CHAPERONE MEDIATED AUTOPHAGY PATHWAY (PW:0002401)
Description
Chaperone mediated autophagy (CMA) is a selective autophagy pathway whereby cytosolic proteins bearing a recognition motif are individually recognized and translocated into the lysosomal lumen for degradation. The KFERQ motif s recognized by the Hsc70 chaperone Hspa8, a chaperone/co-chaperone complex targets the substrate to the lysosomal membrane where it interacts with the cytosolic tail of single-span membrane protein Lamp2a. Lamp2a multimerization and formation of a 700kDa complex promotes substrate translocation into the lumen. The KFERQ pentapeptide, present in ~30% of cytosolic proteins, consists of a glutamine residue (Q) in the first or last position, one of the two positively charged residues lysine (K) or arginine (R), one of the two negatively charged residues glutamic acid (D) or aspartic acid (E) and one of four hydrophobic residues phenylalanine (F), isoleucine (I), leucine (L) or valine (V); the fifth residue can be one of the positive or one of the four hydrophobic residues. The presence of charge in the sequence makes it possible to render an otherwise incomplete motif into a complete one via charge-conferring post-translational modifications such as phosphorylation or acetylation. Hspa8 is the constitutively expressed cognate heat shock chaperone. Hspa8 is involved in a broad range of functions - from its well-known role in the uncoating of endocytosed clathrin-coated vesicles, to the various aspects of protein homeostasis (folding, assembly, translocation, maturation, degradation such as CMA but also via ubiquitin-proteasome), to regulation of signaling and other cellular processes. Other chaperones, co-chaperones, factors interact with Hspa8 and assist its functions. In CMA, these may include Hsp90aa1 (Hsp90), Dnajb1 (Hsp40), St13 (Hip), Stip1 (Hop), Bag1. Structurally, Hspa8 is composed of a nucleotide binding domain (ATPase) NBD consisting of lobe I and II further subdivided into two subdomains, and a substrate binding domain SBD with a beta-sandwich that binds the client protein and a helix that acts as a lid over it.
To see the structure of NBD click here ;
to see the SBD structure of a close homolog, click here . Hspa8 binds the substrate in the low-affinity, fast-exchange ATP-bound state. Upon ATP hydrolysis, aided by Hsp40, Hspa8 is in the high-affinity, low-exchange ADP-bound state. Exchange of ADP for ATP and going back into the ATP-bound state, aided by several factors referred to as nucleotide exchange factors (NEF) such as Bag1, facilitates substrate release. The inherent flexibility of Hspa8 allows it to interact with many substrates, span a range of conformations and underlies the breadth of its functions. The Lamp2 gene, via alternative splicing, gives rise to several isoforms with different cytosolic and transmembrane regions; only Lamp2a participates in CMA. Once bound to the substrate, Lamp2a undergoes a monomer to multimer transition. Translocation of the substrate into the lumen of the lysosome requires unfolding, possibly aided by a lysosomal form of Hspa8 whose presence is thought to also be required for translocation. However, the translocation mechanism is poorly understood. Upon substrate translocation, the multimer disassembles for another round of substrate loading. The assembly/disassembly is regulated by multiple factors. Gfap protein binds the translocation complex and stabilizes it. Once the substrate has passed through the complex, Gfap dissociates and binds a phosphorylated Gfap, resident in the lysosomal membrane and associated with Eef1a1, in turn promoting disassembling of the translocation complex. CMA function declines with age and is affected in diseases, generally reduced in neurodegeneration and enhanced in cancer. Impairment of CMA is observed in Parkinson disease (PD) and Alzheimer's (AD). PD associated proteins such as alpha-synuclein (SNCA) or LRRK2 are CMA targets. Pathogenic mutations in these genes affect their processing by CMA. They bind Lamp2a with abnormally high affinity, preventing their translocation into the lumen -
click to link to the diagram page for PD pathway . In addition, they also inhibit the degradation of other CMA substrates. Several cathepsins, a main class of lysosomal proteases, are involved in the degradation of monomeric alpha-synuclein and other genes associated with neurodegenerative diseases.
To see the ontology for GViewer, annotations and download, click here ...(less)
Pathway Diagram:
Genes in Pathway:
G
Bag1
BAG cochaperone 1
ISO
RGD
PMID:25724482
RGD:10755685
NCBI chr 5:56,068,494...56,081,075
Ensembl chr 5:60,864,476...60,878,161
G
Ctsb
cathepsin B
ISO
RGD
PMID:24323530
RGD:10755730
NCBI chr15:37,389,636...37,410,508
Ensembl chr15:41,565,611...41,586,478
G
Ctsd
cathepsin D
ISO
RGD
PMID:25766616 PMID:24323530
RGD:10755729 , RGD:10755730
NCBI chr 1:197,527,467...197,539,343
Ensembl chr 1:206,956,944...206,968,821
G
Ctsl
cathepsin L
ISO
RGD
PMID:24323530
RGD:10755730
NCBI chr17:764,370...770,533
Ensembl chr17:770,093...777,113
G
Dnajb1
DnaJ heat shock protein family (Hsp40) member B1
ISO
RGD
PMID:25724482
RGD:10755685
NCBI chr19:24,522,731...24,526,419
Ensembl chr19:41,427,453...41,431,416
G
Eef1a1
eukaryotic translation elongation factor 1 alpha 1
ISO
RGD
PMID:24281265 PMID:25724482
RGD:10755322 , RGD:10755685
NCBI chr 8:79,341,554...79,344,784
Ensembl chr 8:88,221,843...88,225,072
G
Gfap
glial fibrillary acidic protein
ISO
RGD
PMID:24281265 PMID:25724482
RGD:10755322 , RGD:10755685
NCBI chr10:87,852,891...87,861,631
Ensembl chr10:88,352,986...88,361,685
G
Hsp90aa1
heat shock protein 90 alpha family class A member 1
ISO
RGD
PMID:25724482
RGD:10755685
NCBI chr 6:129,702,376...129,707,907
Ensembl chr 6:135,523,616...135,528,499
G
Hspa8
heat shock protein family A (Hsp70) member 8
ISO
RGD
PMID:24281265 PMID:25724482
RGD:10755322 , RGD:10755685
NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:50,080,199...50,084,372
G
Lamp2
lysosomal-associated membrane protein 2
ISO
RGD
PMID:24281265 PMID:25724482
RGD:10755322 , RGD:10755685
NCBI chr X:122,038,734...122,087,745
Ensembl chr X:121,922,187...122,087,675
G
St13
ST13, Hsp70 interacting protein
ISO
RGD
PMID:25724482
RGD:10755685
NCBI chr 7:112,891,007...112,925,727
Ensembl chr 7:114,769,759...114,805,941
G
Stip1
stress-induced phosphoprotein 1
ISO
RGD
PMID:25724482
RGD:10755685
NCBI chr 1:213,638,641...213,657,654
Ensembl chr 1:213,638,641...213,657,654
Pathway Gene Annotations
Disease Annotations Associated with Genes in the chaperone mediated autophagy pathway
Bag1 acromesomelic dysplasia, Maroteaux type , breast cancer , Breast Neoplasms , cervix carcinoma , COVID-19 , distal arthrogryposis type 1A , endometrial cancer , frontotemporal dementia and/or amyotrophic lateral sclerosis 6 , galactosemia , Huntington's disease , invasive ductal carcinoma , lesion of sciatic nerve , Lymphatic Metastasis , primary ciliary dyskinesia , prostate cancer , Reperfusion Injury Ctsb acute necrotizing pancreatitis , Albuminuria , atherosclerosis , Atrioventricular Septal Defect 4 , brain infarction , brain ischemia , breast cancer , colitis , Contusions , COVID-19 , diabetes mellitus , Disease Progression , esophagus adenocarcinoma , Experimental Arthritis , Experimental Diabetes Mellitus , fascioliasis , glioblastoma , Guillain-Barre syndrome , hepatocellular carcinoma , high grade glioma , Inflammatory Breast Neoplasms , intracranial aneurysm , Keratolytic Winter Erythema , Mercury Poisoning, Nervous System , metabolic dysfunction and alcohol associated liver disease , multiple sclerosis , muscular disease , myocardial infarction , Necrosis , Neoplasm Invasiveness , Neoplasm Metastasis , Neurodevelopmental Disorders , Optic Nerve Injuries , otitis media , polycystic kidney disease , Prostatic Neoplasms , proteinuria , renal cell carcinoma , renal tubular acidosis , Reoviridae Infections , Reperfusion Injury , Skeletal Muscle Injuries , Squalene Synthase Deficiency , steatotic liver disease , thoracic aortic aneurysm , transitional cell carcinoma , type 1 diabetes mellitus , type 2 diabetes mellitus , urinary bladder cancer Ctsd Alzheimer's disease , amyotrophic lateral sclerosis type 1 , atherosclerosis , Beckwith-Wiedemann syndrome , breast cancer , COVID-19 , delta beta-thalassemia , developmental and epileptic encephalopathy , Diabetic Nephropathies , early infantile epileptic encephalopathy , genetic disease , hepatocellular carcinoma , immunodeficiency 39 , kidney disease , Neoplasm Invasiveness , Neoplasm Metastasis , neuronal ceroid lipofuscinosis , neuronal ceroid lipofuscinosis 10 , osteoarthritis , Prostatic Neoplasms , renal cell carcinoma , rheumatoid arthritis , Segawa Syndrome, Autosomal Recessive , Weight Gain Ctsl Albuminuria , atherosclerosis , brain ischemia , colitis , Contusions , Coronavirus infectious disease , COVID-19 , dilated cardiomyopathy , Experimental Autoimmune Myasthenia Gravis , Experimental Diabetes Mellitus , hepatocellular carcinoma , hyperthyroidism , hypertrophic cardiomyopathy , Intervertebral Disc Displacement , meningioma , multiple sclerosis , muscular atrophy , nephrotic syndrome , otitis media , pancreatitis , proteinuria , Recurrence , Reoviridae Infections , severe acute respiratory syndrome , Sprains and Strains , Stomach Neoplasms , type 1 diabetes mellitus , type 2 diabetes mellitus Eef1a1 Animal Mammary Neoplasms , Burns , carcinoma , combined oxidative phosphorylation deficiency 10 , COVID-19 , Experimental Mammary Neoplasms , Knee Osteoarthritis , sialuria , Stomach Neoplasms Gfap Alexander disease , amyotrophic lateral sclerosis , amyotrophic lateral sclerosis type 1 , Animal Disease Models , autism spectrum disorder , brain edema , Closed Head Injuries , COVID-19 , epilepsy , Experimental Liver Cirrhosis , genetic disease , Gliosis , hereditary breast ovarian cancer syndrome , Hyperalgesia , Lewy body dementia , metachromatic leukodystrophy , nervous system disease , neuromyelitis optica , neuronal ceroid lipofuscinosis 1 , Parkinson's disease , Penetrating Head Injuries , peripheral nervous system disease , primary ciliary dyskinesia , primary ciliary dyskinesia 17 , retinal disease , scoliosis , Sepsis-Associated Encephalopathy , SPASTIC PARAPLEGIA, INTELLECTUAL DISABILITY, NYSTAGMUS, AND OBESITY , Spina Bifida Cystica , Spinal Cord Injuries , stress-related disorder , Stroke , trigeminal neuralgia , Urination Disorders , Ventriculomegaly Hsp90aa1 Alzheimer's disease , anaplastic large cell lymphoma , Breast Neoplasms , Charcot-Marie-Tooth disease axonal type 2O , Cognitive Dysfunction , colon cancer , contact dermatitis , Ductal Carcinoma , Experimental Diabetes Mellitus , Frontotemporal Lobar Degeneration , human immunodeficiency virus infectious disease , immunodeficiency 132A , intrahepatic cholangiocarcinoma , Knee Osteoarthritis , Neoplasm Metastasis , Neurodevelopmental Disorders , portal hypertension , rheumatoid arthritis , withdrawal disorder Hspa8 Acute Coronary Syndrome , acute kidney failure , Acute Liver Failure , adenocarcinoma , brain ischemia , cervical cancer , Chemical and Drug Induced Liver Injury , chromosome 11 partial duplication syndrome , colorectal cancer , Diabetic Nephropathies , disease of metabolism , Dwarfism , graft-versus-host disease , Huntington's disease , hypertension , inflammatory bowel disease , Kidney Reperfusion Injury , macular degeneration , Mouth Neoplasms , multiple sclerosis , Ocular Paraneoplastic Syndromes , pancreatic ductal adenocarcinoma , Parkinson's disease , relapsing-remitting multiple sclerosis , renal hypertension , Reperfusion Injury , schizophrenia , spinocerebellar ataxia type 17 , squamous cell carcinoma , Stomach Neoplasms , transient cerebral ischemia Lamp2 Acute Experimental Pancreatitis , autistic disorder , autosomal hemophilia A , cardiomyopathy , cholestasis , chronic conjunctivitis , cognitive disorder , Danon disease , dilated cardiomyopathy , factor VIII deficiency , familial hypertrophic cardiomyopathy , hypertrophic cardiomyopathy , hypertrophic cardiomyopathy 1 , intellectual disability , Isolated Noncompaction of the Ventricular Myocardium , Liver Reperfusion Injury , myocardial infarction , sciatic neuropathy , status epilepticus , syndromic X-linked intellectual disability 14 , syndromic X-linked intellectual disability Cabezas type , syndromic X-linked intellectual disability Lubs type , traumatic brain injury , Trifascicular Block St13 adenylosuccinase lyase deficiency , Rubinstein-Taybi syndrome Stip1 Colorectal Neoplasms , intellectual disability , leukocyte adhesion deficiency 3 , melanoma , multiple endocrine neoplasia type 1
acromesomelic dysplasia, Maroteaux type Bag1 Acute Coronary Syndrome Hspa8 Acute Experimental Pancreatitis Lamp2 acute kidney failure Hspa8 Acute Liver Failure Hspa8 acute necrotizing pancreatitis Ctsb adenocarcinoma Hspa8 adenylosuccinase lyase deficiency St13 Albuminuria Ctsb , Ctsl Alexander disease Gfap Alzheimer's disease Ctsd , Hsp90aa1 amyotrophic lateral sclerosis Gfap amyotrophic lateral sclerosis type 1 Ctsd , Gfap anaplastic large cell lymphoma Hsp90aa1 Animal Disease Models Gfap Animal Mammary Neoplasms Eef1a1 atherosclerosis Ctsb , Ctsd , Ctsl Atrioventricular Septal Defect 4 Ctsb autism spectrum disorder Gfap autistic disorder Lamp2 autosomal hemophilia A Lamp2 Beckwith-Wiedemann syndrome Ctsd brain edema Gfap brain infarction Ctsb brain ischemia Ctsb , Ctsl , Hspa8 breast cancer Bag1 , Ctsb , Ctsd Breast Neoplasms Bag1 , Hsp90aa1 Burns Eef1a1 carcinoma Eef1a1 cardiomyopathy Lamp2 cervical cancer Hspa8 cervix carcinoma Bag1 Charcot-Marie-Tooth disease axonal type 2O Hsp90aa1 Chemical and Drug Induced Liver Injury Hspa8 cholestasis Lamp2 chromosome 11 partial duplication syndrome Hspa8 chronic conjunctivitis Lamp2 Closed Head Injuries Gfap cognitive disorder Lamp2 Cognitive Dysfunction Hsp90aa1 colitis Ctsb , Ctsl colon cancer Hsp90aa1 colorectal cancer Hspa8 Colorectal Neoplasms Stip1 combined oxidative phosphorylation deficiency 10 Eef1a1 contact dermatitis Hsp90aa1 Contusions Ctsb , Ctsl Coronavirus infectious disease Ctsl COVID-19 Bag1 , Ctsb , Ctsd , Ctsl , Eef1a1 , Gfap Danon disease Lamp2 delta beta-thalassemia Ctsd developmental and epileptic encephalopathy Ctsd diabetes mellitus Ctsb Diabetic Nephropathies Ctsd , Hspa8 dilated cardiomyopathy Ctsl , Lamp2 disease of metabolism Hspa8 Disease Progression Ctsb distal arthrogryposis type 1A Bag1 Ductal Carcinoma Hsp90aa1 Dwarfism Hspa8 early infantile epileptic encephalopathy Ctsd endometrial cancer Bag1 epilepsy Gfap esophagus adenocarcinoma Ctsb Experimental Arthritis Ctsb Experimental Autoimmune Myasthenia Gravis Ctsl Experimental Diabetes Mellitus Ctsb , Ctsl , Hsp90aa1 Experimental Liver Cirrhosis Gfap Experimental Mammary Neoplasms Eef1a1 factor VIII deficiency Lamp2 familial hypertrophic cardiomyopathy Lamp2 fascioliasis Ctsb frontotemporal dementia and/or amyotrophic lateral sclerosis 6 Bag1 Frontotemporal Lobar Degeneration Hsp90aa1 galactosemia Bag1 genetic disease Ctsd , Gfap glioblastoma Ctsb Gliosis Gfap graft-versus-host disease Hspa8 Guillain-Barre syndrome Ctsb hepatocellular carcinoma Ctsb , Ctsd , Ctsl hereditary breast ovarian cancer syndrome Gfap high grade glioma Ctsb human immunodeficiency virus infectious disease Hsp90aa1 Huntington's disease Bag1 , Hspa8 Hyperalgesia Gfap hypertension Hspa8 hyperthyroidism Ctsl hypertrophic cardiomyopathy Ctsl , Lamp2 hypertrophic cardiomyopathy 1 Lamp2 immunodeficiency 132A Hsp90aa1 immunodeficiency 39 Ctsd inflammatory bowel disease Hspa8 Inflammatory Breast Neoplasms Ctsb intellectual disability Lamp2 , Stip1 Intervertebral Disc Displacement Ctsl intracranial aneurysm Ctsb intrahepatic cholangiocarcinoma Hsp90aa1 invasive ductal carcinoma Bag1 Isolated Noncompaction of the Ventricular Myocardium Lamp2 Keratolytic Winter Erythema Ctsb kidney disease Ctsd Kidney Reperfusion Injury Hspa8 Knee Osteoarthritis Eef1a1 , Hsp90aa1 lesion of sciatic nerve Bag1 leukocyte adhesion deficiency 3 Stip1 Lewy body dementia Gfap Liver Reperfusion Injury Lamp2 Lymphatic Metastasis Bag1 macular degeneration Hspa8 melanoma Stip1 meningioma Ctsl Mercury Poisoning, Nervous System Ctsb metabolic dysfunction and alcohol associated liver disease Ctsb metachromatic leukodystrophy Gfap Mouth Neoplasms Hspa8 multiple endocrine neoplasia type 1 Stip1 multiple sclerosis Ctsb , Ctsl , Hspa8 muscular atrophy Ctsl muscular disease Ctsb myocardial infarction Ctsb , Lamp2 Necrosis Ctsb Neoplasm Invasiveness Ctsb , Ctsd Neoplasm Metastasis Ctsb , Ctsd , Hsp90aa1 nephrotic syndrome Ctsl nervous system disease Gfap Neurodevelopmental Disorders Ctsb , Hsp90aa1 neuromyelitis optica Gfap neuronal ceroid lipofuscinosis Ctsd neuronal ceroid lipofuscinosis 1 Gfap neuronal ceroid lipofuscinosis 10 Ctsd Ocular Paraneoplastic Syndromes Hspa8 Optic Nerve Injuries Ctsb osteoarthritis Ctsd otitis media Ctsb , Ctsl pancreatic ductal adenocarcinoma Hspa8 pancreatitis Ctsl Parkinson's disease Gfap , Hspa8 Penetrating Head Injuries Gfap peripheral nervous system disease Gfap polycystic kidney disease Ctsb portal hypertension Hsp90aa1 primary ciliary dyskinesia Bag1 , Gfap primary ciliary dyskinesia 17 Gfap prostate cancer Bag1 Prostatic Neoplasms Ctsb , Ctsd proteinuria Ctsb , Ctsl Recurrence Ctsl relapsing-remitting multiple sclerosis Hspa8 renal cell carcinoma Ctsb , Ctsd renal hypertension Hspa8 renal tubular acidosis Ctsb Reoviridae Infections Ctsb , Ctsl Reperfusion Injury Bag1 , Ctsb , Hspa8 retinal disease Gfap rheumatoid arthritis Ctsd , Hsp90aa1 Rubinstein-Taybi syndrome St13 schizophrenia Hspa8 sciatic neuropathy Lamp2 scoliosis Gfap Segawa Syndrome, Autosomal Recessive Ctsd Sepsis-Associated Encephalopathy Gfap severe acute respiratory syndrome Ctsl sialuria Eef1a1 Skeletal Muscle Injuries Ctsb SPASTIC PARAPLEGIA, INTELLECTUAL DISABILITY, NYSTAGMUS, AND OBESITY Gfap Spina Bifida Cystica Gfap Spinal Cord Injuries Gfap spinocerebellar ataxia type 17 Hspa8 Sprains and Strains Ctsl Squalene Synthase Deficiency Ctsb squamous cell carcinoma Hspa8 status epilepticus Lamp2 steatotic liver disease Ctsb Stomach Neoplasms Ctsl , Eef1a1 , Hspa8 stress-related disorder Gfap Stroke Gfap syndromic X-linked intellectual disability 14 Lamp2 syndromic X-linked intellectual disability Cabezas type Lamp2 syndromic X-linked intellectual disability Lubs type Lamp2 thoracic aortic aneurysm Ctsb transient cerebral ischemia Hspa8 transitional cell carcinoma Ctsb traumatic brain injury Lamp2 Trifascicular Block Lamp2 trigeminal neuralgia Gfap type 1 diabetes mellitus Ctsb , Ctsl type 2 diabetes mellitus Ctsb , Ctsl urinary bladder cancer Ctsb Urination Disorders Gfap Ventriculomegaly Gfap Weight Gain Ctsd withdrawal disorder Hsp90aa1