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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:long bone morphology trait
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Accession:VT:0003723 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the elongated bones of the extremities, consisting of a tubular shaft (diaphysis) and two extremities (epiphyses).


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femur mineral mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd1 Bone mineral density QTL 1 IDA RGD PMID:16180139 RGD:1553896 NCBI chr 1:101,228,864...146,228,864 JBrowse link
Q Bmd10 Bone mineral density QTL 10 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 2:175,931,416...220,931,416 JBrowse link
Q Bmd11 Bone mineral density QTL 11 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:92,406,430...137,406,430 JBrowse link
Q Bmd12 Bone mineral density QTL 12 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:137,430,611...182,430,611 JBrowse link
Q Bmd13 Bone mineral density QTL 13 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 5:69,474,415...114,474,415 JBrowse link
Q Bmd14 Bone mineral density QTL 14 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 6:33,328,841...78,328,841 JBrowse link
Q Bmd15 Bone mineral density QTL 15 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 7:10,517,086...62,346,019 JBrowse link
Q Bmd16 Bone mineral density QTL 16 IDA RGD PMID:16461031 RGD:1578307 NCBI chr10:97,202,388...107,556,066 JBrowse link
Q Bmd17 Bone mineral density QTL 17 IDA RGD PMID:16461031 RGD:1578307 NCBI chr15:25,285,835...104,695,021 JBrowse link
Q Bmd18 Bone mineral density QTL 18 IDA RGD PMID:16461031 RGD:1578307 NCBI chr15:25,285,835...104,695,021 JBrowse link
Q Bmd19 Bone mineral density QTL 19 IDA RGD PMID:18282130 RGD:2293456
Q Bmd20 Bone mineral density QTL 20 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 6:1...25,740,059 JBrowse link
Q Bmd21 Bone mineral density QTL 21 IDA RGD PMID:18282130 RGD:2293456
Q Bmd22 Bone mineral density QTL 22 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:27,443,787...72,443,787 JBrowse link
Q Bmd23 Bone mineral density QTL 23 IDA RGD PMID:18282130 RGD:2293456
Q Bmd24 Bone mineral density QTL 24 IDA RGD PMID:18282130 RGD:2293456
Q Bmd25 Bone mineral density QTL 25 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:27,443,787...72,443,787 JBrowse link
Q Bmd26 Bone mineral density QTL 26 IDA RGD PMID:18282130 RGD:2293456 NCBI chr12:1...38,635,130 JBrowse link
Q Bmd27 Bone mineral density QTL 27 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 1:210,980,612...255,980,612 JBrowse link
Q Bmd28 Bone mineral density QTL 28 IDA RGD PMID:18282130 RGD:2293456 NCBI chr17:4,360,057...27,233,623 JBrowse link
Q Bmd3 Bone mineral density QTL 3 IDA RGD PMID:16180139 RGD:1553896 NCBI chr 8:49,849,908...118,871,671 JBrowse link
Q Bmd30 Bone mineral density QTL 30 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:27,443,787...72,443,787 JBrowse link
Q Bmd40 Bone mineral density QTL 40 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:210,980,612...255,980,612 JBrowse link
Q Bmd41 Bone mineral density QTL 41 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:181,059,071...226,059,071 JBrowse link
Q Bmd43 Bone mineral density QTL 43 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:181,059,071...226,059,071 JBrowse link
Q Bmd46 Bone mineral density QTL 46 IDA RGD PMID:18707222 RGD:2300109
Q Bmd47 Bone mineral density QTL 47 IDA RGD PMID:18707222 RGD:2300109
Q Bmd48 Bone mineral density QTL 48 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:182,024,327...227,024,327 JBrowse link
Q Bmd50 Bone mineral density QTL 50 IDA RGD PMID:18707222 RGD:2300109
Q Bmd51 Bone mineral density QTL 51 IDA RGD PMID:18707222 RGD:2300109
Q Bmd52 Bone mineral density QTL 52 IDA RGD PMID:18707222 RGD:2300109
Q Bmd54 Bone mineral density QTL 54 IDA RGD PMID:18707222 RGD:2300109
Q Bmd55 Bone mineral density QTL 55 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 8:85,348,065...130,348,065 JBrowse link
Q Bmd56 Bone mineral density QTL 56 IDA RGD PMID:18707222 RGD:2300109
Q Bmd57 Bone mineral density QTL 57 IDA RGD PMID:18707222 RGD:2300109
Q Bmd6 Bone mineral density QTL 6 IDA RGD PMID:16461031 RGD:1578307
Q Bmd60 Bone mineral density QTL 60 IDA RGD PMID:18707222 RGD:2300109
Q Bmd61 Bone mineral density QTL 61 IDA RGD PMID:18707222 RGD:2300109
Q Bmd63 Bone mineral density QTL 63 IDA RGD PMID:18707222 RGD:2300109
Q Bmd65 Bone mineral density QTL 65 IDA RGD PMID:18707222 RGD:2300109
Q Bmd67 Bone mineral density QTL 67 IDA RGD PMID:18707222 RGD:2300109 NCBI chr18:1...34,566,578 JBrowse link
Q Bmd68 Bone mineral density QTL 68 IDA RGD PMID:18707222 RGD:2300109 NCBI chr20:26,689,362...56,021,148 JBrowse link
Q Bmd7 Bone mineral density QTL 7 IDA RGD PMID:16461031 RGD:1578307
Q Bmd8 Bone mineral density QTL 8 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:51,940,904...101,229,020 JBrowse link
Q Bmd88 Bone mineral density QTL 88 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 9:31,250,432...65,651,574 JBrowse link
Q Bmd9 Bone mineral QTL density 9 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 2:5,736,325...50,736,325 JBrowse link
femur morphology trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss10 Bone structure and strength QTL 10 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:51,940,904...168,768,703 JBrowse link
Q Bss11 Bone structure and strength QTL 11 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 2:169,358,774...214,358,774 JBrowse link
Q Bss111 Bone structure and strength QTL 111 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 2:214,404,877...251,712,708 JBrowse link
Q Bss112 Bone structure and strength QTL 112 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 5:112,142,946...157,142,946 JBrowse link
Q Bss113 Bone structure and strength QTL 113 IDA RGD PMID:26297441 RGD:11528619
Q Bss115 Bone structure and strength QTL 115 IDA RGD PMID:26297441 RGD:11528619
Q Bss116 Bone structure and strength QTL 116 IDA RGD PMID:26297441 RGD:11528619
Q Bss12 Bone structure and strength QTL 12 IDA RGD PMID:16461031 RGD:1578307
Q Bss120 Bone structure and strength QTL 120 IDA RGD PMID:26297441 RGD:11528619
Q Bss121 Bone structure and strength QTL 121 IDA RGD PMID:26297441 RGD:11528619
Q Bss14 Bone structure and strength QTL 14 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:88,883,695...133,883,695 JBrowse link
Q Bss16 Bone structure and strength QTL 16 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 6:33,328,841...78,328,841 JBrowse link
Q Bss17 Bone structure and strength QTL 17 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 9:3,605,355...21,031,556 JBrowse link
Q Bss19 Bone structure and strength QTL 19 IDA RGD PMID:16461031 RGD:1578307 NCBI chr15:25,285,835...104,695,021 JBrowse link
Q Bss20 Bone structure and strength QTL 20 IDA RGD PMID:16461031 RGD:1578307 NCBI chr18:12,066,482...85,493,247 JBrowse link
Q Bss21 Bone structure and strength QTL 21 IDA RGD PMID:16461031 RGD:1578307 NCBI chr18:12,066,482...85,493,247 JBrowse link
Q Bss22 Bone structure and strength QTL 22 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 1:181,059,071...226,059,071 JBrowse link
Q Bss23 Bone structure and strength QTL 23 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 6:3,239,989...48,239,989 JBrowse link
Q Bss24 Bone structure and strength QTL 24 IDA RGD PMID:18158281 RGD:2293455
Q Bss25 Bone structure and strength QTL 25 IDA RGD PMID:18158281 RGD:2293455
Q Bss26 Bone structure and strength QTL 26 IDA RGD PMID:18158281 RGD:2293455 NCBI chr13:67,635,937...109,350,286 JBrowse link
Q Bss27 Bone structure and strength QTL 27 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 1:181,059,071...226,059,071 JBrowse link
Q Bss28 Bone structure and strength QTL 28 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 6:3,239,989...48,239,989 JBrowse link
Q Bss29 Bone structure and strength QTL 29 IDA RGD PMID:18158281 RGD:2293455
Q Bss3 Bone structure and strength QTL 3 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 4:111,383,604...156,383,604 JBrowse link
Q Bss9 Bone structure and strength QTL 9 IDA RGD PMID:16461031 RGD:1578307
femur size trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd29 Bone mineral density QTL 29 IDA RGD PMID:18282130 RGD:2293456
Q Bmd31 Bone mineral density QTL 31 IDA RGD PMID:18282130 RGD:2293456 NCBI chr17:4,360,057...27,233,623 JBrowse link
Q Bmd38 Bone mineral density QTL 38 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 5:13,731,153...43,590,997 JBrowse link
Q Bmd90 Bone mineral density QTL 90 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:49,943,710...94,943,710 JBrowse link
Q Bmd91 Bone mineral density QTL 91 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 9:1...31,250,552 JBrowse link
femur width term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss15 Bone structure and strength QTL 15 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:88,883,695...133,883,695 JBrowse link
Q Bss18 Bone structure and strength QTL 18 IDA RGD PMID:16461031 RGD:1578307 NCBI chr10:97,202,388...107,556,066 JBrowse link
long bone metaphysis morphology trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss59 Bone structure and strength QTL 59 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 5:8,627,230...53,627,230 JBrowse link
Q Bss65 Bone structure and strength QTL 65 IDA RGD PMID:19113924 RGD:2312767 NCBI chr15:67,399,137...108,192,169 JBrowse link
Q Bss71 Bone structure and strength QTL 71 IDA RGD PMID:19113924 RGD:2312767
Q Bss85 Bone structure and strength QTL 85 IDA RGD PMID:19113924 RGD:2312767 NCBI chr18:15,226,101...42,690,662 JBrowse link
tibia area term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss100 Bone structure and strength QTL 100 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 8:58,991,697...91,341,052 JBrowse link
Q Bss104 Bone structure and strength QTL 104 IDA RGD PMID:21818327 RGD:5684953
Q Bss54 Bone structure and strength QTL 54 IDA RGD PMID:19113924 RGD:2312767
Q Bss61 Bone structure and strength QTL 61 IDA RGD PMID:19113924 RGD:2312767 NCBI chr10:5,893,811...50,893,811 JBrowse link
Q Bss67 Bone structure and strength QTL 67 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:46,302,615...91,302,615 JBrowse link
Q Bss72 Bone structure and strength QTL 72 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 3:47,904,172...70,710,963 JBrowse link
Q Bss86 Bone structure and strength QTL 86 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 1:46,302,615...91,302,615 JBrowse link
Q Bss87 Bone structure and strength QTL 87 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 1:46,302,615...91,302,615 JBrowse link
Q Bss90 Bone structure and strength QTL 90 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 9:54,506,504...99,506,504 JBrowse link
Q Bss91 Bone structure and strength QTL 91 IDA RGD PMID:20699128 RGD:4889918 NCBI chr10:83,061,236...92,869,129 JBrowse link
Q Bss92 Bone structure and strength QTL 92 IDA RGD PMID:20699128 RGD:4889918 NCBI chr14:86,271,332...100,078,267 JBrowse link
Q Bss94 Bone structure and strength QTL 94 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 1:51,909,206...91,302,615 JBrowse link
Q Bss95 Bone structure and strength QTL 95 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 3:37,796,919...82,796,919 JBrowse link
Q Bss99 Bone structure and strength QTL 99 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 6:53,684,921...98,684,921 JBrowse link
tibia length term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss51 Bone structure and strength QTL 51 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:5,293,229...34,184,556 JBrowse link
Q Bss53 Bone structure and strength QTL 53 IDA RGD PMID:19113924 RGD:2312767
Q Bss60 Bone structure and strength QTL 60 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 8:58,991,697...91,341,052 JBrowse link
Q Bss66 Bone structure and strength QTL 66 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:46,302,615...91,302,615 JBrowse link
Q Lmblg1 Limb length QTL 1 IDA RGD PMID:15452030 RGD:1302893 NCBI chr 1:160,573,753...210,707,719 JBrowse link
Q Lmblg2 Limb length QTL 2 IDA RGD PMID:15452030 RGD:1302893
Q Plsm3 Polydactyly-luxate syndrome (PLS) morphotypes QTL 3 IDA RGD PMID:8997636 RGD:632346 NCBI chr 7:1...34,650,782 JBrowse link
tibia mineral mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd69 Bone mineral density QTL 69 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:5,293,229...34,184,556 JBrowse link
Q Bmd70 Bone mineral density QTL 70 IDA RGD PMID:19113924 RGD:2312767
Q Bmd71 Bone mineral density QTL 71 IDA RGD PMID:19113924 RGD:2312767 NCBI chr10:5,893,811...50,893,811 JBrowse link
Q Bmd72 Bone mineral density QTL 72 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:46,302,615...91,302,615 JBrowse link
Q Bmd73 Bone mineral density QTL 73 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:46,302,615...91,302,615 JBrowse link
Q Bmd74 Bone mineral density QTL 74 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:91,302,413...136,302,413 JBrowse link
Q Bmd75 Bone mineral density QTL 75 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 2:218,051,934...251,712,708 JBrowse link
Q Bmd76 Bone mineral density QTL 76 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 3:47,904,172...70,710,963 JBrowse link
Q Bmd77 Bone mineral density QTL 77 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 3:47,904,172...70,710,963 JBrowse link
Q Bmd78 Bone mineral density QTL 78 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 5:149,661,912...166,600,247 JBrowse link
Q Bmd79 Bone mineral density QTL 79 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 7:96,700,404...118,618,702 JBrowse link
Q Bmd80 Bone mineral density QTL 80 IDA RGD PMID:19113924 RGD:2312767 NCBI chr10:20,110,614...65,110,614 JBrowse link
Q Bmd81 Bone mineral density QTL 81 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 3:59,119,402...70,710,963 JBrowse link
Q Bmd82 Bone mineral density QTL 82 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 2:61,051,541...105,724,065 JBrowse link
Q Bmd83 Bone mineral density QTL 82 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 6:53,684,921...98,684,921 JBrowse link
Q Bmd84 Bone mineral density QTL 84 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 8:51,589,699...58,991,895 JBrowse link
Q Bmd85 Bone mineral density QTL 85 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 2:61,051,541...105,724,065 JBrowse link
Q Bmd86 Bone mineral density QTL 86 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 4:57,613,242...102,613,242 JBrowse link
Q Bmd87 Bone mineral density QTL 87 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 4:35,113,290...80,113,290 JBrowse link
Q Bmd92 Bone mineral density QTL 92 IDA RGD PMID:27113531 RGD:11353859
tibia size trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss55 Bone structure and strength QTL 55 IDA RGD PMID:19113924 RGD:2312767
Q Bss56 Bone structure and strength QTL 56 IDA RGD PMID:19113924 RGD:2312767
Q Bss62 Bone structure and strength QTL 62 IDA RGD PMID:19113924 RGD:2312767 NCBI chr10:5,893,811...50,893,811 JBrowse link
Q Bss68 Bone structure and strength QTL 68 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:46,302,615...91,302,615 JBrowse link
Q Bss73 Bone structure and strength QTL 73 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 3:47,904,172...70,710,963 JBrowse link
Q Bss76 Bone structure and strength QTL 76 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 8:39,106,258...91,341,052 JBrowse link
Q Bss77 Bone structure and strength QTL 77 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 8:39,106,258...91,341,052 JBrowse link
Q Bss79 Bone structure and strength QTL 79 IDA RGD PMID:19113924 RGD:2312767 NCBI chr10:62,556,066...107,556,066 JBrowse link
Q Bss82 Bone structure and strength QTL 82 IDA RGD PMID:19113924 RGD:2312767 NCBI chr14:38,023,710...83,023,710 JBrowse link
Q Bss83 Bone structure and strength QTL 83 IDA RGD PMID:19113924 RGD:2312767 NCBI chr14:38,023,710...83,023,710 JBrowse link
Q Bss88 Bone structure and strength QTL 88 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 6:53,684,921...98,684,921 JBrowse link
Q Bss89 Bone structure and strength QTL 89 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 8:58,991,697...91,341,052 JBrowse link
Q Bss93 Bone structure and strength QTL 93 IDA RGD PMID:20699128 RGD:4889918 NCBI chr17:27,233,445...65,155,015 JBrowse link
Q Bss96 Bone structure and strength QTL 96 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 4:57,613,242...102,613,242 JBrowse link
Q Bss97 Bone structure and strength QTL 97 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 4:57,613,242...102,613,242 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2911
    organism subdivision trait 211
      surface structure trait 211
        surface structure morphology trait 211
          appendage morphology trait 156
            limb morphology trait 156
              long bone morphology trait 153
                epiphyseal plate morphology trait + 0
                forelimb long bone morphology trait + 0
                hindlimb long bone morphology trait + 149
                long bone diaphysis morphology trait + 0
                long bone epiphysis morphology trait + 0
                long bone metaphysis morphology trait 6
                phalanx morphology trait + 0
Path 2
Term Annotations click to browse term
  vertebrate trait 2911
    organ system trait 1991
      connective tissue trait 440
        connective tissue morphology trait 380
          bone morphology trait 177
            appendicular skeleton morphology trait 153
              skeleton extremities morphology trait 153
                long bone morphology trait 153
                  epiphyseal plate morphology trait + 0
                  forelimb long bone morphology trait + 0
                  hindlimb long bone morphology trait + 149
                  long bone diaphysis morphology trait + 0
                  long bone epiphysis morphology trait + 0
                  long bone metaphysis morphology trait 6
                  phalanx morphology trait + 0
paths to the root