Foxn1<sup>em1Nips</sup> (forkhead box N1; CRISPR/Cas9 system induced mutant 1, National Institute for Physiological Sciences) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Foxn1em1Nips (forkhead box N1; CRISPR/Cas9 system induced mutant 1, National Institute for Physiological Sciences) Rattus norvegicus
Analyze
Symbol: Foxn1em1Nips
Name: forkhead box N1; CRISPR/Cas9 system induced mutant 1, National Institute for Physiological Sciences
RGD ID: 10053596
Description: This allele was made by CRISPR mutagenesis. The resulting mutation is a 44-bp frameshift deletion in exon 1 (del 54-97).
ASSOCIATED WITH Thymus Hyperplasia
Type: allele  of Foxn1  
Previously known as: Foxn1^[em1Nips]; Foxn1em1Nips
Is Marker For: Strains:   WI-Foxn1em1Nips  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Cytogenetic Map10 RGD


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Hypomorphic phenotype of Foxn1 gene-modified rats by CRISPR/Cas9 system. Goto T, etal., Transgenic Res. 2016 Aug;25(4):533-44. doi: 10.1007/s11248-016-9941-9. Epub 2016 Mar 2.
2. Data registered by National Institute for Physiological Sciences, JAPAN Personal communication between Dr. Masumi Hirabayashi and RGD curators

Genomics


Related Rat Strains
The following Strains have been annotated to Foxn1em1Nips
WI-Foxn1em1Nips    


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001100648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information