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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:spliceosome pathway
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Accession:PW:0001073 term browser browse the term
Definition:The spliceosome is a multimegadalton ribonucleoprotein complex that removes the exons to produce the mature mRNA, including several mature mRNAs from a single RNA transcript via alternative splicing. A complex assembly/disassembly pathway mediates the two chemical steps of a splicing event. lncRNAs are also frequently spliced.
Synonyms:related_synonym: KEGG:03040
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show annotations for term's descendants           Sort by:
spliceosome pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aar2 AAR2 splicing factor ISO RGD PMID:23592432 RGD:9686090 NCBI chr 3:165,517,467...165,540,260
Ensembl chr 3:165,517,556...165,548,519 		JBrowse link
G Acin1 apoptotic chromatin condensation inducer 1 IEA KEGG rno:03040 NCBI chr15:32,072,121...32,117,004
Ensembl chr15:32,072,123...32,117,166 		JBrowse link
G Alyref Aly/REF export factor IEA KEGG rno:03040 NCBI chr10:106,369,750...106,373,395
Ensembl chr10:106,369,750...106,373,395 		JBrowse link
G Aqr aquarius intron-binding spliceosomal factor IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 3:121,329,287...121,399,375
Ensembl chr 3:121,329,289...121,399,321 		JBrowse link
G Bcas2 BCAS2, pre-mRNA processing factor IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 2:193,381,000...193,388,881
Ensembl chr 2:193,380,982...193,388,878 		JBrowse link
G Bud31 BUD31 homolog IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr12:14,576,602...14,584,132
Ensembl chr12:14,576,605...14,584,039 		JBrowse link
G Ccdc12 coiled-coil domain containing 12 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 8:119,513,007...119,564,802
Ensembl chr 8:119,514,094...119,564,802 		JBrowse link
G Cdc40 cell division cycle 40 IEA KEGG rno:03040 NCBI chr20:45,855,739...45,908,239
Ensembl chr20:45,855,739...45,907,978 		JBrowse link
G Cdc5l cell division cycle 5-like IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 9:23,062,397...23,100,901
Ensembl chr 9:23,062,205...23,100,899 		JBrowse link
G Cherp calcium homeostasis endoplasmic reticulum protein IEA KEGG rno:03040 NCBI chr16:17,401,497...17,414,549
Ensembl chr16:17,401,497...17,414,549 		JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 3:153,764,718...153,807,973
Ensembl chr 6:6,894,292...6,896,635
Ensembl chr 3:6,894,292...6,896,635 		JBrowse link
G Ctnnbl1 catenin, beta like 1 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 3:166,807,899...166,968,932
Ensembl chr 3:166,807,858...166,968,931 		JBrowse link
G Cwc15 CWC15 spliceosome-associated protein IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 8:19,586,900...19,597,817
Ensembl chr 2:77,747,121...77,747,856
Ensembl chr 8:77,747,121...77,747,856 		JBrowse link
G Ddx23 DEAD-box helicase 23 IEA
ISO 		KEGG
RGD		 PMID:23454554 PMID:19239890 rno:03040, RGD:9686093, RGD:9686089 NCBI chr 7:131,676,636...131,693,917
Ensembl chr 7:131,676,636...131,689,074 		JBrowse link
G Ddx39b DExD-box helicase 39B ISO RGD PMID:23454554 RGD:9686093 NCBI chr20:3,577,200...3,589,651
Ensembl chr20:3,576,734...3,589,651 		JBrowse link
G Ddx42 DEAD-box helicase 42 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr10:91,648,719...91,680,730
Ensembl chr10:91,648,248...91,680,729 		JBrowse link
G Ddx46 DEAD-box helicase 46 IEA
ISO 		KEGG
RGD		 PMID:23454554 rno:03040, RGD:9686093 NCBI chr17:8,947,237...8,993,705
Ensembl chr17:8,947,237...8,990,247 		JBrowse link
G Ddx5 DEAD-box helicase 5 IEA KEGG rno:03040 NCBI chr10:92,224,393...92,231,928
Ensembl chr10:92,224,395...92,231,300 		JBrowse link
G Dhx15 DEAH-box helicase 15 IEA KEGG rno:03040 NCBI chr14:62,999,886...63,037,829
Ensembl chr14:62,999,877...63,037,828 		JBrowse link
G Dhx16 DEAH-box helicase 16 IEA
ISO 		KEGG
RGD		 PMID:23454554 rno:03040, RGD:9686093 NCBI chr20:2,866,804...2,879,790
Ensembl chr20:2,866,804...2,879,751 		JBrowse link
G Dhx38 DEAH-box helicase 38 IEA
ISO 		KEGG
RGD		 PMID:23454554 rno:03040, RGD:9686093 NCBI chr19:54,422,418...54,439,434
Ensembl chr19:54,422,418...54,439,423 		JBrowse link
G Dhx8 DEAH-box helicase 8 IEA
ISO 		KEGG
RGD		 PMID:23454554 rno:03040, RGD:9686093 NCBI chr10:87,167,861...87,204,426
Ensembl chr10:87,168,062...87,205,875 		JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 IEA
ISO 		KEGG
RGD		 PMID:23592432 PMID:23454554 rno:03040, RGD:9686090, RGD:9686093 NCBI chr10:88,304,992...88,352,229
Ensembl chr10:88,304,992...88,346,299 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 IEA
ISO 		KEGG
RGD		 PMID:15145352 rno:03040, RGD:9686404 NCBI chr10:105,047,567...105,057,561
Ensembl chr10:105,047,568...105,058,207 		JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 ISO RGD PMID:17537823 RGD:9686091 NCBI chr17:6,513,129...6,515,786
Ensembl chr17:6,512,629...6,516,127 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr 7:136,253,633...136,260,085
Ensembl chr 7:136,253,278...136,260,085 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 4:81,867,354...81,875,886
Ensembl chr 4:81,869,661...81,877,572 		JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 IEA KEGG rno:03040 NCBI chr 3:80,984,470...80,999,413
Ensembl chr 3:80,985,969...80,996,043 		JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:36,358,004...36,363,898
Ensembl chr10:36,358,006...36,364,307 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr15:27,253,098...27,282,779
Ensembl chr15:27,253,098...27,282,715 		JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:17537823 RGD:9686091 NCBI chr14:9,918,630...9,938,072
Ensembl chr14:9,919,739...9,938,066 		JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:35,187,412...35,203,909
Ensembl chr10:35,193,890...35,203,906 		JBrowse link
G Hnrnph3 heterogeneous nuclear ribonucleoprotein H3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr20:25,619,540...25,624,397
Ensembl chr20:25,615,577...25,625,162 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr17:6,269,302...6,280,429
Ensembl chr17:6,268,385...6,280,565 		JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:93,226,373...93,239,084
Ensembl chr 1:93,235,729...93,239,061 		JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 7:15,140,877...15,178,871
Ensembl chr 7:15,129,287...15,178,871 		JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:153,826,482...153,872,272
Ensembl chr 5:153,826,692...153,858,344 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr13:92,609,791...92,618,580
Ensembl chr13:92,605,216...92,618,612 		JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A IEA KEGG rno:03040 NCBI chr20:3,875,411...3,877,866
Ensembl chr20:3,855,780...3,877,979 		JBrowse link
G Hspa1b heat shock protein family A (Hsp70) member 1B IEA KEGG rno:03040 NCBI chr20:3,859,756...3,863,800
Ensembl chr20:3,855,780...3,877,979 		JBrowse link
G Hspa1l heat shock protein family A (Hsp70) member 1 like IEA KEGG rno:03040 NCBI chr20:3,853,496...3,860,223
Ensembl chr20:3,853,331...3,876,877 		JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 IEA KEGG rno:03040 NCBI chr 6:100,864,172...100,866,946
Ensembl chr 6:100,864,553...100,867,133 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 8:50,080,514...50,084,376
Ensembl chr 8:50,080,199...50,084,372 		JBrowse link
G Isy1 ISY1 splicing factor homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr 4:121,833,870...121,854,561
Ensembl chr 4:121,806,992...121,854,561 		JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr20:3,848,120...3,853,298
Ensembl chr20:3,848,119...3,851,891 		JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr 4:125,578,185...125,584,429
Ensembl chr 4:125,578,185...125,584,429 		JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr16:18,789,466...18,795,164
Ensembl chr16:18,789,467...18,794,886 		JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated IEA KEGG rno:03040 NCBI chr 4:87,281,260...87,284,476
Ensembl chr 4:87,281,260...87,284,476
Ensembl chr 6:87,281,260...87,284,476 		JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr19:46,002,592...46,017,152 JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr 7:9,507,373...9,509,787
Ensembl chr 7:9,507,367...9,514,115 		JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 4:48,272,128...48,277,994
Ensembl chr 4:48,272,164...48,280,162 		JBrowse link
G Magoh mago homolog, exon junction complex subunit IEA KEGG rno:03040 NCBI chr 5:127,868,044...127,875,423
Ensembl chr 5:127,868,055...127,875,384 		JBrowse link
G Magohb mago homolog B, exon junction complex subunit IEA
ISO 		KEGG
RGD		 PMID:15145352 rno:03040, RGD:9686404 NCBI chr 4:166,765,558...166,773,406
Ensembl chr 4:166,765,618...166,773,851 		JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 2:146,789,570...146,964,136
Ensembl chr 2:146,789,596...146,964,134 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 IEA KEGG rno:03040 NCBI chr 5:65,211,632...65,244,532
Ensembl chr 5:65,211,358...65,244,665 		JBrowse link
G Pcbp1 poly(rC) binding protein 1 IEA KEGG rno:03040 NCBI chr 4:120,530,100...120,532,107
Ensembl chr 4:120,529,172...120,539,111 		JBrowse link
G Phf5a PHD finger protein 5A IEA KEGG rno:03040 NCBI chr 7:115,258,609...115,265,174
Ensembl chr 7:115,258,609...115,265,174 		JBrowse link
G Pigz phosphatidylinositol glycan anchor biosynthesis, class Z IEA KEGG rno:03040 NCBI chr11:82,336,821...82,357,743
Ensembl chr11:82,336,823...82,340,684 		JBrowse link
G Plrg1 pleiotropic regulator 1 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 2:170,706,188...170,722,519
Ensembl chr 2:170,706,173...170,722,573 		JBrowse link
G Pnn pinin, desmosome associated protein ISO RGD PMID:15145352 RGD:9686404 NCBI chr 6:82,493,032...82,501,345
Ensembl chr 6:82,492,978...82,501,933 		JBrowse link
G Ppie peptidylprolyl isomerase E IEA
ISO 		KEGG
RGD		 PMID:23742842 PMID:18544344 rno:03040, RGD:9686094, RGD:9686376 NCBI chr 5:140,691,285...140,704,347
Ensembl chr 5:140,683,801...140,740,767 		JBrowse link
G Ppig peptidylprolyl isomerase G ISO RGD PMID:18544344 RGD:9686376 NCBI chr 3:74,891,846...74,923,010
Ensembl chr 3:74,891,846...74,920,750 		JBrowse link
G Ppih peptidylprolyl isomerase H IEA
ISO 		KEGG
RGD		 PMID:18544344 rno:03040, RGD:9686376 NCBI chr 5:138,191,624...138,209,625
Ensembl chr 5:138,191,624...138,209,580 		JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 IEA
ISO 		KEGG
RGD		 PMID:23742842 PMID:18544344 rno:03040, RGD:9686094, RGD:9686376 NCBI chr20:7,303,919...7,323,962
Ensembl chr20:7,303,922...7,318,781 		JBrowse link
G Ppil2 peptidylprolyl isomerase like 2 ISO RGD PMID:18544344 RGD:9686376 NCBI chr11:97,401,944...97,424,581
Ensembl chr11:97,401,963...97,430,769 		JBrowse link
G Ppil3 peptidylprolyl isomerase like 3 ISO RGD PMID:18544344 RGD:9686376 NCBI chr 9:67,460,594...67,474,325
Ensembl chr 9:67,460,595...67,474,251 		JBrowse link
G Pqbp1 polyglutamine binding protein 1 IEA KEGG rno:03040 NCBI chr  X:17,275,445...17,280,018
Ensembl chr  X:17,275,759...17,280,016 		JBrowse link
G Prpf18 pre-mRNA processing factor 18 IEA
ISO 		KEGG
RGD		 PMID:24452469 rno:03040, RGD:9686092 NCBI chr17:78,539,004...78,570,483
Ensembl chr17:78,539,839...78,600,250 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 1:216,966,104...216,977,549
Ensembl chr 1:216,966,462...216,980,506 		JBrowse link
G Prpf3 pre-mRNA processing factor 3 IEA
ISO 		KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 2:186,067,980...186,092,427
Ensembl chr 2:186,067,162...186,092,427 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 IEA
ISO 		KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 1:74,491,247...74,502,922
Ensembl chr 1:74,491,247...74,502,922 		JBrowse link
G Prpf38a pre-mRNA processing factor 38A IEA KEGG rno:03040 NCBI chr 5:128,541,166...128,552,865
Ensembl chr 5:128,541,166...128,552,865 		JBrowse link
G Prpf38b pre-mRNA processing factor 38B IEA KEGG rno:03040 NCBI chr 2:199,241,312...199,250,342
Ensembl chr 2:199,241,313...199,250,338 		JBrowse link
G Prpf4 pre-mRNA splicing tri-snRNP complex factor PRPF4 IEA
ISO 		KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 5:80,875,511...80,889,501
Ensembl chr 5:80,875,498...80,889,497 		JBrowse link
G Prpf40a pre-mRNA processing factor 40 homolog A IEA KEGG rno:03040 NCBI chr 3:58,036,779...58,098,996
Ensembl chr 3:58,038,042...58,099,363 		JBrowse link
G Prpf6 pre-mRNA processing factor 6 IEA
ISO 		KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 3:189,084,465...189,148,705
Ensembl chr 3:189,081,794...189,152,786 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 IEA
ISO 		KEGG
RGD		 PMID:23592432 rno:03040, RGD:9686090 NCBI chr10:60,829,778...60,852,887
Ensembl chr10:60,829,778...60,852,887 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr 7:10,493,199...10,502,957
Ensembl chr 7:10,493,200...10,502,957 		JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 2:210,497,610...210,558,497
Ensembl chr 2:210,497,706...210,558,291 		JBrowse link
G Puf60 poly-U binding splicing factor 60 IEA KEGG rno:03040 NCBI chr 7:109,663,490...109,674,443
Ensembl chr 7:109,663,490...109,674,724 		JBrowse link
G Qki QKI, KH domain containing RNA binding ISO RGD PMID:23385723 RGD:9686381 NCBI chr 1:52,935,357...53,047,338
Ensembl chr 1:52,935,382...53,047,337 		JBrowse link
G Rbm17 RNA binding motif protein 17 IEA KEGG rno:03040 NCBI chr17:71,846,941...71,863,834
Ensembl chr17:71,846,916...71,864,431 		JBrowse link
G Rbm22 RNA binding motif protein 22 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr18:56,283,807...56,294,615
Ensembl chr18:56,283,770...56,295,073 		JBrowse link
G Rbm25 RNA binding motif protein 25 IEA KEGG rno:03040 NCBI chr 6:108,993,119...109,050,159
Ensembl chr 6:109,002,869...109,050,159 		JBrowse link
G Rbm25l1 RNA binding motif protein 25-like 1 IEA KEGG rno:03040 NCBI chr10:10,773,494...10,776,509
Ensembl chr10:10,773,546...10,779,138 		JBrowse link
G Rbm8a RNA binding motif protein 8A IEA
ISO 		KEGG
RGD		 PMID:15145352 rno:03040, RGD:9686404 NCBI chr 2:186,854,018...186,856,802
Ensembl chr 2:186,854,036...186,856,802 		JBrowse link
G Rbmx RNA binding motif protein, X-linked IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr  X:140,342,544...140,352,121
Ensembl chr  X:140,345,571...140,352,035 		JBrowse link
G Rbmxl1 Rbmx like 1 IEA KEGG rno:03040 NCBI chr19:46,312,176...46,315,802
Ensembl chr19:46,311,280...46,327,195 		JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 ISO RGD PMID:15145352 RGD:9686404 NCBI chr10:13,950,151...13,960,396
Ensembl chr10:13,950,184...13,960,393 		JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP IEA KEGG rno:03040 NCBI chr 1:212,119,824...212,128,517
Ensembl chr 1:212,104,557...212,128,486 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein ISO RGD PMID:23592432 RGD:9686090 NCBI chr12:48,519,579...48,547,584
Ensembl chr12:48,519,849...48,547,583 		JBrowse link
G Sf1 splicing factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 1:213,090,256...213,112,688
Ensembl chr 1:213,099,260...213,113,590 		JBrowse link
G Sf3a1 splicing factor 3A subunit 1 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr14:83,254,971...83,275,720
Ensembl chr14:83,254,971...83,275,720 		JBrowse link
G Sf3a2 splicing factor 3A subunit 2 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 7:9,560,182...9,566,205
Ensembl chr 7:9,560,182...9,566,205 		JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 5:142,246,556...142,272,053
Ensembl chr 5:142,246,568...142,272,052 		JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 9:63,986,829...64,026,723
Ensembl chr 9:63,986,829...64,026,719 		JBrowse link
G Sf3b2 splicing factor 3b, subunit 2 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 1:211,999,777...212,040,686
Ensembl chr 1:211,999,778...212,020,113 		JBrowse link
G Sf3b3 splicing factor 3b, subunit 3 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr19:55,692,124...55,729,640
Ensembl chr19:55,692,126...55,729,621 		JBrowse link
G Sf3b4 splicing factor 3B subunit 4 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 2:186,421,667...186,426,419
Ensembl chr 2:186,421,636...186,426,833 		JBrowse link
G Sf3b5 splicing factor 3b, subunit 5 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 1:9,177,189...9,177,901
Ensembl chr 1:9,177,098...9,177,900 		JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:33,545,495...33,554,537
Ensembl chr 6:33,545,512...33,554,608 		JBrowse link
G Slu7 SLU7 homolog, splicing factor IEA
ISO 		KEGG
RGD		 PMID:24452469 rno:03040, RGD:9686092 NCBI chr10:28,406,908...28,425,253
Ensembl chr10:28,409,846...28,425,250 		JBrowse link
G Smndc1 survival motor neuron domain containing 1 IEA KEGG rno:03040 NCBI chr 1:262,395,034...262,406,104
Ensembl chr 1:262,386,590...262,405,707 		JBrowse link
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 ISO RGD PMID:23592432 PMID:23454554 RGD:9686090, RGD:9686093 NCBI chr 3:134,882,173...134,911,512
Ensembl chr 3:134,882,173...134,911,500 		JBrowse link
G Snrnp27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 IEA KEGG rno:03040 NCBI chr 4:120,681,054...120,691,343
Ensembl chr 4:120,679,255...120,690,656 		JBrowse link
G Snrnp40 small nuclear ribonucleoprotein U5 subunit 40 IEA KEGG rno:03040 NCBI chr 5:147,984,758...148,017,932
Ensembl chr 5:147,984,656...148,018,725 		JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 IEA
ISO 		KEGG
RGD		 PMID:23592432 rno:03040, RGD:9686090 NCBI chr 1:104,992,518...105,012,851
Ensembl chr 1:104,992,442...105,012,851 		JBrowse link
G Snrpa small nuclear ribonucleoprotein polypeptide A IEA
ISO 		KEGG
RGD		 PMID:23592432 rno:03040, RGD:9686090 NCBI chr 1:91,609,419...91,618,119
Ensembl chr 1:91,609,420...91,618,042 		JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:129,051,492...129,065,114
Ensembl chr 1:129,048,943...129,065,114 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr 3:137,824,870...137,832,479
Ensembl chr 3:137,824,683...137,832,515 		JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 IEA
ISO 		KEGG
RGD		 PMID:17537823 rno:03040, RGD:9686091 NCBI chr 3:150,852,814...150,862,364
Ensembl chr 3:150,852,790...150,863,428 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C IEA
ISO 		KEGG
RGD		 PMID:23592432 rno:03040, RGD:9686090 NCBI chr20:5,890,229...5,908,410
Ensembl chr20:5,890,229...5,908,410 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr18:1,969,351...1,980,207
Ensembl chr18:1,969,674...1,980,207 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr 1:87,926,030...87,929,259
Ensembl chr 1:87,926,048...87,933,339
Ensembl chr20:87,926,048...87,933,339 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr20:13,129,555...13,145,100
Ensembl chr20:13,109,294...13,145,763 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr13:47,596,324...47,609,390
Ensembl chr 8:129,294,325...129,294,603
Ensembl chr13:129,294,325...129,294,603 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F IEA
ISO 		KEGG
RGD		 PMID:19239890 PMID:17537823 rno:03040, RGD:9686089, RGD:9686091 NCBI chr 7:30,017,460...30,024,162
Ensembl chr 7:30,017,460...30,024,162 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 4:120,369,676...120,377,263
Ensembl chr 4:120,369,685...120,377,261
Ensembl chr  X:120,369,685...120,377,261 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 IEA
ISO 		KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 7:115,445,415...115,451,008
Ensembl chr 1:269,702,002...269,703,004
Ensembl chr 7:269,702,002...269,703,004 		JBrowse link
G Snu13l1 small nuclear ribonucleoprotein 13 like 1 IEA KEGG rno:03040 NCBI chr  X:155,666,366...155,666,788
Ensembl chr  X:155,666,381...155,666,767 		JBrowse link
G Snw1 SNW domain containing 1 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 6:112,826,374...112,850,459
Ensembl chr 6:112,826,381...112,858,180 		JBrowse link
G Srrm1 serine and arginine repetitive matrix 1 ISO RGD PMID:17537823 PMID:15145352 RGD:9686091, RGD:9686404 NCBI chr 5:152,843,167...152,875,554
Ensembl chr 5:152,843,169...152,875,436 		JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:13,320,059...13,353,337
Ensembl chr10:13,320,059...13,353,337 		JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 ISO RGD PMID:23498935 RGD:9686382 NCBI chr12:45,659,729...45,819,643
Ensembl chr12:45,660,450...45,816,475 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr10:73,335,519...73,342,549
Ensembl chr10:73,336,422...73,342,548 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 5:153,372,307...153,386,520
Ensembl chr 5:153,372,316...153,386,513 		JBrowse link
G Srsf11 serine and arginine rich splicing factor 11 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 2:249,733,464...249,760,296
Ensembl chr 2:249,733,464...249,760,499 		JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:52,402,033...52,427,839
Ensembl chr 5:52,402,618...52,427,846 		JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:102,550,962...102,554,200
Ensembl chr10:102,553,072...102,554,141 		JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr20:7,093,529...7,103,517
Ensembl chr20:7,093,565...7,103,516 		JBrowse link
G Srsf4 serine and arginine rich splicing factor 4 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 5:149,345,538...149,373,309
Ensembl chr 5:149,345,422...149,374,609 		JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 6:106,333,998...106,341,467
Ensembl chr 6:106,336,756...106,341,931 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 3:172,009,072...172,014,395
Ensembl chr 3:172,009,061...172,014,392 		JBrowse link
G Srsf7 serine and arginine rich splicing factor 7 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr 6:20,564,035...20,571,205
Ensembl chr 6:20,564,044...20,571,212 		JBrowse link
G Srsf9 serine and arginine rich splicing factor 9 ISO RGD PMID:19239890 PMID:17537823 RGD:9686089, RGD:9686091 NCBI chr12:46,938,948...46,945,213
Ensembl chr12:46,938,950...46,945,283 		JBrowse link
G Syf2 SYF2 pre-mRNA-splicing factor IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr 5:152,440,171...152,448,094
Ensembl chr 5:152,440,054...152,448,092 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein ISO RGD PMID:17537823 RGD:9686091 NCBI chr 8:98,282,358...98,315,412
Ensembl chr 8:98,282,358...98,315,386 		JBrowse link
G Tcerg1 transcription elongation regulator 1 IEA KEGG rno:03040 NCBI chr18:34,756,558...34,817,441
Ensembl chr18:34,756,725...34,817,441 		JBrowse link
G Thoc1 THO complex subunit 1 IEA KEGG rno:03040 NCBI chr18:1,253,041...1,291,956
Ensembl chr18:1,256,637...1,292,630 		JBrowse link
G Thoc2 THO complex subunit 2 IEA KEGG rno:03040 NCBI chr  X:125,500,549...125,615,139
Ensembl chr  X:125,500,549...125,615,087 		JBrowse link
G Thoc3 THO complex subunit 3 IEA KEGG rno:03040 NCBI chr17:10,148,281...10,157,472
Ensembl chr17:10,147,981...10,158,275 		JBrowse link
G Tial1 Tia1 cytotoxic granule-associated RNA binding protein-like 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr 1:192,438,794...192,475,520
Ensembl chr 1:192,441,247...192,475,674 		JBrowse link
G Tra2a transformer 2 alpha IEA KEGG rno:03040 NCBI chr 4:79,551,699...79,570,621
Ensembl chr 4:79,551,542...79,570,619 		JBrowse link
G Tra2b transformer 2 beta IEA KEGG rno:03040 NCBI chr11:92,293,403...92,311,651
Ensembl chr11:92,293,410...92,311,781 		JBrowse link
G Txnl4a thioredoxin-like 4A ISO RGD PMID:19239890 RGD:9686089 NCBI chr18:75,934,085...75,949,873
Ensembl chr18:75,933,993...75,949,873 		JBrowse link
G U2af1 U2 small nuclear RNA auxiliary factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr20:9,744,206...9,755,146
Ensembl chr20:9,744,207...9,755,094 		JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 IEA
ISO 		KEGG
RGD		 PMID:19239890 rno:03040, RGD:9686089 NCBI chr 1:77,789,752...77,807,307
Ensembl chr 1:77,789,752...77,807,413 		JBrowse link
G U2surp U2 snRNP-associated SURP domain containing IEA KEGG rno:03040 NCBI chr 8:104,898,580...104,963,642
Ensembl chr 8:104,898,425...104,955,422 		JBrowse link
G Usp39 ubiquitin specific peptidase 39 IEA KEGG rno:03040 NCBI chr 4:105,932,140...105,964,551
Ensembl chr 4:105,932,140...105,964,551 		JBrowse link
G Wbp11 WW domain binding protein 11 IEA KEGG rno:03040 NCBI chr 4:171,412,187...171,425,634
Ensembl chr 4:171,412,189...171,425,634 		JBrowse link
G Xab2 XPA binding protein 2 IEA
ISO 		KEGG
RGD		 PMID:23742842 rno:03040, RGD:9686094 NCBI chr12:6,465,569...6,477,616
Ensembl chr12:6,465,570...6,477,573 		JBrowse link
G Zmat2 zinc finger, matrin type 2 IEA KEGG rno:03040 NCBI chr18:28,683,617...28,688,252
Ensembl chr18:28,683,603...28,687,257 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6091
    regulatory pathway 3866
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1738
        RNA processing pathway 294
          RNA maturation pathway 196
            mRNA maturation pathway 178
              spliceosome pathway 152
Path 2
Term Annotations click to browse term
  pathway 6091
    regulatory pathway 3866
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1738
        transcription pathway 1059
          RNA polymerase transcription pathway 387
            eukaryotic RNA polymerase transcription pathway 387
              RNA polymerase II transcription pathway 318
                lncRNA maturation pathway 152
                  spliceosome pathway 152
paths to the root