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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:eye morphology trait
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Accession:VT:0002092 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color or pattern of the organ of vision and its supporting structures.
Synonyms:exact_synonym: eye morphology measurement
 xref: EFO:0004731;   EFO:0005318;   EFO:0005668;   EFO:0007858


show annotations for term's descendants           Sort by:
lens clarity trait term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Arrd3 Age-related retinal degeneration QTL 3 IDA 3.07 RGD PMID:22300709 RGD:7794750 NCBI chr 1:193,400,541...238,400,541 JBrowse link
Q Lecl1 Lens clarity QTL 1 IDA 0.001 RGD PMID:11252169 RGD:68701
Q Lecl2 Lens clarity QTL 2 IDA 0.001 RGD PMID:11252169 RGD:68701
retinal layer morphology trait term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Arrd1 Age-related retinal degeneration QTL 1 IDA 4.89 RGD PMID:22300709 RGD:7794750 NCBI chr 1:109,493,780...193,400,781 JBrowse link
Q Arrd2 Age-related retinal degeneration QTL 2 IDA 7.79 RGD PMID:22300709 RGD:7794750 NCBI chr 1:193,400,541...238,400,541 JBrowse link
uvea integrity trait term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Eau1 Experimental allergic uveoretinitis QTL 1 IDA 3.0E-4 RGD PMID:10323205 RGD:61073 NCBI chr 4:26,234,499...134,199,155 JBrowse link
Q Eau2 Experimental allergic uveoretinitis QTL 2 IDA 5.0E-4 RGD PMID:10323205 RGD:61073 NCBI chr12:1...33,700,600 JBrowse link
Q Eau3 Experimental allergic uveoretinitis QTL 3 IDA 0.004 RGD PMID:10323205 RGD:61073 NCBI chr10:18,035,782...63,035,782 JBrowse link
Q Eau4 Experimental allergic uveoretinitis QTL 4 IDA 0.0011 RGD PMID:18453595 RGD:2296064
Q Eau5 Experimental allergic uveoretinitis QTL 5 IDA 0.0021 RGD PMID:18453595 RGD:2296064 NCBI chr 2:205,135,267...225,627,153 JBrowse link
Q Eau6 Experimental allergic uveoretinitis QTL 6 IDA 0.0029 RGD PMID:18453595 RGD:2296064
Q Eau7 Experimental allergic uveoretinitis QTL 7 IDA 0.0049 RGD PMID:18453595 RGD:2296064 NCBI chr10:35,509,383...80,509,383 JBrowse link
Q Eau8 Experimental allergic uveoretinitis QTL 8 IDA 0.0163 RGD PMID:18453595 RGD:2296064
Q Eau9 Experimental allergic uveoretinitis QTL 9 IDA 0.0169 RGD PMID:18453595 RGD:2296064 NCBI chr10:64,139,597...83,061,459 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2911
    organism subdivision trait 211
      surface structure trait 211
        surface structure morphology trait 211
          eye morphology trait 22
            anterior eye segment morphology trait + 7
            eye integrity trait 0
            eye moisture amount 0
            eye molecular composition trait + 0
            eye muscle morphology trait + 0
            eye orientation trait + 0
            eye pigmentation trait + 0
            eye shape trait 0
            eye size trait 0
            eyelid morphology trait + 0
            lacrimal gland morphology trait 0
            orbit morphology trait + 0
            posterior eye segment morphology trait + 4
            sclera morphology trait + 0
            uvea morphology trait + 13
            visual axis alignment trait 0
Path 2
Term Annotations click to browse term
  vertebrate trait 2911
    organism subdivision trait 211
      head trait 22
        head morphology trait 22
          craniofacial morphology trait 22
            facial morphology trait 22
              eye morphology trait 22
                anterior eye segment morphology trait + 7
                eye integrity trait 0
                eye moisture amount 0
                eye molecular composition trait + 0
                eye muscle morphology trait + 0
                eye orientation trait + 0
                eye pigmentation trait + 0
                eye shape trait 0
                eye size trait 0
                eyelid morphology trait + 0
                lacrimal gland morphology trait 0
                orbit morphology trait + 0
                posterior eye segment morphology trait + 4
                sclera morphology trait + 0
                uvea morphology trait + 13
                visual axis alignment trait 0
paths to the root