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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:eye morphology trait
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Accession:VT:0002092 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color or pattern of the organ of vision and its supporting structures.



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lens clarity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Arrd3 Age-related retinal degeneration QTL 3 IDA RGD PMID:22300709 RGD:7794750 NCBI chr 1:183,970,203...243,914,901 JBrowse link
Q Lecl1 Lens clarity QTL 1 IDA RGD PMID:11252169 RGD:68701 NCBI chr 8:18,984,168...84,531,599 JBrowse link
Q Lecl2 Lens clarity QTL 2 IDA RGD PMID:11252169 RGD:68701 NCBI chr15:10,596,089...55,596,089 JBrowse link
retinal layer morphology trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Arrd1 Age-related retinal degeneration QTL 1 IDA RGD PMID:22300709 RGD:7794750 NCBI chr 1:100,357,752...183,970,443 JBrowse link
Q Arrd2 Age-related retinal degeneration QTL 2 IDA RGD PMID:22300709 RGD:7794750 NCBI chr 1:183,970,203...243,914,901 JBrowse link
uvea integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Eau1 Experimental allergic uveoretinitis QTL 1 IDA RGD PMID:10323205 RGD:61073 NCBI chr 4:70,362,013...132,642,728 JBrowse link
Q Eau2 Experimental allergic uveoretinitis QTL 2 IDA RGD PMID:10323205 RGD:61073 NCBI chr12:8,525,423...28,064,601 JBrowse link
Q Eau3 Experimental allergic uveoretinitis QTL 3 IDA RGD PMID:10323205 RGD:61073 NCBI chr10:34,490,559...45,579,777 JBrowse link
Q Eau4 Experimental allergic uveoretinitis QTL 4 IDA RGD PMID:18453595 RGD:2296064 NCBI chr 3:137,398,739...169,034,231 JBrowse link
Q Eau5 Experimental allergic uveoretinitis QTL 5 IDA RGD PMID:18453595 RGD:2296064 NCBI chr 2:202,446,871...237,938,339 JBrowse link
Q Eau6 Experimental allergic uveoretinitis QTL 6 IDA RGD PMID:18453595 RGD:2296064 NCBI chr 7:84,257,275...129,257,275 JBrowse link
Q Eau7 Experimental allergic uveoretinitis QTL 7 IDA RGD PMID:18453595 RGD:2296064 NCBI chr10:27,957,626...34,490,668 JBrowse link
Q Eau8 Experimental allergic uveoretinitis QTL 8 IDA RGD PMID:18453595 RGD:2296064 NCBI chr19:17,154,433...57,337,602 JBrowse link
Q Eau9 Experimental allergic uveoretinitis QTL 9 IDA RGD PMID:18453595 RGD:2296064 NCBI chr10:65,927,233...82,565,079 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 1500
    organism subdivision trait 181
      surface structure trait 181
        surface structure morphology trait 181
          eye morphology trait 14
            anterior eye segment morphology trait + 3
            eye moisture amount 0
            eye muscle morphology trait + 0
            eye orientation trait + 0
            eye pigmentation trait 0
            eye shape trait 0
            eye size trait 0
            eyelid morphology trait + 0
            lacrimal gland morphology trait 0
            orbit morphology trait + 0
            posterior eye segment morphology trait + 2
            sclera morphology trait + 0
            uvea morphology trait + 9
            visual axis alignment trait 0
Path 2
Term Annotations click to browse term
  vertebrate trait 1500
    organism subdivision trait 181
      head trait 14
        head morphology trait 14
          craniofacial morphology trait 14
            facial morphology trait 14
              eye morphology trait 14
                anterior eye segment morphology trait + 3
                eye moisture amount 0
                eye muscle morphology trait + 0
                eye orientation trait + 0
                eye pigmentation trait 0
                eye shape trait 0
                eye size trait 0
                eyelid morphology trait + 0
                lacrimal gland morphology trait 0
                orbit morphology trait + 0
                posterior eye segment morphology trait + 2
                sclera morphology trait + 0
                uvea morphology trait + 9
                visual axis alignment trait 0
paths to the root