Foxd1 (forkhead box D1) - Rat Genome Database

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Gene: Foxd1 (forkhead box D1) Chinchilla lanigera
Analyze
Symbol: Foxd1
Name: forkhead box D1
RGD ID: 10084596
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA binding, bending (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN axon guidance (ortholog); branching involved in ureteric bud morphogenesis (ortholog); canonical Wnt signaling pathway (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: forkhead box protein D1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542527,158,601 - 27,159,447 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Foxd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542527,158,601 - 27,159,447 (+)NCBIChiLan1.0ChiLan1.0
FOXD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38573,446,266 - 73,448,777 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl573,444,827 - 73,448,777 (-)EnsemblGRCh38hg38GRCh38
GRCh37572,742,093 - 72,744,602 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36572,777,839 - 72,780,108 (-)NCBINCBI36Build 36hg18NCBI36
Build 34572,777,870 - 72,780,356NCBI
Celera568,637,378 - 68,639,649 (-)NCBICelera
Cytogenetic Map5q13.2NCBI
HuRef567,947,569 - 67,949,821 (-)NCBIHuRef
CHM1_1572,174,804 - 72,177,081 (-)NCBICHM1_1
T2T-CHM13v2.0573,927,589 - 73,930,100 (-)NCBIT2T-CHM13v2.0
Foxd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391398,490,753 - 98,493,213 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1398,490,750 - 98,495,813 (+)EnsemblGRCm39 Ensembl
GRCm381398,354,245 - 98,356,705 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1398,354,242 - 98,359,305 (+)EnsemblGRCm38mm10GRCm38
MGSCv371399,124,200 - 99,126,660 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361399,454,412 - 99,456,849 (+)NCBIMGSCv36mm8
Celera13102,010,574 - 102,012,702 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1351.96NCBI
Foxd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8231,436,802 - 31,439,222 (+)NCBIGRCr8
mRatBN7.2229,702,558 - 29,704,978 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl229,702,558 - 29,704,978 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx236,759,829 - 36,762,247 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0234,854,175 - 34,856,593 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0229,672,088 - 29,674,506 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0228,460,068 - 28,462,488 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl228,460,068 - 28,462,488 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0247,560,939 - 47,563,359 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4228,944,067 - 28,945,665 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1228,864,816 - 28,865,119 (+)NCBI
Celera225,739,043 - 25,741,152 (+)NCBICelera
Cytogenetic Map2q12NCBI
FOXD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2441,869,400 - 41,871,933 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1540,021,506 - 40,025,581 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0541,867,118 - 41,870,497 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FOXD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha253,266,967 - 53,269,485 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0256,812,484 - 56,814,991 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1253,873,429 - 53,875,972 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0254,641,541 - 54,644,071 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0255,532,914 - 55,535,465 (-)NCBIUU_Cfam_GSD_1.0
FOXD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl282,607,848 - 82,609,248 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1282,607,113 - 82,612,005 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
FOXD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1467,790,423 - 67,796,901 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604916,561,007 - 16,563,829 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249052,487,981 - 2,490,068 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_013514755   ⟹   XP_013370209
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542527,158,601 - 27,159,447 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013370209 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013370209   ⟸   XM_013514755
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Foxd1 ENTREZGENE