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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:long bone morphology trait
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Accession:VT:0003723 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the elongated bones of the extremities, consisting of a tubular shaft (diaphysis) and two extremities (epiphyses).


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femur mineral mass term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q GWAS2762549_H trochanter bone mineral density QTL GWAS2762549 (human) IAGP rs5880932 4.0E-8 Based on the EFO term ID GWAS_CATALOG PMID:36228083 NCBI chr 6:151,571,732...151,571,733 JBrowse link
Q GWAS2762550_H trochanter bone mineral density QTL GWAS2762550 (human) IAGP rs11074227 4.0E-8 Based on the EFO term ID GWAS_CATALOG PMID:36228083 NCBI chr15:93,744,926...93,744,927 JBrowse link
Q GWAS2762551_H trochanter bone mineral density QTL GWAS2762551 (human) IAGP rs16854114 1.0E-8 Based on the EFO term ID GWAS_CATALOG PMID:36228083 NCBI chr 3:169,580,955...169,580,956 JBrowse link
Q GWAS2762552_H trochanter bone mineral density QTL GWAS2762552 (human) IAGP rs147371655 9.0E-9 Based on the EFO term ID GWAS_CATALOG PMID:36228083 NCBI chr 3:169,575,871...169,575,872 JBrowse link
Q GWAS2762553_H trochanter bone mineral density QTL GWAS2762553 (human) IAGP rs17522056 3.0E-8 Based on the EFO term ID GWAS_CATALOG PMID:36228083 NCBI chr 9:71,122,827...71,122,828 JBrowse link
Q GWAS2766795_H trochanter bone mineral density QTL GWAS2766795 (human) IAGP rs422623 2.0E-9 Based on the EFO term ID GWAS_CATALOG PMID:36228083 NCBI chr 3:41,082,021...41,082,022 JBrowse link
Q GWAS2766796_H trochanter bone mineral density QTL GWAS2766796 (human) IAGP rs2024219 2.0E-9 Based on the EFO term ID GWAS_CATALOG PMID:36228083 NCBI chr 3:41,104,864...41,104,865 JBrowse link
Q GWAS2766797_H trochanter bone mineral density QTL GWAS2766797 (human) IAGP rs17522056 2.0E-8 Based on the EFO term ID GWAS_CATALOG PMID:36228083 NCBI chr 9:71,122,827...71,122,828 JBrowse link
Q GWAS2766799_H trochanter bone mineral density QTL GWAS2766799 (human) IAGP rs1239055408 5.0E-8 Based on the EFO term ID GWAS_CATALOG PMID:36228083 NCBI chr17:70,652,874...70,652,875 JBrowse link
Q GWAS2766804_H trochanter bone mineral density QTL GWAS2766804 (human) IAGP rs422623 3.0E-9 Based on the EFO term ID GWAS_CATALOG PMID:36228083 NCBI chr 3:41,082,021...41,082,022 JBrowse link
Q GWAS2766805_H trochanter bone mineral density QTL GWAS2766805 (human) IAGP rs8180318 4.0E-8 Based on the EFO term ID GWAS_CATALOG PMID:36228083 NCBI chr 4:87,870,614...87,870,615 JBrowse link
Q GWAS2766806_H trochanter bone mineral density QTL GWAS2766806 (human) IAGP rs423937 4.0E-9 Based on the EFO term ID GWAS_CATALOG PMID:36228083 NCBI chr 3:41,098,922...41,098,923 JBrowse link
Q GWAS2766807_H trochanter bone mineral density QTL GWAS2766807 (human) IAGP rs1463093 6.0E-9 Based on the EFO term ID GWAS_CATALOG PMID:36228083 NCBI chr 4:87,871,368...87,871,369 JBrowse link
femur morphology trait term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q GWAS2360465_H femoral neck bone geometry QTL GWAS2360465 (human) IAGP rs261179 2.0E-8 Based on the EFO term ID GWAS_CATALOG PMID:30888730 NCBI chr 5:4,327,740...4,327,741 JBrowse link
Q GWAS2360466_H femoral neck bone geometry QTL GWAS2360466 (human) IAGP rs8129030 2.0E-6 Based on the EFO term ID GWAS_CATALOG PMID:30888730 NCBI chr21:35,340,290...35,340,291 JBrowse link
Q GWAS2360467_H femoral neck bone geometry QTL GWAS2360467 (human) IAGP rs6556301 2.0E-8 Based on the EFO term ID GWAS_CATALOG PMID:30888730 NCBI chr 5:177,100,576...177,100,577 JBrowse link
Q GWAS2360468_H femoral neck bone geometry QTL GWAS2360468 (human) IAGP rs11049605 5.0E-12 Based on the EFO term ID GWAS_CATALOG PMID:30888730 NCBI chr12:28,443,132...28,443,133 JBrowse link
Q GWAS2360469_H femoral neck bone geometry QTL GWAS2360469 (human) IAGP rs7102273 4.0E-11 Based on the EFO term ID GWAS_CATALOG PMID:30888730 NCBI chr11:68,618,111...68,618,112 JBrowse link
Q GWAS2715070_H alpha angle measurement QTL GWAS2715070 (human) IAGP rs1048584 8.0E-9 Based on the EFO term ID GWAS_CATALOG PMID:36662418 NCBI chr 6:155,257,465...155,257,466 JBrowse link
Q GWAS2715071_H alpha angle measurement QTL GWAS2715071 (human) IAGP rs62578126 9.0E-9 Based on the EFO term ID GWAS_CATALOG PMID:36662418 NCBI chr 9:126,613,059...126,613,060 JBrowse link
Q GWAS2715073_H alpha angle measurement QTL GWAS2715073 (human) IAGP rs10787959 1.0E-8 Based on the EFO term ID GWAS_CATALOG PMID:36662418 NCBI chr10:119,371,801...119,371,802 JBrowse link
Q GWAS2715074_H alpha angle measurement QTL GWAS2715074 (human) IAGP rs561578905 3.0E-8 Based on the EFO term ID GWAS_CATALOG PMID:36662418 NCBI chr12:24,053,184...24,053,185 JBrowse link
Q GWAS2715075_H alpha angle measurement QTL GWAS2715075 (human) IAGP rs146939415 2.0E-8 Based on the EFO term ID GWAS_CATALOG PMID:36662418 NCBI chr15:51,230,013...51,230,014 JBrowse link
Q GWAS2715076_H alpha angle measurement QTL GWAS2715076 (human) IAGP rs4911180 1.0E-11 Based on the EFO term ID GWAS_CATALOG PMID:36662418 NCBI chr20:35,385,145...35,385,146 JBrowse link
Q GWAS2715077_H alpha angle measurement QTL GWAS2715077 (human) IAGP rs7571789 8.0E-9 Based on the EFO term ID GWAS_CATALOG PMID:36662418 NCBI chr 2:70,487,661...70,487,662 JBrowse link
Q GWAS2715078_H alpha angle measurement QTL GWAS2715078 (human) IAGP rs10478422 1.0E-9 Based on the EFO term ID GWAS_CATALOG PMID:36662418 NCBI chr 5:119,411,746...119,411,747 JBrowse link
Q GWAS671395_H femoral neck bone geometry QTL GWAS671395 (human) IAGP rs681900 3.0E-6 Based on the EFO term ID GWAS_CATALOG PMID:22087292 NCBI chr 2:74,847,840...74,847,841 JBrowse link
Q GWAS671396_H femoral neck bone geometry QTL GWAS671396 (human) IAGP rs11859916 2.0E-6 Based on the EFO term ID GWAS_CATALOG PMID:22087292 NCBI chr16:20,339,909...20,339,910 JBrowse link
femur size trait term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q GWAS2399220_H intertrochanteric region size QTL GWAS2399220 (human) IAGP rs143384 1.0E-9 Based on the EFO term ID GWAS_CATALOG PMID:31053729 NCBI chr20:35,437,976...35,437,977 JBrowse link
Q GWAS2399221_H intertrochanteric region size QTL GWAS2399221 (human) IAGP rs72834687 5.0E-9 Based on the EFO term ID GWAS_CATALOG PMID:31053729 NCBI chr17:61,471,400...61,471,401 JBrowse link
Q GWAS2399222_H intertrochanteric region size QTL GWAS2399222 (human) IAGP rs1507462 2.0E-7 Based on the EFO term ID GWAS_CATALOG PMID:31053729 NCBI chr18:75,979,535...75,979,536 JBrowse link
Q GWAS2402745_H intertrochanteric region size QTL GWAS2402745 (human) IAGP rs12601029 6.0E-18 Based on the EFO term ID GWAS_CATALOG PMID:31053729 NCBI chr17:72,007,174...72,007,175 JBrowse link
Q GWAS2402746_H intertrochanteric region size QTL GWAS2402746 (human) IAGP rs1159421 5.0E-15 Based on the EFO term ID GWAS_CATALOG PMID:31053729 NCBI chr17:71,962,201...71,962,202 JBrowse link
Q GWAS2402747_H intertrochanteric region size QTL GWAS2402747 (human) IAGP rs3753841 7.0E-13 Based on the EFO term ID GWAS_CATALOG PMID:31053729 NCBI chr 1:102,914,362...102,914,363 JBrowse link
Q GWAS2402748_H intertrochanteric region size QTL GWAS2402748 (human) IAGP rs9830173 3.0E-11 Based on the EFO term ID GWAS_CATALOG PMID:31053729 NCBI chr 3:56,191,301...56,191,302 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 386187
    organism subdivision trait 10597
      surface structure trait 8065
        surface structure morphology trait 8065
          appendage morphology trait 235
            limb morphology trait 235
              long bone morphology trait 35
                epiphyseal plate morphology trait + 0
                forelimb long bone morphology trait + 0
                hindlimb long bone morphology trait + 35
                long bone diaphysis morphology trait + 0
                long bone epiphysis morphology trait + 0
                long bone metaphysis morphology trait 0
                phalanx morphology trait + 0
Path 2
Term Annotations click to browse term
  vertebrate trait 386187
    organ system trait 176416
      connective tissue trait 15891
        connective tissue morphology trait 15670
          bone morphology trait 6135
            appendicular skeleton morphology trait 412
              skeleton extremities morphology trait 35
                long bone morphology trait 35
                  epiphyseal plate morphology trait + 0
                  forelimb long bone morphology trait + 0
                  hindlimb long bone morphology trait + 35
                  long bone diaphysis morphology trait + 0
                  long bone epiphysis morphology trait + 0
                  long bone metaphysis morphology trait 0
                  phalanx morphology trait + 0
paths to the root