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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:vitamin A deficiency pathway
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Accession:PW:0001585 term browser browse the term
Synonyms:exact_synonym: deficiency of vitamin A pathway;   hypovitaminosis A pathway
 related_synonym: SMP:00336


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vitamin A deficiency pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 ISO SMPDB SMP:00336 NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:227,427,070...227,579,500 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 ISO SMPDB SMP:00336 NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:80,758,142...80,837,883 		JBrowse link
G Awat1 acyl-CoA wax alcohol acyltransferase 1 ISO SMPDB SMP:00336 NCBI chr  X:69,708,286...69,714,531
Ensembl chr  X:69,708,286...69,714,531 		JBrowse link
G Bco1 beta-carotene oxygenase 1 ISO SMPDB SMP:00336 NCBI chr19:62,058,061...62,094,923
Ensembl chr19:62,058,089...62,094,917 		JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 ISO SMPDB SMP:00336 NCBI chr 1:244,883,822...244,887,657
Ensembl chr 1:244,883,752...244,887,657 		JBrowse link
G Cyp2a1 cytochrome P450, family 2, subfamily a, polypeptide 1 ISO SMPDB SMP:00336 NCBI chr 1:91,359,278...91,372,554
Ensembl chr 1:91,359,272...91,389,730 		JBrowse link
G Cyp2a3 cytochrome P450, family 2, subfamily a, polypeptide 3 ISO SMPDB SMP:00336 NCBI chr 1:91,299,584...91,307,650
Ensembl chr 1:91,299,561...91,307,649 		JBrowse link
G Cyp2b3 cytochrome P450, family 2, subfamily b, polypeptide 3 ISO SMPDB SMP:00336 NCBI chr 1:90,780,468...90,859,852 JBrowse link
G Cyp3a18 cytochrome P450, family 3, subfamily a, polypeptide 18 ISO SMPDB SMP:00336 NCBI chr12:13,994,312...14,044,185
Ensembl chr12:13,994,311...14,045,788 		JBrowse link
G Cyp3a2 cytochrome P450, family 3, subfamily a, polypeptide 2 ISO SMPDB SMP:00336 NCBI chr12:14,321,771...14,343,886
Ensembl chr12:14,321,771...14,343,857 		JBrowse link
G Cyp3a9 cytochrome P450, family 3, subfamily a, polypeptide 9 ISO SMPDB SMP:00336 NCBI chr12:21,919,955...21,960,160
Ensembl chr12:21,919,940...21,960,154 		JBrowse link
G Dgat1 diacylglycerol O-acyltransferase 1 ISO SMPDB SMP:00336 NCBI chr 7:110,104,514...110,119,091
Ensembl chr 7:110,098,906...110,115,016 		JBrowse link
G Dhrs3 dehydrogenase/reductase 3 ISO SMPDB SMP:00336 NCBI chr 5:162,031,853...162,065,655
Ensembl chr 5:162,031,386...162,065,653 		JBrowse link
G Dhrs4 dehydrogenase/reductase 4 ISO SMPDB SMP:00336 NCBI chr15:32,924,482...32,948,103
Ensembl chr15:32,936,522...32,948,101 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 ISO SMPDB SMP:00336 NCBI chr 3:74,553,357...74,579,535
Ensembl chr 3:74,555,606...74,581,376 		JBrowse link
G Dnajb11 DnaJ heat shock protein family (Hsp40) member B11 ISO SMPDB SMP:00336 NCBI chr11:91,656,334...91,672,800
Ensembl chr11:91,656,335...91,672,800 		JBrowse link
G Erp29 endoplasmic reticulum protein 29 ISO SMPDB SMP:00336 NCBI chr12:40,750,177...40,756,607
Ensembl chr12:40,750,314...40,757,010 		JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 ISO SMPDB SMP:00336 NCBI chr 7:22,997,962...23,012,293
Ensembl chr 7:22,997,962...23,012,293 		JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 ISO SMPDB SMP:00336 NCBI chr 3:38,453,016...38,457,475
Ensembl chr 3:38,453,041...38,458,790 		JBrowse link
G Hyou1 hypoxia up-regulated 1 ISO SMPDB SMP:00336 NCBI chr 8:53,602,882...53,614,998
Ensembl chr 8:53,602,604...53,614,997 		JBrowse link
G Lrat lecithin retinol acyltransferase ISO SMPDB SMP:00336 NCBI chr 2:170,562,148...170,571,212
Ensembl chr 2:170,565,543...170,571,148 		JBrowse link
G Pdia2 protein disulfide isomerase family A, member 2 ISO SMPDB SMP:00336 NCBI chr10:15,720,301...15,723,386
Ensembl chr10:15,720,301...15,723,396 		JBrowse link
G Pdia4 protein disulfide isomerase family A, member 4 ISO SMPDB SMP:00336 NCBI chr 4:78,134,144...78,153,191
Ensembl chr 4:78,134,144...78,153,191 		JBrowse link
G Pdia6 protein disulfide isomerase family A, member 6 ISO SMPDB SMP:00336 NCBI chr 6:45,791,704...45,808,947
Ensembl chr 6:45,791,678...45,810,091 		JBrowse link
G Pnpla4 patatin like phospholipase domain containing 4 ISO SMPDB SMP:00336 NCBI chr  X:46,200,351...46,205,517
Ensembl chr  X:46,193,332...46,205,089 		JBrowse link
G Ppib peptidylprolyl isomerase B ISO SMPDB SMP:00336 NCBI chr 8:75,498,966...75,504,823
Ensembl chr 8:75,498,797...75,504,847 		JBrowse link
G Rdh11 retinol dehydrogenase 11 ISO SMPDB SMP:00336 NCBI chr 6:103,712,373...103,728,247
Ensembl chr 6:103,712,374...103,729,741 		JBrowse link
G Rdh12 retinol dehydrogenase 12 ISO SMPDB SMP:00336 NCBI chr 6:103,748,457...103,761,379
Ensembl chr 6:103,748,427...103,761,380 		JBrowse link
G Rdh16 retinol dehydrogenase 16 ISO SMPDB SMP:00336 NCBI chr 7:65,499,763...65,510,304 JBrowse link
G Rdh8 retinol dehydrogenase 8 ISO SMPDB SMP:00336 NCBI chr 8:27,629,380...27,636,651
Ensembl chr 8:27,629,380...27,636,651 		JBrowse link
G Retsat retinol saturase ISO SMPDB SMP:00336 NCBI chr 4:106,211,459...106,220,222
Ensembl chr 4:106,211,436...106,229,552 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO SMPDB SMP:00336 NCBI chr 2:251,425,228...251,457,209
Ensembl chr 2:251,425,368...251,457,156 		JBrowse link
G Sdf2l1 stromal cell-derived factor 2-like 1 ISO SMPDB SMP:00336 NCBI chr11:97,376,878...97,379,120
Ensembl chr11:97,376,878...97,379,120 		JBrowse link
G Ugt1a1 UDP glucuronosyltransferase family 1 member A1 ISO SMPDB SMP:00336 NCBI chr 9:96,249,143...96,256,264
Ensembl chr 9:96,144,786...96,256,264 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6091
    disease pathway 1954
      nutritional and metabolic disease pathway 709
        nutritional disorder pathway 56
          avitaminosis pathway 46
            vitamin A deficiency pathway 34
paths to the root