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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS
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The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD,
http://rgd.mcw.edu
), Mouse Genome Informatics at the Jackson Laboratory (
http://www.informatics.jax.org/
) and the Animal QTL database at Iowa State University (
http://www.animalgenome.org/cgi-bin/QTLdb/index
). For more information about this vocabulary, or to request additions or changes, please contact us (
https://rgd.mcw.edu/rgdweb/contact/contactus.html
).
Term:
eye morphology trait
go back to main search page
Accession:
VT:0002092
browse the term
Definition:
Any measurable or observable characteristic related to the shape, structure, color or pattern of the organ of vision and its supporting structures.
Synonyms:
exact_synonym:
eye morphology measurement
xref:
EFO:0004731
;
EFO:0005318
;
EFO:0005668
;
EFO:0007858
show annotations for term's descendants Sort by:
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Rat (22 )
Mouse (0 )
Human (10423 )
Chinchilla (0 )
Bonobo (0 )
Dog (0 )
Squirrel (0 )
Pig (0 )
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All
QTL (14)
Strains (8)
lens clarity trait
Symbol
Object Name
Evidence
rsID
P Value
LOD Score
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
Q
Arrd3
Age-related retinal degeneration QTL 3
IDA
3.07
RGD
PMID:22300709
RGD:7794750
NCBI chr 1:193,400,541...238,400,541
Q
Lecl1
Lens clarity QTL 1
IDA
0.001
RGD
PMID:11252169
RGD:68701
Q
Lecl2
Lens clarity QTL 2
IDA
0.001
RGD
PMID:11252169
RGD:68701
retinal layer morphology trait
Symbol
Object Name
Evidence
rsID
P Value
LOD Score
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
Q
Arrd1
Age-related retinal degeneration QTL 1
IDA
4.89
RGD
PMID:22300709
RGD:7794750
NCBI chr 1:109,493,780...193,400,781
Q
Arrd2
Age-related retinal degeneration QTL 2
IDA
7.79
RGD
PMID:22300709
RGD:7794750
NCBI chr 1:193,400,541...238,400,541
uvea integrity trait
Symbol
Object Name
Evidence
rsID
P Value
LOD Score
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
Q
Eau1
Experimental allergic uveoretinitis QTL 1
IDA
3.0E-4
RGD
PMID:10323205
RGD:61073
NCBI chr 4:26,234,499...134,199,155
Q
Eau2
Experimental allergic uveoretinitis QTL 2
IDA
5.0E-4
RGD
PMID:10323205
RGD:61073
NCBI chr12:1...33,700,600
Q
Eau3
Experimental allergic uveoretinitis QTL 3
IDA
0.004
RGD
PMID:10323205
RGD:61073
NCBI chr10:18,035,782...63,035,782
Q
Eau4
Experimental allergic uveoretinitis QTL 4
IDA
0.0011
RGD
PMID:18453595
RGD:2296064
Q
Eau5
Experimental allergic uveoretinitis QTL 5
IDA
0.0021
RGD
PMID:18453595
RGD:2296064
NCBI chr 2:205,135,267...225,627,153
Q
Eau6
Experimental allergic uveoretinitis QTL 6
IDA
0.0029
RGD
PMID:18453595
RGD:2296064
Q
Eau7
Experimental allergic uveoretinitis QTL 7
IDA
0.0049
RGD
PMID:18453595
RGD:2296064
NCBI chr10:35,509,383...80,509,383
Q
Eau8
Experimental allergic uveoretinitis QTL 8
IDA
0.0163
RGD
PMID:18453595
RGD:2296064
Q
Eau9
Experimental allergic uveoretinitis QTL 9
IDA
0.0169
RGD
PMID:18453595
RGD:2296064
NCBI chr10:64,139,597...83,061,459
Term paths to the root
one shortest
all shortest
one longest
all longest
one shortest and longest
all
Path 1
Term
Annotations
vertebrate trait
2911
organism subdivision trait
211
surface structure trait
211
surface structure morphology trait
211
eye morphology trait
22
anterior eye segment morphology trait
+
7
eye integrity trait
0
eye moisture amount
0
eye molecular composition trait
+
0
eye muscle morphology trait
+
0
eye orientation trait
+
0
eye pigmentation trait
+
0
eye shape trait
0
eye size trait
0
eyelid morphology trait
+
0
lacrimal gland morphology trait
0
orbit morphology trait
+
0
posterior eye segment morphology trait
+
4
sclera morphology trait
+
0
uvea morphology trait
+
13
visual axis alignment trait
0
Path 2
Term
Annotations
vertebrate trait
2911
organism subdivision trait
211
head trait
22
head morphology trait
22
craniofacial morphology trait
22
facial morphology trait
22
eye morphology trait
22
anterior eye segment morphology trait
+
7
eye integrity trait
0
eye moisture amount
0
eye molecular composition trait
+
0
eye muscle morphology trait
+
0
eye orientation trait
+
0
eye pigmentation trait
+
0
eye shape trait
0
eye size trait
0
eyelid morphology trait
+
0
lacrimal gland morphology trait
0
orbit morphology trait
+
0
posterior eye segment morphology trait
+
4
sclera morphology trait
+
0
uvea morphology trait
+
13
visual axis alignment trait
0