMID:26416452   PMID:26559755   PMID:26916734   PMID:27038546   PMID:27041581   PMID:27075451   PMID:27113764   PMID:27133068   PMID:27179789  
PMID:27388991   PMID:27649573   PMID:27815658   PMID:27869218   PMID:27902973   PMID:27917946   PMID:28378742   PMID:28571672   PMID:28612997   PMID:28661035   PMID:29056295   PMID:29104472  
PMID:29154780   PMID:29356040   PMID:29423001   PMID:29642635   PMID:30347750   PMID:30539414   PMID:30550785   PMID:30949512   PMID:30988302   PMID:31014956   PMID:31291257   PMID:31837519  
PMID:31900457   PMID:32063360   PMID:32112484   PMID:32252487   PMID:32290105   PMID:32317318   PMID:32325033   PMID:32366134   PMID:32554809   PMID:32903542   PMID:32968061   PMID:33008593  
PMID:33490072   PMID:33587355   PMID:34106247   PMID:34759371   PMID:35008603   PMID:35608790   PMID:35676454   PMID:35964097   PMID:36114006   PMID:36293380   PMID:36417873   PMID:36459880  
PMID:36594096   PMID:36595342   PMID:37700592   PMID:37955149   PMID:38040091   PMID:38139173   PMID:38166463   PMID:38187761   PMID:38318368   PMID:38725999   PMID:38824220  


Genomics

Comparative Map Data
Bsg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,540,192 - 79,547,813 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,540,325 - 79,547,803 (+)EnsemblGRCm39 Ensembl
GRCm381079,704,358 - 79,711,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,704,491 - 79,711,969 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,167,103 - 79,174,724 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,107,629 - 79,115,022 (+)NCBIMGSCv36mm8
Celera1080,718,673 - 80,726,294 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
BSG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819571,283 - 583,493 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19571,277 - 583,494 (+)EnsemblGRCh38hg38GRCh38
GRCh3719571,283 - 583,493 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619522,325 - 534,493 (+)NCBINCBI36Build 36hg18NCBI36
Build 3419522,324 - 534,492NCBI
Celera19234,501 - 246,669 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef19342,018 - 354,031 (+)NCBIHuRef
CHM1_119570,866 - 583,082 (+)NCBICHM1_1
T2T-CHM13v2.019525,174 - 537,384 (+)NCBIT2T-CHM13v2.0
Bsg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,643,788 - 10,651,005 (-)NCBIGRCr8
mRatBN7.279,993,170 - 10,000,387 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,993,170 - 10,000,387 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,874,130 - 12,881,349 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,752,211 - 14,759,430 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,611,541 - 12,618,758 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,875,536 - 12,882,753 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,875,537 - 12,882,753 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0713,044,572 - 13,051,789 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4711,507,914 - 11,515,132 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1711,507,913 - 11,515,056 (-)NCBI
Celera78,166,570 - 8,173,787 (-)NCBICelera
Cytogenetic Map7q11NCBI
Bsg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554957,148,806 - 7,156,296 (-)NCBIChiLan1.0ChiLan1.0
BSG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2204,897,258 - 4,908,073 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,136,030 - 4,146,843 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl19539,815 - 551,456 (+)Ensemblpanpan1.1panPan2
BSG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,942,703 - 57,951,089 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,943,276 - 57,951,061 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,745,480 - 57,753,845 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02058,686,165 - 58,694,560 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,686,156 - 58,698,895 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,739,806 - 57,748,184 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02058,219,731 - 58,228,095 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02058,422,924 - 58,431,329 (-)NCBIUU_Cfam_GSD_1.0
Bsg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,644,988 - 217,653,120 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588181,576 - 189,287 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936588181,688 - 189,795 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BSG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1277,735,586 - 77,743,451 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BSG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16309,579 - 320,209 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl6309,506 - 321,785 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660818,757,164 - 8,768,688 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bsg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,913,099 - 7,920,804 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248287,913,297 - 7,920,891 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bsg
160 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1086
Count of miRNA genes:351
Interacting mature miRNAs:400
Transcripts:ENSMUST00000067036, ENSMUST00000105381, ENSMUST00000178383, ENSMUST00000179201, ENSMUST00000179781, ENSMUST00000180235
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7398721682491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse

Markers in Region
RH135862  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381079,709,676 - 79,710,295UniSTSGRCm38
MGSCv371079,172,421 - 79,173,040UniSTSGRCm37
Celera1080,723,991 - 80,724,610UniSTS
Cytogenetic Map10C1UniSTS
cM Map1042.4UniSTS
Bsg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371079,173,627 - 79,174,475UniSTSGRCm37
MGSCv37X89,410,822 - 89,411,099UniSTSGRCm37
CeleraX79,105,311 - 79,105,588UniSTS
Celera1080,725,197 - 80,726,045UniSTS
Cytogenetic Map10C1UniSTS
cM Map1042.4UniSTS
cM Map1042.4UniSTS
AI325119  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381079,711,618 - 79,711,723UniSTSGRCm38
MGSCv371079,174,363 - 79,174,468UniSTSGRCm37
Celera1080,725,933 - 80,726,038UniSTS
Cytogenetic Map10C1UniSTS
cM Map1042.4UniSTS
Whitehead/MRC_RH10911.23UniSTS
Whitehead/MRC_RH10914.83UniSTS
Bsg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10C1UniSTS
Bsg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10C1UniSTS
Bsg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381079,710,882 - 79,711,730UniSTSGRCm38
GRCm38X92,165,483 - 92,165,760UniSTSGRCm38
MGSCv371079,173,627 - 79,174,475UniSTSGRCm37
MGSCv37X89,410,822 - 89,411,099UniSTSGRCm37
Celera1080,725,197 - 80,726,045UniSTS
CeleraX79,105,311 - 79,105,588UniSTS
Cytogenetic MapXC2-C3UniSTS
Cytogenetic Map10C1UniSTS
cM Map1042.4UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC151828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY089967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D00611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D82019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S63813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y16258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000067036   ⟹   ENSMUSP00000070751
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,540,334 - 79,547,729 (+)Ensembl
GRCm38.p6 Ensembl1079,704,500 - 79,711,895 (+)Ensembl
Ensembl Acc Id: ENSMUST00000105381   ⟹   ENSMUSP00000101020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,545,432 - 79,547,803 (+)Ensembl
GRCm38.p6 Ensembl1079,709,598 - 79,711,969 (+)Ensembl
Ensembl Acc Id: ENSMUST00000178383   ⟹   ENSMUSP00000137126
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,540,404 - 79,547,657 (+)Ensembl
GRCm38.p6 Ensembl1079,704,570 - 79,711,823 (+)Ensembl
Ensembl Acc Id: ENSMUST00000179201
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,540,342 - 79,546,562 (+)Ensembl
GRCm38.p6 Ensembl1079,704,508 - 79,710,728 (+)Ensembl
Ensembl Acc Id: ENSMUST00000179781   ⟹   ENSMUSP00000136487
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,540,325 - 79,547,803 (+)Ensembl
GRCm38.p6 Ensembl1079,704,491 - 79,711,969 (+)Ensembl
Ensembl Acc Id: ENSMUST00000180235
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,545,939 - 79,547,544 (+)Ensembl
GRCm38.p6 Ensembl1079,710,105 - 79,711,710 (+)Ensembl
RefSeq Acc Id: NM_001077184   ⟹   NP_001070652
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,540,192 - 79,547,813 (+)NCBI
GRCm381079,704,358 - 79,711,979 (+)ENTREZGENE
MGSCv371079,167,103 - 79,174,724 (+)RGD
Celera1080,718,673 - 80,726,294 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_009768   ⟹   NP_033898
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,540,192 - 79,547,813 (+)NCBI
GRCm381079,704,358 - 79,711,979 (+)ENTREZGENE
MGSCv371079,167,103 - 79,174,724 (+)RGD
Celera1080,718,673 - 80,726,294 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_033898   ⟸   NM_009768
- Peptide Label: isoform 1 precursor
- UniProtKB: Q6LDB0 (UniProtKB/Swiss-Prot),   Q7TSC0 (UniProtKB/Swiss-Prot),   P18572 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001070652   ⟸   NM_001077184
- Peptide Label: isoform 2 precursor
- UniProtKB: O55107 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000137126   ⟸   ENSMUST00000178383
Ensembl Acc Id: ENSMUSP00000101020   ⟸   ENSMUST00000105381
Ensembl Acc Id: ENSMUSP00000136487   ⟸   ENSMUST00000179781
Ensembl Acc Id: ENSMUSP00000070751   ⟸   ENSMUST00000067036
Protein Domains
Ig-like   Ig-like C2-type   Ig-like V-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P18572-F1-model_v2 AlphaFold P18572 1-389 view protein structure

Promoters
RGD ID:6819061
Promoter ID:MM_KWN:4776
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001077184,   NM_009768
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,167,029 - 79,167,529 (+)MPROMDB
RGD ID:6846702
Promoter ID:MM_ACW:5303
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day6
Transcripts:BSG.HSEP07-UNSPLICED,   BSG.KSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,170,091 - 79,170,591 (+)MPROMDB
RGD ID:6846700
Promoter ID:MM_ACW:5304
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung
Transcripts:BSG.BSEP07,   BSG.DSEP07,   BSG.FSEP07,   BSG.ISEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,171,836 - 79,172,692 (+)MPROMDB
RGD ID:6846701
Promoter ID:MM_ACW:5305
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   Spleen
Transcripts:BSG.JSEP07,   BSG.LSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,173,211 - 79,174,187 (+)MPROMDB
RGD ID:8672538
Promoter ID:EPDNEW_M14299
Type:initiation region
Name:Bsg_1
Description:Mus musculus basigin , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381079,704,507 - 79,704,567EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88208 AgrOrtholog
Ensembl Genes ENSMUSG00000023175 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000067036 ENTREZGENE
  ENSMUST00000067036.12 UniProtKB/Swiss-Prot
  ENSMUST00000105381.5 UniProtKB/TrEMBL
  ENSMUST00000178383.8 UniProtKB/TrEMBL
  ENSMUST00000179781 ENTREZGENE
  ENSMUST00000179781.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot
KEGG Report mmu:12215 UniProtKB/Swiss-Prot
MGD MGI:88208 ENTREZGENE
NCBI Gene 12215 ENTREZGENE
PANTHER BASIGIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10075 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ig_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bsg PhenoGen
PRINTS BASIGIN UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc2 UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt BASI_MOUSE UniProtKB/Swiss-Prot
  J3QP71_MOUSE UniProtKB/TrEMBL
  K3W4Q8_MOUSE UniProtKB/TrEMBL
  O55107 ENTREZGENE, UniProtKB/TrEMBL
  O55108_MOUSE UniProtKB/TrEMBL
  P18572 ENTREZGENE
  Q6LDB0 ENTREZGENE
  Q7TSC0 ENTREZGENE
UniProt Secondary Q6LDB0 UniProtKB/Swiss-Prot
  Q7TSC0 UniProtKB/Swiss-Prot