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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:alimentary system trait
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Accession:VT:1000776 term browser browse the term
Definition:Any measurable or observable characteristic of the system dedicated to the mechanical, chemical, and enzymatic processing of food.


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cecum mucosa thickness term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ginf1 Gastrointestinal inflammation QTL 1 IDA RGD PMID:19526527 RGD:2316974 NCBI chr 8:4,705,810...49,705,810 JBrowse link
hepatic copper amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Hcuc1 Hepatic copper content QTL 1 IDA RGD PMID:11741328 RGD:619607
Q Hcuc2 Hepatic copper content QTL 2 IDA RGD PMID:11741328 RGD:619607 NCBI chr16:1...39,533,949 JBrowse link
Q Hcuc3 Hepatic copper content QTL 3 IDA RGD PMID:12094018 RGD:629572 NCBI chr 2:229,059,610...249,053,267 JBrowse link
Q Hcuc4 Hepatic copper content QTL 4 IDA RGD PMID:12094018 RGD:629572 NCBI chr10:66,941,813...73,452,992 JBrowse link
insulin secretion trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Niddm36 Non-insulin dependent diabetes mellitus QTL 36 IDA RGD PMID:11723056 RGD:619688 NCBI chr 1:184,550,676...229,550,676 JBrowse link
Q Niddm62 Non-insulin dependent diabetes mellitus QTL 62 IDA RGD PMID:15266047 RGD:1302801 NCBI chr 2:150,540,301...202,447,032 JBrowse link
intestine integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Colcr1 Colorectal carcinoma resistance QTL 1 IDA RGD PMID:17510081 RGD:1625309 NCBI chr 4:1...29,494,328 JBrowse link
Q Colcr2 Colorectal carcinoma resistance QTL 2 IDA RGD PMID:17510081 RGD:1625309 NCBI chr15:2,266,368...22,711,984 JBrowse link
Q Colcr3 Colorectal carcinoma resistance QTL 3 IDA RGD PMID:17510081 RGD:1625309 NCBI chr18:2,249,477...22,066,430 JBrowse link
Q Colcr4 Colorectal carcinoma resistance QTL4 IDA RGD PMID:17510081 RGD:1625309 NCBI chr 6:20,338,777...62,613,667 JBrowse link
Q Colcr5 Colorectal carcinoma resistance QTL 5 IDA RGD PMID:17510081 RGD:1625309 NCBI chr 6:122,549,046...137,801,795 JBrowse link
Q Colcr6 Colorectal carcinoma resistance QTL 6 IDA RGD PMID:17510081 RGD:1625309 NCBI chr15:73,690,518...99,794,247 JBrowse link
Q Colcr7 Colorectal carcinoma resistance QTL 7 IDA RGD PMID:17510081 RGD:1625309 NCBI chr17:2,115,149...21,881,669 JBrowse link
Q Colcr8 Colorectal carcinoma resistance QTL 8 IDA RGD PMID:17510081 RGD:1625309 NCBI chr18:22,066,242...52,293,055 JBrowse link
Q Colcr9 Colorectal carcinoma resistance QTL 9 IDA RGD PMID:17510081 RGD:1625309 NCBI chr20:1,530,655...46,530,655 JBrowse link
Q Colcs1 Colorectal carcinoma susceptibility QTL 1 IDA RGD PMID:17510081 RGD:1625309 NCBI chr 5:121,846,814...166,846,814 JBrowse link
Q Xhs1 X-ray hypersensitivity QTL 1 IDA RGD PMID:11003700 RGD:69702 NCBI chr 4:82,798,864...152,731,274 JBrowse link
Q Xhs2 X-ray hypersensitivity QTL 2 IDA RGD PMID:11003700 RGD:69702 NCBI chr 1:15,321,100...19,121,980 JBrowse link
Q Xhs3 X-ray hypersensitivity QTL 3 IDA RGD PMID:11381618 RGD:631318 NCBI chr 4:84,728,680...129,854,654 JBrowse link
islet of Langerhans morphology trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pancm1 Pancreatic morphology QTL 1 IDA RGD PMID:9169130 RGD:61083 NCBI chr 1:181,759,564...214,537,555 JBrowse link
liver cholesterol amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Hpcl1 Hepatic cholesterol level QTL 1 IDA RGD PMID:9600105 RGD:629576 NCBI chr10:35,392,267...51,793,994 JBrowse link
Q Hpcl2 Hepatic cholesterol level QTL 2 IDA RGD PMID:18071061 RGD:1643359 NCBI chr10:45,029,650...95,600,334 JBrowse link
liver integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ginf2 Gastrointestinal inflammation QTL 2 IDA RGD PMID:19526527 RGD:2316974 NCBI chr 8:4,705,810...49,705,810 JBrowse link
Q Ginf3 Gastrointestinal inflammation QTL 3 IDA RGD PMID:19526527 RGD:2316974 NCBI chr17:49,920,154...86,533,673 JBrowse link
Q Hcar1 Hepatocarcinoma resistance QTL 1 IDA RGD PMID:10493520 RGD:619598 NCBI chr10:6,154,182...15,990,232 JBrowse link
Q Hcar10 Hepatocarcinoma resistance QTL 10 IDA RGD PMID:12154055 RGD:629566 NCBI chr 8:40,713,066...82,925,667 JBrowse link
Q Hcar11 Hepatocarcinoma resistance QTL 11 IDA RGD PMID:12154055 RGD:629566 NCBI chr 6:82,523,650...110,548,006 JBrowse link
Q Hcar12 Hepatocarcinoma resistance QTL 12 IDA RGD PMID:12154055 RGD:629566 NCBI chr 3:29,463,235...118,376,539 JBrowse link
Q Hcar13 Hepatocarcinoma resistance QTL 13 IDA RGD PMID:15185337 RGD:737884 NCBI chr 4:1...32,584,199 JBrowse link
Q Hcar14 Hepatocarcinoma resistance QTL 14 IDA RGD PMID:15185337 RGD:737884 NCBI chr18:51,464,733...83,218,561 JBrowse link
Q Hcar15 Hepatocarcinoma resistance QTL 15 IDA RGD PMID:15771619 RGD:1358145 NCBI chr 1:153,136,852...260,522,016 JBrowse link
Q Hcar2 Hepatocarcinoma resistance QTL 2 IDA RGD PMID:10493520 RGD:619598 NCBI chr 4:78,878,504...123,878,504 JBrowse link
Q Hcar3 Hepatocarcinoma resistance QTL 3 IDA RGD PMID:10493520 RGD:619598 NCBI chr 8:54,237,644...99,103,503 JBrowse link
Q Hcar4 Hepatocarcinoma resistance QTL 4 IDA RGD PMID:10850431 RGD:619609 NCBI chr 1:193,422,268...214,537,671 JBrowse link
Q Hcar5 Hepatocarcinoma resistance QTL 5 IDA RGD PMID:10850431 RGD:619609 NCBI chr 1:214,537,555...226,660,468 JBrowse link
Q Hcar6 Hepatocarcinoma resistance QTL 6 IDA RGD PMID:10850431 RGD:619609
Q Hcar7 Hepatocarcinoma resistance QTL 7 IDA RGD PMID:10850431 RGD:619609 NCBI chr 4:70,808,386...115,808,386 JBrowse link
Q Hcar8 Hepatocarcinoma resistance QTL 8 IDA RGD PMID:10850431 RGD:619609 NCBI chr 4:123,143,783...168,143,783 JBrowse link
Q Hcar9 Hepatocarcinoma resistance QTL 9 IDA RGD PMID:12154055 RGD:629566 NCBI chr 4:109,866,907...167,139,601 JBrowse link
Q Hcas1 Hepatocarcinoma susceptibility QTL 1 IDA RGD PMID:10493520 RGD:619598 NCBI chr 7:91,412,594...129,807,172 JBrowse link
Q Hcas2 Hepatocarcinoma susceptibility QTL 2 IDA RGD PMID:10493520 RGD:619598 NCBI chr 1:5,925,874...115,540,829 JBrowse link
Q Hcas3 Hepatocarcinoma susceptibility QTL 3 IDA RGD PMID:12154055 RGD:629566 NCBI chr 1:144,267,353...222,987,745 JBrowse link
Q Hcas4 Hepatocarcinoma susceptibility QTL 4 IDA RGD PMID:12154055 RGD:629566 NCBI chr16:4,227,609...46,975,965 JBrowse link
Q Hcas5 Hepatocarcinoma susceptibility QTL 5 IDA RGD PMID:15185337 RGD:737884 NCBI chr 1:176,426,412...257,976,495 JBrowse link
Q Hcas6 Hepatocarcinoma susceptibility QTL 6 IDA RGD PMID:15185337 RGD:737884 NCBI chr14:39,057,237...83,368,335 JBrowse link
Q Hcas7 Hepatocarcinoma susceptibility QTL 7 IDA RGD PMID:15185337 RGD:737884 NCBI chr15:2,266,368...46,921,453 JBrowse link
Q Hcas8 Hepatocarcinoma susceptibility QTL 8 IDA RGD PMID:17079458 RGD:1599590 NCBI chr16:1...22,477,621 JBrowse link
Q Lnnr1 Liver neoplastic nodule remodeling QTL 1 IDA RGD PMID:12672032 RGD:629574 NCBI chr 7:34,293,282...79,293,282 JBrowse link
Q Lnnr2 Liver neoplastic nodule remodeling QTL 2 IDA RGD PMID:12672032 RGD:629574 NCBI chr 1:233,948,574...260,522,016 JBrowse link
Q Lnnr3 Liver neoplastic nodule remodeling QTL 3 IDA RGD PMID:15185337 RGD:737884 NCBI chr 2:1...41,244,106 JBrowse link
Q Lnnr4 Liver neoplastic nodule remodeling QTL 4 IDA RGD PMID:15185337 RGD:737884 NCBI chr13:1...42,356,786 JBrowse link
Q Lnnr5 Liver neoplastic nodule remodeling QTL 5 IDA RGD PMID:15185337 RGD:737884 NCBI chr13:59,874,408...85,581,182 JBrowse link
Q Lnnr6 Liver neoplastic nodule remodeling QTL 6 IDA RGD PMID:15185337 RGD:737884 NCBI chr13:74,862,117...85,581,182 JBrowse link
liver mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Livw1 Liver weight QTL 1 IDA RGD PMID:15728334 RGD:1580752 NCBI chr 1:155,422,851...172,949,803 JBrowse link
Q Livw2 Liver weight QTL 2 IDA RGD PMID:15728334 RGD:1580752 NCBI chr 5:99,016,066...119,085,810 JBrowse link
Q Livw3 Liver weight QTL 3 IDA RGD PMID:19526527 RGD:2316974 NCBI chr 8:4,705,810...49,705,810 JBrowse link
Q Livw4 Liver weight QTL 4 IDA RGD PMID:25296178 RGD:10402111 NCBI chr 7:70,840,118...72,474,897 JBrowse link
pancreas integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Iddm20 Insulin dependent diabetes mellitus QTL 20 IDA RGD PMID:15793267 RGD:1358924 NCBI chr17:13,986,773...21,975,515 JBrowse link
Q Panci1 Pancreas inflammation QTL 1 IDA RGD PMID:11414764 RGD:619682 NCBI chr 7:116,677,189...127,103,496 JBrowse link
pancreas mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pancm3 Pancreatic morphology QTL 3 IDA RGD PMID:20530722 RGD:2326163 NCBI chr20:17,617,832...47,606,836 JBrowse link
Q Pancm4 Pancreatic morphology QTL 4 IDA RGD PMID:17213368 RGD:1626640 NCBI chr 4:26,907,285...75,585,128 JBrowse link
Q Pancm5 Pancreatic morphology QTL 5 IDA RGD PMID:9745032 RGD:69697 NCBI chr14:30,320,092...80,829,842 JBrowse link
pancreatic beta cell morphology trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pancm2 Pancreatic morphology QTL 2 IDA RGD PMID:20878524 RGD:4889455 NCBI chr10:76,748,906...107,211,142 JBrowse link
stomach morphology trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Gcr1 Gastric cancer resistance QTL 1 IDA RGD PMID:10706129 RGD:69698 NCBI chr 4:120,260,281...147,278,687 JBrowse link
Q Gcr2 Gastric cancer resistance QTL 2 IDA RGD PMID:10706129 RGD:69698 NCBI chr 3:8,658,162...27,494,778 JBrowse link
Q Gcr3 Gastric cancer resistance QTL 3 IDA RGD PMID:10706129 RGD:69698 NCBI chr16:17,696,791...82,635,055 JBrowse link
Q Gcs1 Gastric cancer susceptibility QTL1 IDA RGD PMID:10706129 RGD:69698 NCBI chr15:76,306,099...101,769,107 JBrowse link
tongue integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Tcas1 Tongue tumor susceptibility QTL 1 IDA RGD PMID:9563479 RGD:61091 NCBI chr19:2,316,121...47,316,121 JBrowse link
Q Tcas10 Tongue tumor susceptibility QTL 10 IDA RGD PMID:11429048 RGD:634723 NCBI chr10:31,297,439...76,297,439 JBrowse link
Q Tcas11 Tongue tumor susceptibility QTL 11 IDA RGD PMID:16527513 RGD:1578522 NCBI chr 5:46,711,509...161,317,411 JBrowse link
Q Tcas2 Tongue tumor susceptibility QTL 2 IDA RGD PMID:11429048 RGD:634723 NCBI chr 1:192,485,903...199,050,587 JBrowse link
Q Tcas3 Tongue tumor susceptibility QTL 3 IDA RGD PMID:11429048 RGD:634723 NCBI chr 4:10,814,170...91,360,527 JBrowse link
Q Tcas4 Tongue tumor susceptibility QTL 4 IDA RGD PMID:11429048 RGD:634723 NCBI chr14:17,622,561...42,337,007 JBrowse link
Q Tcas5 Tongue tumor susceptibility QTL 5 IDA RGD PMID:11429048 RGD:634723 NCBI chr19:9,977,753...39,654,489 JBrowse link
Q Tcas6 Tongue tumor susceptibility QTL 6 IDA RGD PMID:11429048 RGD:634723 NCBI chr 1:92,948,896...144,267,916 JBrowse link
Q Tcas7 Tongue tumor susceptibility QTL 7 IDA RGD PMID:15876484 RGD:1358147 NCBI chr19:24,817,978...39,654,489 JBrowse link
Q Tcas8 Tongue tumor susceptibility QTL 8 IDA RGD PMID:11429048 RGD:634723
Q Tcas9 Tongue tumor susceptibility QTL 9 IDA RGD PMID:11429048 RGD:634723 NCBI chr 6:1...37,618,905 JBrowse link
Q Tcat1 Tongue tumor resistance QTL 1 IDA RGD PMID:9563479 RGD:61091 NCBI chr 1:99,267,916...144,267,916 JBrowse link

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