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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:nervous system morphology trait
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Accession:VT:0003632 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color, or pattern of the components of the system responsible for receiving and processing information about an organism's environment and controlling behavior.
Synonyms:narrow_synonym: central nervous system morphology trait;   peripheral nervous system morphology trait
 xref: MP:0003632



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brain integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Toxo1 Toxoplasma gondii resistance QTL 1 IDA RGD PMID:16407112 RGD:1578521 NCBI chr10:52,200,030...59,378,278 JBrowse link
Q Vie1 Viral induced encephalitis QTL 1 IDA RGD PMID:22761571 RGD:7240516 NCBI chr 4:34,430,484...82,490,359 JBrowse link
Q Vie2 Viral induced encephalitis QTL 2 IDA RGD PMID:22761571 RGD:7240516 NCBI chr 3:145,956,084...169,034,231 JBrowse link
Q Vie3 Viral induced encephalitis QTL 3 IDA RGD PMID:22761571 RGD:7240516 NCBI chr 6:96,833,997...140,994,061 JBrowse link
Q Vie4 Viral induced encephalitis QTL 4 IDA RGD PMID:22761571 RGD:7240516 NCBI chr 4:62,933,508...82,490,359 JBrowse link
Q Vie5 Viral induced encephalitis QTL 5 IDA RGD PMID:22761571 RGD:7240516 NCBI chr 4:34,430,484...82,490,359 JBrowse link
brain ventricle morphology trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bvd1 Brain ventricular dilatation QTL 1 IDA RGD PMID:15473982 RGD:1302890 NCBI chr 9:75,712,843...111,552,878 JBrowse link
Q Bvd2 Brain ventricular dilatation QTL 2 IDA RGD PMID:15473982 RGD:1302890 NCBI chr10:93,223,816...107,057,807 JBrowse link
Q Bvd3 Brain ventricular dilatation QTL 3 IDA RGD PMID:15473982 RGD:1302890 NCBI chr11:69,446,070...82,846,715 JBrowse link
Q Bvd4 Brain ventricular dilatation QTL 4 IDA RGD PMID:15473982 RGD:1302890 NCBI chr17:53,498,828...82,479,847 JBrowse link
Q Bvd5 Brain ventricular dilatation QTL 5 IDA RGD PMID:15473982 RGD:1302890 NCBI chr17:31,990,784...81,292,925 JBrowse link
Q Bvd6 Brain ventricular dilatation QTL 6 IDA RGD PMID:11178739 RGD:68693 NCBI chr11:66,113,321...82,169,223 JBrowse link
cerebrum integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bp49 Blood pressure QTL 49 IDA RGD PMID:9241273 RGD:61056 NCBI chr 5:60,293,434...98,603,051 JBrowse link
Q Strs1 Sensitivity to stroke QTL 1 IDA RGD PMID:8696337 RGD:61093 NCBI chr 1:121,767,634...166,767,634 JBrowse link
Q Strs2 Sensitivity to stroke QTL 2 IDA RGD PMID:8696337 RGD:61093 NCBI chr 5:135,929,696...166,875,058 JBrowse link
Q Strs3 Sensitivity to stroke QTL 3 IDA RGD PMID:8696337 RGD:61093 NCBI chr 4:40,433,388...85,433,388 JBrowse link
Q Strs4 Sensitivity to stroke QTL 4 IDA RGD PMID:23690346 RGD:7411685 NCBI chr 1:78,430,536...123,430,536 JBrowse link
Q Strs5 Sensitivity to stroke QTL 5 IDA RGD PMID:23690346 RGD:7411685 NCBI chr18:49,999,958...65,845,095 JBrowse link
Q Strs6 Sensitivity to stroke QTL 6 IDA RGD PMID:23690346 RGD:7411685 NCBI chr 5:134,972,980...138,113,556 JBrowse link
Q Strs7 Sensitivity to stroke QTL 7 IDA RGD PMID:23690346 RGD:7411685 NCBI chr15:40,289,901...49,308,583 JBrowse link
nervous system integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Eae1 Experimental allergic encephalomyelitis QTL 1 IDA RGD PMID:10640775 RGD:61031 NCBI chr20:4,606,607...6,691,706 JBrowse link
Q Eae10 Experimental allergic encephalomyelitis QTL 10 IDA RGD PMID:10640775 RGD:61031 NCBI chr14:17,622,685...18,274,498 JBrowse link
Q Eae11 Experimental allergic encephalomyelitis QTL 11 IDA RGD PMID:10640775 RGD:61031 NCBI chr 4:1...39,505,420 JBrowse link
Q Eae12 Experimental allergic encephalomyelitis QTL 12 IDA RGD PMID:10545597 RGD:69695 NCBI chr10:92,238,497...101,012,337 JBrowse link
Q Eae13 Experimental allergic encephalomyelitis QTL 13 IDA RGD PMID:10545597 RGD:69695 NCBI chr12:24,139,202...36,638,073 JBrowse link
Q Eae14 Experimental allergic encephalomyelitis QTL 14 IDA RGD PMID:10545597 RGD:69695 NCBI chr13:23,203,448...68,203,448 JBrowse link
Q Eae15 Experimental allergic encephalomyelitis QTL 15 IDA RGD PMID:10545597 RGD:69695 NCBI chr18:76,477,814...77,209,844 JBrowse link
Q Eae16 Experimental allergic encephalomyelitis QTL 16 IDA RGD PMID:12517974 RGD:629629 NCBI chr 8:8,462,195...110,921,472 JBrowse link
Q Eae17 Experimental allergic encephalomyelitis QTL 17 IDA RGD PMID:12517974 RGD:629629 NCBI chr13:8,897,350...101,631,289 JBrowse link
Q Eae18 Experimental allergic encephalomyelitis QTL 18 IDA RGD PMID:11486278 RGD:1302800 NCBI chr10:107,057,622...107,211,142 JBrowse link
Q Eae18a Experimental allergic encephalomyelitis QTL 18a IDA RGD PMID:15240732 RGD:1302437 NCBI chr10:53,797,385...58,445,852 JBrowse link
Q Eae18b Experimental allergic encephalomyelitis QTL 18b IDA RGD PMID:15240732 RGD:1302437 NCBI chr10:61,248,303...67,785,171 JBrowse link
Q Eae19 Experimental allergic encephalomyelitis QTL 19 IDA RGD PMID:15716504 RGD:1549617 NCBI chr15:76,306,099...90,088,744 JBrowse link
Q Eae2 Experimental allergic encephalomyelitis QTL 2 IDA RGD PMID:9973459 RGD:69694 NCBI chr 4:21,333,343...39,505,420 JBrowse link
Q Eae20 Experimental allergic encephalomyelitis QTL 20 IDA RGD PMID:15634914 RGD:1547849 NCBI chr 4:153,031,106...158,841,762 JBrowse link
Q Eae22 Experimental allergic encephalomyelitis QTL 22 IDA RGD PMID:15634914 RGD:1547849
Q Eae23 Experimental allergic encephalomyelitis QTL 23 IDA RGD PMID:16624898 RGD:2293859 NCBI chr10:55,273,696...60,677,262 JBrowse link
Q Eae24 Experimental allergic encephalomyelitis QTL 24 IDA RGD PMID:19675581 RGD:2317591 NCBI chr 4:66,993,185...72,752,834 JBrowse link
Q Eae25 Experimental allergic encephalomyelitis QTL 25 IDA RGD PMID:19675581 RGD:2317591 NCBI chr 4:78,882,817...83,007,655 JBrowse link
Q Eae26 Experimental allergic encephalomyelitis QTL 26 IDA RGD PMID:19675581 RGD:2317591 NCBI chr 4:88,656,681...103,194,984 JBrowse link
Q Eae27 Experimental allergic encephalomyelitis QTL 27 IDA RGD PMID:19675581 RGD:2317591 NCBI chr 4:103,194,805...112,478,794 JBrowse link
Q Eae29 Experimental allergic encephalomyelitis QTL 29 IDA RGD PMID:21041731 RGD:4888518 NCBI chr 1:5,925,877...24,697,545 JBrowse link
Q Eae3 Experimental allergic encephalomyelitis QTL 3 IDA RGD PMID:9973459 RGD:69694 NCBI chr10:26,521,957...61,345,413 JBrowse link
Q Eae30 Experimental allergic encephalomyelitis QTL 30 IDA RGD PMID:20072140 RGD:6892695 NCBI chr 1:123,053,310...128,593,844 JBrowse link
Q Eae31 Experimental allergic encephalomyelitis QTL 31 IDA RGD PMID:20072140 RGD:6892695 NCBI chr 1:178,810,256...188,377,506 JBrowse link
Q Eae32 Experimental allergic encephalomyelitis QTL 32 IDA RGD PMID:12517974 RGD:629629 NCBI chr17:27,027,949...36,146,731 JBrowse link
Q Eae33 Experimental allergic encephalomyelitis QTL 33 IDA RGD PMID:12517974 RGD:629629 NCBI chr17:50,909,099...86,022,412 JBrowse link
Q Eae4 Experimental allergic encephalomyelitis QTL 4 IDA RGD PMID:10072499 RGD:69712 NCBI chr 9:1...25,661,317 JBrowse link
Q Eae5 Experimental allergic encephalomyelitis QTL 5 IDA RGD PMID:10640775 RGD:61031 NCBI chr12:19,610,870...46,669,029 JBrowse link
Q Eae8 Experimental allergic encephalomyelitis QTL 8 IDA RGD PMID:10640775 RGD:61031 NCBI chr19:24,816,041...33,061,905 JBrowse link
Q Eaex Experimental allergic encephalomyelitis QTL x IDA RGD PMID:10640775 RGD:61031 NCBI chr 5:55,715,622...100,715,622 JBrowse link
Q Eaey Experimental allergic encephalomyelitis QTL y IDA RGD PMID:10640775 RGD:61031 NCBI chr18:46,988,939...60,377,753 JBrowse link
Q Eaez Experimental allergic encephalomyelitis QTL z IDA RGD PMID:10640775 RGD:61031 NCBI chr18:12,357,786...12,874,620 JBrowse link
Q Ean1 Experimental allergic neuritis QTL 1 IDA RGD PMID:15342198 RGD:2306736
Q Ean2 Experimental allergic neuritis QTL 2 IDA RGD PMID:19299744 RGD:2306769 NCBI chr 4:83,428,419...95,853,334 JBrowse link
Q Ean3 Experimental allergic neuritis QTL 3 IDA RGD PMID:19299744 RGD:2306769 NCBI chr10:53,797,385...66,979,128 JBrowse link
Q Ean4 Experimental allergic neuritis QTL 4 IDA RGD PMID:19299744 RGD:2306769 NCBI chr10:84,022,321...93,995,963 JBrowse link
Q Ean5 Experimental allergic neuritis QTL 5 IDA RGD PMID:19299744 RGD:2306769 NCBI chr10:72,552,416...93,995,749 JBrowse link
Q Ean6 Experimental allergic neuritis QTL 6 IDA RGD PMID:19299744 RGD:2306769 NCBI chr12:19,610,870...24,139,202 JBrowse link
Q Neudeg1 Neurodegradation QTL 1 IDA RGD PMID:14586010 RGD:1358788 NCBI chr 8:30,188,867...94,457,446 JBrowse link
Q Neudeg2 Neurodegradation QTL 2 IDA RGD PMID:14586010 RGD:1358788 NCBI chr 5:24,838,710...44,045,280 JBrowse link
Q Neuinf1 Neuroinflammation QTL 1 IDA RGD PMID:14586010 RGD:1358788 NCBI chr 5:154,828,214...166,875,058 JBrowse link
Q Neuinf10 Neuroinflammation QTL 10 IDA RGD PMID:19525015 RGD:2311085 NCBI chr11:31,239,134...78,851,519 JBrowse link
Q Neuinf11 Neuroinflammation QTL 11 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 3:15,005,422...76,927,699 JBrowse link
Q Neuinf12 Neuroinflammation QTL 12 IDA RGD PMID:19525015 RGD:2311085 NCBI chr15:1...55,302,115 JBrowse link
Q Neuinf2 Neuroinflammation QTL 2 IDA RGD PMID:14586010 RGD:1358788 NCBI chr10:6,154,377...6,357,896 JBrowse link
Q Neuinf3 Neuroinflammation QTL 3 IDA RGD PMID:14586010 RGD:1358788 NCBI chr10:3,406,320...5,387,112 JBrowse link
Q Neuinf4 Neuroinflammation QTL 4 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 1:1...28,736,750 JBrowse link
Q Neuinf5 Neuroinflammation QTL 5 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 7:9,462,246...58,265,113 JBrowse link
Q Neuinf6 Neuroinflammation QTL 6 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 7:1...27,829,089 JBrowse link
Q Neuinf7 Neuroinflammation QTL 7 IDA RGD PMID:19525015 RGD:2311085 NCBI chr10:72,224,939...107,211,142 JBrowse link
Q Neuinf8 Neuroinflammation QTL 8 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 1:57,336,763...151,090,257 JBrowse link
Q Neuinf9 Neuroinflammation QTL 9 IDA RGD PMID:19525015 RGD:2311085 NCBI chr10:5,801,990...62,146,030 JBrowse link
Q Schws1 Schwannoma susceptibility QTL 1 IDA RGD PMID:16003739 RGD:1559300 NCBI chr10:40,035,094...102,359,817 JBrowse link
Q Schws2 Schwannoma susceptibility QTL 2 IDA RGD PMID:16003739 RGD:1559300
Q Schws3 Schwannoma susceptibility QTL 3 IDA RGD PMID:16003739 RGD:1559300 NCBI chr 3:118,839,124...163,839,124 JBrowse link
Q Schws4 Schwannoma susceptibility QTL 4 IDA RGD PMID:16003739 RGD:1559300 NCBI chr 6:83,190,345...106,747,639 JBrowse link
Q Schws5 Schwannoma susceptibility QTL 5 IDA RGD PMID:16003739 RGD:1559300
Q Schws6 Schwannoma susceptibility QTL 6 IDA RGD PMID:16003739 RGD:1559300 NCBI chr15:53,806,152...98,806,152 JBrowse link
Q Schws7 Schwannoma susceptibility QTL 7 IDA RGD PMID:16003739 RGD:1559300 NCBI chr10:4,765,527...19,816,042 JBrowse link
Q Schws8 Schwannoma susceptibility QTL 8 IDA RGD PMID:25303613 RGD:11566050 NCBI chr 6:94,968,928...139,968,928 JBrowse link
Q Schws9 Schwannoma susceptibility QTL 9 IDA RGD PMID:25303613 RGD:11566050 NCBI chr 6:61,747,639...106,747,639 JBrowse link
pituitary gland mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Edpm1 Estrogen-dependent pituitary mass QTL 1 IDA RGD PMID:9337394 RGD:61074 NCBI chr 2:35,134,841...88,029,593 JBrowse link
Q Edpm10 Estrogen-dependent pituitary mass QTL 10 IDA RGD PMID:9337394 RGD:61074
Q Edpm11 Estrogen-dependent pituitary mass QTL 11 IDA RGD PMID:11003699 RGD:629550 NCBI chr 9:1...43,718,459 JBrowse link
Q Edpm12 Estrogen-dependent pituitary mass QTL 12 IDA RGD PMID:11003699 RGD:629550 NCBI chr  X:2,927,898...47,927,898 JBrowse link
Q Edpm2 Estrogen-dependent pituitary mass QTL 2 IDA RGD PMID:9337394 RGD:61074 NCBI chr 2:76,539,322...202,447,032 JBrowse link
Q Edpm3 Estrogen-dependent pituitary mass QTL 3 IDA RGD PMID:9337394 RGD:61074 NCBI chr 3:53,184,692...89,878,207 JBrowse link
Q Edpm5 Estrogen-dependent pituitary mass QTL 5 IDA RGD PMID:9337394 RGD:61074 NCBI chr 5:68,984,307...104,251,008 JBrowse link
Q Edpm9 Estrogen-dependent pituitary mass QTL 9 IDA RGD PMID:9337394 RGD:61074 NCBI chr 9:63,869,687...108,869,687 JBrowse link
Q Ept1 Estrogen-induced pituitary tumorigenesis QTL 1 IDA RGD PMID:15687265 RGD:1334449 NCBI chr 6:9,843,312...20,338,915 JBrowse link
Q Ept10 Estrogen-induced pituitary tumorigenesis QTL 10 IDA RGD PMID:15687265 RGD:1334449 NCBI chr 1:192,825,253...243,914,732 JBrowse link
Q Ept13 Estrogen-induced pituitary tumorigenesis QTL 13 IDA RGD PMID:15687265 RGD:1334449 NCBI chr 1:77,494,165...122,494,165 JBrowse link
Q Ept15 Estrogen-induced pituitary tumorigenesis QTL 15 IDA RGD PMID:18420736 RGD:2292503 NCBI chr 6:9,843,312...20,338,915 JBrowse link
Q Ept16 Estrogen-induced pituitary tumorigenesis QTL 16 IDA RGD PMID:18420736 RGD:2292503 NCBI chr 3:47,233,430...110,362,260 JBrowse link
Q Ept17 Estrogen-induced pituitary tumorigenesis QTL 17 IDA RGD PMID:18420736 RGD:2292503 NCBI chr 3:6,537,645...10,778,823 JBrowse link
Q Ept18 Estrogen-induced pituitary tumorigenesis QTL 18 IDA RGD PMID:18420736 RGD:2292503 NCBI chr10:73,453,136...96,120,911 JBrowse link
Q Ept2 Estrogen-induced pituitary tumorigenesis QTL 2 IDA RGD PMID:15687265 RGD:1334449 NCBI chr 3:47,233,430...110,362,260 JBrowse link
Q Ept5 Estrogen-induced pituitary tumorigenesis QTL 5 IDA RGD PMID:17876666 RGD:1642526 NCBI chr 4:83,428,419...177,635,233 JBrowse link
Q Ept6 Estrogen-induced pituitary tumorigenesis QTL 6 IDA RGD PMID:15687265 RGD:1334449 NCBI chr 3:6,537,645...10,778,823 JBrowse link
Q Ept7 Estrogen-induced pituitary tumorigenesis QTL 7 IDA RGD PMID:17876666 RGD:1642526 NCBI chr 7:62,004,452...101,773,158 JBrowse link
Q Ept9 Estrogen-induced pituitary tumorigenesis QTL 9 IDA RGD PMID:15687265 RGD:1334449 NCBI chr10:73,453,136...96,120,911 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2384
    organ system trait 1553
      nervous/sensory system trait 117
        nervous system morphology trait 104
          brain morphology trait + 40
          cerebrospinal fluid amount 0
          dopamine amount + 0
          ependyma morphology trait 0
          glial cell morphology trait + 0
          innervation trait + 0
          meninges morphology trait 0
          nervous system integrity trait + 62
          nervous system tract morphology trait + 0
          neuron morphology trait + 0
          serotonin amount + 0
          somatic nervous system morphology trait + 0
paths to the root