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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:spliceosome pathway
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Accession:PW:0001073 term browser browse the term
Definition:The spliceosome is a multimegadalton ribonucleoprotein complex that removes the exons to produce the mature mRNA, including several mature mRNAs from a single RNA transcript via alternative splicing. A complex assembly/disassembly pathway mediates the two chemical steps of a splicing event. lncRNAs are also frequently spliced.
Synonyms:related_synonym: KEGG:03040
View Interactive Diagram


show annotations for term's descendants           Sort by:
spliceosome pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aar2 AAR2 splicing factor ISO RGD PMID:23592432 RGD:9686090 NCBI chr 3:145,057,368...145,079,838
Ensembl chr 3:145,057,458...145,080,166 		JBrowse link
G Acin1 apoptotic chromatin condensation inducer 1 IEA KEGG rno:03040 NCBI chr15:28,102,112...28,147,001
Ensembl chr15:28,102,112...28,147,001 		JBrowse link
G Alyref Aly/REF export factor IEA KEGG rno:03040 NCBI chr10:105,871,424...105,875,076
Ensembl chr10:105,871,306...105,875,069 		JBrowse link
G Aqr aquarius intron-binding spliceosomal factor IEA
ISO		 KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 3:100,874,987...100,945,026
Ensembl chr 3:100,874,987...100,945,044 		JBrowse link
G Bcas2 BCAS2, pre-mRNA processing factor IEA
ISO		 KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 2:190,692,503...190,700,386
Ensembl chr 2:190,692,461...190,700,389 		JBrowse link
G Bud31 BUD31 homolog IEA
ISO		 KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr12:9,462,838...9,470,387
Ensembl chr12:9,462,441...9,470,509 		JBrowse link
G Ccdc12 coiled-coil domain containing 12 IEA
ISO		 KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 8:110,635,276...110,686,417
Ensembl chr 8:110,635,710...110,686,417 		JBrowse link
G Cdc40 cell division cycle 40 IEA KEGG rno:03040 NCBI chr20:44,273,080...44,325,605
Ensembl chr20:44,273,089...44,325,358 		JBrowse link
G Cdc5l cell division cycle 5-like IEA
ISO		 KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 9:15,564,949...15,603,453
Ensembl chr 9:15,564,767...15,603,450 		JBrowse link
G Cherp calcium homeostasis endoplasmic reticulum protein IEA KEGG rno:03040 NCBI chr16:17,367,455...17,380,507
Ensembl chr16:17,367,455...17,380,507 		JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 IEA
ISO		 KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 3:133,338,593...133,354,329
Ensembl chr 3:133,337,039...133,354,302
Ensembl chr 6:133,337,039...133,354,302 		JBrowse link
G Ctnnbl1 catenin, beta like 1 IEA
ISO		 KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 3:146,387,940...146,548,987
Ensembl chr 3:146,387,889...146,548,987 		JBrowse link
G Cwc15 CWC15 spliceosome-associated protein IEA
ISO		 KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 8:11,305,401...11,316,326
Ensembl chr 8:11,305,424...11,316,325
Ensembl chr 2:11,305,424...11,316,325 		JBrowse link
G Ddx23 DEAD-box helicase 23 IEA
ISO		 KEGG
RGD		 PMID:19239890 PMID:23454554 rno:03040, RGD:9686089, RGD:9686093 NCBI chr 7:129,797,620...129,814,909
Ensembl chr 7:129,797,614...129,814,949 		JBrowse link
G Ddx39b DExD-box helicase 39B ISO RGD PMID:23454554 RGD:9686093 NCBI chr20:3,547,702...3,585,064
Ensembl chr20:3,572,056...3,584,996 		JBrowse link
G Ddx42 DEAD-box helicase 42 IEA
ISO		 KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr10:91,148,926...91,180,940
Ensembl chr10:91,148,254...91,180,939 		JBrowse link
G Ddx46 DEAD-box helicase 46 IEA
ISO		 KEGG
RGD		 PMID:23454554 rno:03040, RGD:9686093 NCBI chr17:8,942,070...8,988,440
Ensembl chr17:8,944,454...8,988,439 		JBrowse link
G Ddx5 DEAD-box helicase 5 IEA KEGG rno:03040 NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283 		JBrowse link
G Dhx15 DEAH-box helicase 15 IEA KEGG rno:03040 NCBI chr14:58,787,147...58,825,083
Ensembl chr14:58,787,127...58,825,088 		JBrowse link
G Dhx16 DEAH-box helicase 16 IEA
ISO		 KEGG
RGD		 PMID:23454554 rno:03040, RGD:9686093 NCBI chr20:2,862,000...2,874,991
Ensembl chr20:2,862,000...2,874,948 		JBrowse link
G Dhx38 DEAH-box helicase 38 IEA
ISO		 KEGG
RGD		 PMID:23454554 rno:03040, RGD:9686093 NCBI chr19:37,512,893...37,530,135
Ensembl chr19:37,512,891...37,530,140 		JBrowse link
G Dhx8 DEAH-box helicase 8 IEA
ISO		 KEGG
RGD		 PMID:23454554 rno:03040, RGD:9686093 NCBI chr10:86,667,641...86,704,198
Ensembl chr10:86,667,834...86,705,137 		JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 IEA
ISO		 KEGG
RGD		 PMID:23454554 PMID:23592432 rno:03040, RGD:9686093, RGD:9686090 NCBI chr10:87,804,893...87,852,181
Ensembl chr10:87,804,892...87,846,079 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 IEA
ISO		 KEGG
RGD		 PMID:15145352 rno:03040, RGD:9686404 NCBI chr10:104,549,038...104,559,032
Ensembl chr10:104,549,038...104,559,057 		JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 ISO RGD PMID:17537823 RGD:9686091 NCBI chr17:6,507,728...6,510,385
Ensembl chr17:6,507,275...6,509,375 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 IEA
ISO		 KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249 		JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 IEA KEGG rno:03040 NCBI chr 3:60,578,574...60,588,755
Ensembl chr 3:60,578,673...60,588,306 		JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:35,857,040...35,862,935
Ensembl chr10:35,857,041...35,863,344 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C IEA
ISO		 KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr15:24,779,593...24,809,213
Ensembl chr15:24,779,450...24,809,183 		JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:17537823 RGD:9686091 NCBI chr14:9,615,375...9,638,975
Ensembl chr14:9,615,479...9,633,786 		JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:34,692,868...34,702,849
Ensembl chr10:34,693,555...34,702,846 		JBrowse link
G Hnrnph3 heterogeneous nuclear ribonucleoprotein H3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr20:25,616,400...25,625,814
Ensembl chr20:25,614,733...25,625,750 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEA
ISO		 KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997 		JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:84,098,558...84,111,568
Ensembl chr 1:84,100,879...84,111,553 		JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 7:14,438,703...14,476,781
Ensembl chr 7:14,438,688...14,476,762 		JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:148,542,999...148,574,888
Ensembl chr 5:148,543,044...148,574,867 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U IEA
ISO		 KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A IEA KEGG rno:03040 NCBI chr20:3,870,765...3,873,221
Ensembl chr20:3,856,006...3,873,227 		JBrowse link
G Hspa1b heat shock protein family A (Hsp70) member 1B IEA KEGG rno:03040 NCBI chr20:3,855,104...3,859,148
Ensembl chr20:3,856,006...3,873,240
Ensembl chr20:3,856,006...3,873,240 		JBrowse link
G Hspa1l heat shock protein family A (Hsp70) member 1 like IEA KEGG rno:03040 NCBI chr20:3,848,843...3,855,571
Ensembl chr20:3,848,843...3,855,571 		JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 IEA KEGG rno:03040 NCBI chr 6:95,128,504...95,131,281
Ensembl chr 6:95,128,350...95,131,287 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IEA
ISO		 KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259 		JBrowse link
G Isy1 ISY1 splicing factor homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188 		JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO		 KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266 		JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO		 KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr 4:124,021,023...124,027,269
Ensembl chr 4:124,021,023...124,027,269 		JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO		 KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr16:18,755,481...18,761,106
Ensembl chr16:18,755,484...18,760,926 		JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated IEA KEGG rno:03040 NCBI chr 4:85,951,073...85,954,289
Ensembl chr 6:104,652,477...104,654,165
Ensembl chr 4:104,652,477...104,654,165 		JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO		 KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr19:29,098,254...29,112,858
Ensembl chr13:42,114,032...42,116,484
Ensembl chr19:42,114,032...42,116,484 		JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO		 KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr 7:8,856,698...8,859,113
Ensembl chr 7:8,856,489...8,859,119 		JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 4:47,306,259...47,312,125
Ensembl chr 4:47,306,295...47,314,293 		JBrowse link
G Magoh mago homolog, exon junction complex subunit IEA KEGG rno:03040 NCBI chr 5:122,639,268...122,646,650
Ensembl chr 5:122,639,308...122,646,617 		JBrowse link
G Magohb mago homolog B, exon junction complex subunit IEA
ISO		 KEGG
RGD		 PMID:15145352 rno:03040, RGD:9686404 NCBI chr 4:165,034,131...165,041,977
Ensembl chr 4:165,034,122...165,041,967 		JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 2:144,639,819...144,814,395
Ensembl chr 2:144,670,285...144,814,368 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 IEA KEGG rno:03040 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089 		JBrowse link
G Pcbp1 poly(rC) binding protein 1 IEA KEGG rno:03040 NCBI chr 4:118,972,698...118,974,705
Ensembl chr 4:118,972,661...118,976,500 		JBrowse link
G Phf5a PHD finger protein 5A IEA KEGG rno:03040 NCBI chr 7:113,378,469...113,385,035
Ensembl chr 7:113,378,471...113,385,460 		JBrowse link
G Pigz phosphatidylinositol glycan anchor biosynthesis, class Z IEA KEGG rno:03040 NCBI chr11:68,831,847...68,851,798 JBrowse link
G Plrg1 pleiotropic regulator 1 IEA
ISO		 KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 2:168,408,139...168,424,470
Ensembl chr 2:168,408,124...168,424,522 		JBrowse link
G Pnn pinin, desmosome associated protein ISO RGD PMID:15145352 RGD:9686404 NCBI chr 6:76,758,138...76,766,451
Ensembl chr 6:76,758,117...76,766,889 		JBrowse link
G Ppie peptidylprolyl isomerase E IEA
ISO		 KEGG
RGD		 PMID:18544344 PMID:23742842 rno:03040, RGD:9686376, RGD:9686094 NCBI chr 5:135,406,172...135,419,332
Ensembl chr 5:135,406,176...135,419,235 		JBrowse link
G Ppig peptidylprolyl isomerase G ISO RGD PMID:18544344 RGD:9686376 NCBI chr 3:54,484,023...54,512,929
Ensembl chr 3:54,484,023...54,512,926 		JBrowse link
G Ppih peptidylprolyl isomerase H IEA
ISO		 KEGG
RGD		 PMID:18544344 rno:03040, RGD:9686376 NCBI chr 5:132,906,324...132,924,341
Ensembl chr 5:132,906,328...132,924,267 		JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 IEA
ISO		 KEGG
RGD		 PMID:18544344 PMID:23742842 rno:03040, RGD:9686376, RGD:9686094 NCBI chr20:7,302,292...7,322,349
Ensembl chr20:7,302,621...7,322,354 		JBrowse link
G Ppil2 peptidylprolyl isomerase like 2 ISO RGD PMID:18544344 RGD:9686376 NCBI chr11:83,897,719...83,920,970
Ensembl chr11:83,897,764...83,922,144 		JBrowse link
G Ppil3 peptidylprolyl isomerase like 3 ISO RGD PMID:18544344 RGD:9686376 NCBI chr 9:59,966,405...59,980,147
Ensembl chr 9:59,964,919...59,979,886 		JBrowse link
G Pqbp1 polyglutamine binding protein 1 IEA KEGG rno:03040 NCBI chr  X:14,603,516...14,608,091
Ensembl chr  X:14,603,539...14,608,087 		JBrowse link
G Prpf18 pre-mRNA processing factor 18 IEA
ISO		 KEGG
RGD		 PMID:24452469 rno:03040, RGD:9686092 NCBI chr17:73,630,560...73,661,210
Ensembl chr17:73,630,571...73,690,979 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 IEA
ISO		 KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662 		JBrowse link
G Prpf3 pre-mRNA processing factor 3 IEA
ISO		 KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 2:183,379,041...183,403,526
Ensembl chr 2:183,378,718...183,403,489 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 IEA
ISO		 KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 1:65,575,887...65,587,561
Ensembl chr 1:65,575,887...65,587,873 		JBrowse link
G Prpf38a pre-mRNA processing factor 38A IEA KEGG rno:03040 NCBI chr 5:123,312,461...123,324,160
Ensembl chr 5:123,311,482...123,323,972 		JBrowse link
G Prpf38b pre-mRNA processing factor 38B IEA KEGG rno:03040 NCBI chr 2:196,553,224...196,562,271
Ensembl chr 2:196,553,225...196,562,250 		JBrowse link
G Prpf4 pre-mRNA splicing tri-snRNP complex factor 4 IEA
ISO		 KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 5:75,859,934...75,873,924
Ensembl chr 5:75,859,924...75,873,919 		JBrowse link
G Prpf40a pre-mRNA processing factor 40 homolog A IEA KEGG rno:03040 NCBI chr 3:37,625,585...37,689,859
Ensembl chr 3:37,627,690...37,690,886 		JBrowse link
G Prpf6 pre-mRNA processing factor 6 IEA
ISO		 KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 3:168,706,952...168,771,191
Ensembl chr 3:168,704,299...168,774,991 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 IEA
ISO		 KEGG
RGD		 PMID:23592432 rno:03040, RGD:9686090 NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr 7:9,842,574...9,852,332
Ensembl chr 7:9,842,574...9,852,397 		JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 2:207,812,659...207,874,019
Ensembl chr 2:207,812,920...207,873,506 		JBrowse link
G Puf60 poly-U binding splicing factor 60 IEA KEGG rno:03040 NCBI chr 7:107,782,799...107,793,759
Ensembl chr 7:107,782,770...107,794,531 		JBrowse link
G Qki QKI, KH domain containing RNA binding ISO RGD PMID:23385723 RGD:9686381 NCBI chr 1:50,387,716...50,501,568
Ensembl chr 1:50,387,698...50,498,831 		JBrowse link
G Rbm17 RNA binding motif protein 17 IEA KEGG rno:03040 NCBI chr17:66,937,140...66,954,034
Ensembl chr17:66,937,140...66,954,014 		JBrowse link
G Rbm22 RNA binding motif protein 22 IEA
ISO		 KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr18:54,013,374...54,024,182
Ensembl chr18:54,013,351...54,024,569 		JBrowse link
G Rbm25 RNA binding motif protein 25 IEA KEGG rno:03040 NCBI chr 6:103,271,775...103,319,090
Ensembl chr 6:103,271,801...103,317,854 		JBrowse link
G Rbm25l1 RNA binding motif protein 25-like 1 IEA KEGG rno:03040 NCBI chr10:10,267,026...10,270,510
Ensembl chr10:10,267,260...10,269,710
Ensembl chr 6:10,267,260...10,269,710 		JBrowse link
G Rbm8a RNA binding motif protein 8A IEA
ISO		 KEGG
RGD		 PMID:15145352 rno:03040, RGD:9686404 NCBI chr 2:184,165,189...184,167,959
Ensembl chr 2:184,165,193...184,167,959 		JBrowse link
G Rbmx RNA binding motif protein, X-linked IEA
ISO		 KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr  X:135,305,237...135,314,806
Ensembl chr  X:135,305,325...135,314,743 		JBrowse link
G Rbmxl1 Rbmx like 1 IEA KEGG rno:03040 NCBI chr19:29,407,902...29,411,519
Ensembl chr19:29,407,912...29,412,859 		JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 ISO RGD PMID:15145352 RGD:9686404 NCBI chr10:13,445,516...13,455,858
Ensembl chr10:13,445,653...13,455,858 		JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP IEA KEGG rno:03040 NCBI chr 1:202,690,472...202,699,136
Ensembl chr 1:202,690,459...202,699,136 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein ISO RGD PMID:23592432 RGD:9686090 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038 		JBrowse link
G Sf1 splicing factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 1:203,670,016...203,683,432
Ensembl chr 1:203,670,018...203,684,330 		JBrowse link
G Sf3a1 splicing factor 3A subunit 1 IEA
ISO		 KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr14:79,031,394...79,052,144
Ensembl chr14:79,031,394...79,052,144 		JBrowse link
G Sf3a2 splicing factor 3A subunit 2 IEA
ISO		 KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530 		JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 IEA
ISO		 KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 5:136,967,713...136,987,345
Ensembl chr 5:136,967,691...136,987,361 		JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 IEA
ISO		 KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300 		JBrowse link
G Sf3b2 splicing factor 3b, subunit 2 IEA
ISO		 KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 1:202,570,423...202,590,774
Ensembl chr 1:202,570,423...202,590,759 		JBrowse link
G Sf3b3 splicing factor 3b, subunit 3 IEA
ISO		 KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr19:38,782,749...38,820,271
Ensembl chr19:38,783,040...38,820,245 		JBrowse link
G Sf3b4 splicing factor 3B subunit 4 IEA
ISO		 KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 2:183,732,791...183,737,545
Ensembl chr 2:183,732,754...183,737,959 		JBrowse link
G Sf3b5 splicing factor 3b, subunit 5 IEA
ISO		 KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 1:7,357,040...7,357,752
Ensembl chr 1:7,350,731...7,357,839 		JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:27,826,044...27,835,086
Ensembl chr 6:27,826,029...27,835,156 		JBrowse link
G Slu7 SLU7 homolog, splicing factor IEA
ISO		 KEGG
RGD		 PMID:24452469 rno:03040, RGD:9686092 NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349 		JBrowse link
G Smndc1 survival motor neuron domain containing 1 IEA KEGG rno:03040 NCBI chr 1:252,389,675...252,400,749
Ensembl chr 1:252,389,673...252,401,616 		JBrowse link
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 ISO RGD PMID:23592432 PMID:23454554 RGD:9686090, RGD:9686093 NCBI chr 3:114,428,854...114,458,194
Ensembl chr 3:114,428,854...114,458,182 		JBrowse link
G Snrnp27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 IEA KEGG rno:03040 NCBI chr 4:119,123,676...119,133,234
Ensembl chr 4:119,121,877...119,133,234 		JBrowse link
G Snrnp40 small nuclear ribonucleoprotein U5 subunit 40 IEA KEGG rno:03040 NCBI chr 5:142,700,632...142,733,776
Ensembl chr 5:142,700,534...142,733,776 		JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 IEA
ISO		 KEGG
RGD		 PMID:23592432 rno:03040, RGD:9686090 NCBI chr 1:95,856,038...95,876,434
Ensembl chr 1:95,856,036...95,876,392 		JBrowse link
G Snrpa small nuclear ribonucleoprotein polypeptide A IEA
ISO		 KEGG
RGD		 PMID:23592432 rno:03040, RGD:9686090 NCBI chr 1:82,481,770...82,490,540
Ensembl chr 1:82,481,770...82,490,538 		JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:119,641,402...119,654,653
Ensembl chr 1:119,638,481...119,654,653 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 IEA
ISO		 KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339 		JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 IEA
ISO		 KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 3:130,399,239...130,408,821
Ensembl chr 3:130,399,248...130,408,812 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C IEA
ISO		 KEGG
RGD		 PMID:23592432 rno:03040, RGD:9686090 NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638
Ensembl chr10:5,888,453...5,906,638 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide IEA
ISO		 KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide IEA
ISO		 KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351
Ensembl chr20:78,798,377...78,803,351 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E IEA
ISO		 KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310
Ensembl chr 8:45,050,986...45,057,310 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F IEA
ISO		 KEGG
RGD		 PMID:17537823 PMID:19239890 rno:03040, RGD:9686091, RGD:9686089 NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826
Ensembl chr  X:118,812,252...118,819,826 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 IEA
ISO		 KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 7:113,565,293...113,570,887
Ensembl chr 7:113,565,295...113,570,872
Ensembl chr 1:113,565,295...113,570,872 		JBrowse link
G Snu13l1 small nuclear ribonucleoprotein 13 like 1 IEA KEGG rno:03040 NCBI chr  X:150,624,087...150,624,525
Ensembl chr  X:150,624,087...150,624,473 		JBrowse link
G Snw1 SNW domain containing 1 IEA
ISO		 KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536 		JBrowse link
G Srrm1 serine and arginine repetitive matrix 1 ISO RGD PMID:17537823 PMID:15145352 RGD:9686091, RGD:9686404 NCBI chr 5:147,559,515...147,591,895
Ensembl chr 5:147,559,514...147,591,849 		JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:12,815,471...12,848,750
Ensembl chr10:12,815,471...12,848,751 		JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 ISO RGD PMID:23498935 RGD:9686382 NCBI chr12:39,998,975...40,158,897
Ensembl chr12:39,999,488...40,155,725 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 5:148,088,759...148,102,964
Ensembl chr 5:148,088,823...148,101,768 		JBrowse link
G Srsf11 serine and arginine rich splicing factor 11 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 2:247,074,623...247,101,460
Ensembl chr 2:247,074,631...247,101,425 		JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:47,606,526...47,631,509
Ensembl chr 5:47,606,285...47,629,778 		JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:102,052,158...102,055,365
Ensembl chr10:102,052,314...102,055,338 		JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr20:7,091,928...7,101,860
Ensembl chr20:7,091,910...7,101,078 		JBrowse link
G Srsf4 serine and arginine rich splicing factor 4 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 5:144,060,981...144,090,798
Ensembl chr 5:144,061,463...144,089,229 		JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 6:100,605,165...100,610,192
Ensembl chr 6:100,605,456...100,610,177 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 3:151,589,546...151,594,869
Ensembl chr 3:151,589,535...151,594,860 		JBrowse link
G Srsf7 serine and arginine rich splicing factor 7 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 6:14,811,775...14,818,968
Ensembl chr 6:14,811,808...14,818,965 		JBrowse link
G Srsf9 serine and arginine rich splicing factor 9 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr12:41,278,225...41,284,502
Ensembl chr12:41,275,687...41,284,499 		JBrowse link
G Syf2 SYF2 pre-mRNA-splicing factor IEA
ISO		 KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 5:147,156,492...147,164,416
Ensembl chr 5:147,156,480...147,164,414 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein ISO RGD PMID:17537823 RGD:9686091 NCBI chr 8:89,402,487...89,435,517
Ensembl chr 8:89,402,866...89,435,515 		JBrowse link
G Tcerg1 transcription elongation regulator 1 IEA KEGG rno:03040 NCBI chr18:34,505,708...34,566,470
Ensembl chr18:34,505,751...34,566,470 		JBrowse link
G Thoc1 THO complex subunit 1 IEA KEGG rno:03040 NCBI chr18:983,824...1,019,123
Ensembl chr18:983,824...1,019,114 		JBrowse link
G Thoc2 THO complex subunit 2 IEA KEGG rno:03040 NCBI chr  X:120,634,966...120,749,569
Ensembl chr  X:120,634,968...120,749,513 		JBrowse link
G Thoc3 THO complex subunit 3 IEA KEGG rno:03040 NCBI chr17:10,143,184...10,152,375
Ensembl chr17:10,143,139...10,152,370 		JBrowse link
G Tial1 Tia1 cytotoxic granule-associated RNA binding protein-like 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr 1:183,008,358...183,045,092
Ensembl chr 1:183,009,253...183,031,637 		JBrowse link
G Tra2a transformer 2 alpha IEA KEGG rno:03040 NCBI chr 4:78,220,838...78,239,737
Ensembl chr 4:78,220,883...78,239,712 		JBrowse link
G Tra2b transformer 2 beta IEA KEGG rno:03040 NCBI chr11:78,788,880...78,807,252
Ensembl chr11:78,788,884...78,807,249 		JBrowse link
G Txnl4a thioredoxin-like 4A ISO RGD PMID:19239890 RGD:9686089 NCBI chr18:73,659,107...73,674,893
Ensembl chr18:73,659,107...73,674,893 		JBrowse link
G U2af1 U2 small nuclear RNA auxiliary factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr20:9,742,904...9,753,840
Ensembl chr20:9,742,905...9,753,832 		JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 IEA
ISO		 KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 1:68,760,911...68,779,730
Ensembl chr 1:68,760,924...68,778,492 		JBrowse link
G U2surp U2 snRNP-associated SURP domain containing IEA KEGG rno:03040 NCBI chr 8:96,018,932...96,075,795
Ensembl chr 8:96,022,957...96,075,691 		JBrowse link
G Usp39 ubiquitin specific peptidase 39 IEA KEGG rno:03040 NCBI chr 4:104,373,948...104,406,359
Ensembl chr 4:104,373,955...104,406,359 		JBrowse link
G Wbp11 WW domain binding protein 11 IEA KEGG rno:03040 NCBI chr 4:169,680,984...169,694,431
Ensembl chr 4:169,680,983...169,694,443 		JBrowse link
G Xab2 XPA binding protein 2 IEA
ISO		 KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692 		JBrowse link
G Zmat2 zinc finger, matrin type 2 IEA KEGG rno:03040 NCBI chr18:28,409,606...28,414,241
Ensembl chr18:28,398,795...28,414,747 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6092
    regulatory pathway 3867
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1738
        RNA processing pathway 294
          RNA maturation pathway 196
            mRNA maturation pathway 178
              spliceosome pathway 152
Path 2
Term Annotations click to browse term
  pathway 6092
    regulatory pathway 3867
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1738
        transcription pathway 1059
          RNA polymerase transcription pathway 387
            eukaryotic RNA polymerase transcription pathway 387
              RNA polymerase II transcription pathway 318
                lncRNA maturation pathway 152
                  spliceosome pathway 152
paths to the root