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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:hematopoietic system morphology trait
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Accession:VT:0010250 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color, or pattern of cells found in the blood and/or the blood-forming organs and tissues.
Synonyms:exact_synonym: hemopoietic system trait
 xref: EFO:0004503


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CD8-positive T cell quantity term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Cdexp1 CD45RC expression in CD8 T cells QTL 1 IDA 4.3 RGD PMID:15322174 RGD:1302824
Q Cdexp2 CD45RC expression in CD8 T cells QTL 2 IDA 5.7 RGD PMID:15322174 RGD:1302824 NCBI chr20:3,626,323...10,078,622 JBrowse link
eosinophil quantity term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Leukc1 Leukocyte quantity QTL 1 IDA RGD PMID:16151696 RGD:5135221 NCBI chr19:61,249,161...74,246,245 JBrowse link
Q Leukc2 Leukocyte quantity QTL 2 IDA RGD PMID:16151696 RGD:5135221 NCBI chr 2:120,039,407...151,869,825 JBrowse link
Q Leukc3 Leukocyte quantity QTL 3 IDA RGD PMID:17090969 RGD:5135222 NCBI chr 1:227,535,119...233,480,676 JBrowse link
leukocyte quantity term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Wbc1 White blood cell count QTL 1 IDA 2.75 RGD PMID:14532335 RGD:727992 NCBI chr 5:130,678,987...145,274,255 JBrowse link
Q Wbc2 White blood cell count QTL 2 IDA 3.162 RGD PMID:11721057 RGD:70849 NCBI chr12:11,200,494...52,308,831 JBrowse link
Q Wbc3 White blood cell count QTL 3 IDA 0.01 2.51 RGD PMID:19526527 RGD:2316974 NCBI chr 5:111,236,572...156,236,572 JBrowse link
Q Wbc4 White blood cell count QTL 4 IDA 0.01 RGD PMID:19526527 RGD:2316974
Q Wbc5 White blood cell count QTL 5 IDA 0.005 3.21 RGD PMID:19526527 RGD:2316974 NCBI chr 8:16,994,642...61,994,642 JBrowse link
platelet calcium amount term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Calcic1 Intracellular calcium level QTL 1 IDA 3.6 RGD PMID:15882549 RGD:1547855 NCBI chr12:33,700,432...46,784,661 JBrowse link
thymus integrity trait term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Tls1 T-lymphoma susceptibility QTL 1 IDA 0.001 0.0 RGD PMID:10360666 RGD:619600
Q Tls2 T-lymphoma susceptibility QTL 2 IDA 0.001 0.0 RGD PMID:10360666 RGD:619600 NCBI chr 7:82,111,382...132,099,989 JBrowse link
Q Tls3 T-lymphoma susceptibility QTL 3 IDA 1.0E-4 0.0 RGD PMID:10360666 RGD:619600 NCBI chr10:27,587,226...96,099,902 JBrowse link
thymus mass term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Esta1 Estrogen-induced thymic atrophy QTL 1 IDA RGD PMID:16688534 RGD:1579780 NCBI chr10:21,833,758...61,843,633 JBrowse link
Q Esta2 Estrogen-induced thymic atrophy QTL 2 IDA RGD PMID:16688534 RGD:1579780 NCBI chr 2:192,287,802...229,609,668 JBrowse link
Q Esta3 Estrogen-induced thymic atrophy QTL 3 IDA RGD PMID:16688534 RGD:1579780 NCBI chr 2:139,067,258...192,287,892 JBrowse link
Q Esta4 Estrogen-induced thymic atrophy QTL 4 IDA RGD PMID:18420736 RGD:2292503 NCBI chr 3:67,641,776...167,835,660 JBrowse link
Q Stresp18 Stress response QTL 18 IDA 2.9 RGD PMID:16151695 RGD:1549862 NCBI chr 5:32,751,649...77,751,649 JBrowse link
Q Stresp21 Stress response QTL 21 IDA 3.3 RGD PMID:16151695 RGD:1549862 NCBI chr10:6,877,142...51,877,142 JBrowse link
Q Stresp22 Stress response QTL 22 IDA 2.8 RGD PMID:16151695 RGD:1549862 NCBI chr16:41,992,064...86,992,064 JBrowse link
Q Thym1 Thymus enlargement QTL 1 IDA 0.001 10.17 RGD PMID:10792781 RGD:70859
Q Thym2 Thymus enlargement QTL 2 IDA 3.8 RGD PMID:8672128 RGD:634747 NCBI chr13:48,749,814...87,285,480 JBrowse link
Q Thym3 Thymus enlargement QTL 3 IDA 0.001 7.82 RGD PMID:10792781 RGD:70859
Q Thym4 Thymus enlargement QTL 4 IDA 10.68 RGD PMID:10792781 RGD:70859 NCBI chr 1:207,243,873...252,243,873 JBrowse link
Q Tsu1 Thymus enlargement suppressive QTL 1 IDA 3.84 RGD PMID:9234381 RGD:634729 NCBI chr 3:70,845,569...136,091,483 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2925
    organ system trait 1994
      hemolymphoid system trait 56
        hemolymphoid system morphology trait 45
          hematopoietic system morphology trait 45
            blood cell morphology trait + 21
            bone marrow cell morphology trait + 0
            spleen morphology trait + 0
            thymus morphology trait + 25
paths to the root