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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:coat/hair pigmentation trait
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Accession:VT:0010463 term browser browse the term
Definition:Any measurable or observable characteristic related to the deposition or aggregation of coloring matter in the fine, keratinized filamentous growths arising from the epidermis of mammals.



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coat/hair pigmentation trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein ISO Coat colour, saddle tan vs black-and-tan
Coat colour, agouti
OMIA PMID:8202545 PMID:12692166 PMID:15520882 PMID:15965787 PMID:17630272 More... NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
JBrowse link
G Defb14 defensin beta 14 ISO Coat colour, dominant black OMIA PMID:12692166 PMID:15649147 PMID:17483404 PMID:17947548 PMID:19197024 More... NCBI chr16:70,663,443...70,668,473
Ensembl chr16:70,663,333...70,666,540
JBrowse link
G Mc1r melanocortin 1 receptor ISO Coat colour, melanistic mask OMIA PMID:12692165 PMID:21353269 PMID:29932470 PMID:33672409 PMID:34751460 More... NCBI chr19:51,452,448...51,455,375
Ensembl chr19:51,453,239...51,454,192
JBrowse link
G Pmel premelanosome protein ISO Coat colour, merle OMIA PMID:330141 PMID:340189 PMID:418699 PMID:3099512 PMID:3998446 More... NCBI chr 7:1,138,202...1,148,735
Ensembl chr 7:1,138,586...1,148,746
JBrowse link
G Psmb7 proteasome 20S subunit beta 7 ISO Coat colour, harlequin OMIA PMID:3270445 PMID:3998446 PMID:18513894 PMID:21256207 PMID:31658272 More... NCBI chr 3:22,357,777...22,417,748
Ensembl chr 3:22,354,698...22,417,937
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2888
    organ system trait 1978
      integumentary system trait 38
        integumentary system morphology trait 38
          skin adnexa morphology trait 38
            coat/hair morphology trait 26
              coat/hair pigmentation trait 26
Path 2
Term Annotations click to browse term
  vertebrate trait 2888
    organism subdivision trait 211
      surface structure trait 211
        surface structure morphology trait 211
          integumentary system morphology trait 38
            skin adnexa morphology trait 38
              coat/hair morphology trait 26
                coat/hair pigmentation trait 26
paths to the root