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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:vitamin and vitamin metabolites signaling pathway
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Accession:PW:0001012 term browser browse the term
Definition:Vitamin and metabolites of vitamin in addition to representing important nutrients and aid in cellular metabolism can also, in a hormone-like manner, acts as signaling molecules.



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altered visual phototransduction pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 ISO RGD PMID:20212494 RGD:8547536 NCBI chr14:35,566,947...35,605,065
Ensembl chr14:35,567,125...35,605,065
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO RGD PMID:20212494 RGD:8547536 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
JBrowse link
G Guca1b guanylate cyclase activator 1B ISO RGD PMID:20212494 RGD:8547536 NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455
JBrowse link
G Pde6a phosphodiesterase 6A ISO RGD PMID:20212494 RGD:8547536 NCBI chr18:54,676,863...54,749,644
Ensembl chr18:54,676,863...54,748,816
JBrowse link
G Pde6b phosphodiesterase 6B ISO RGD PMID:20212494 RGD:8547536 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450
JBrowse link
G Pde6g phosphodiesterase 6G ISO RGD PMID:20212494 RGD:8547536 NCBI chr10:105,721,502...105,727,204 JBrowse link
G Rho rhodopsin ISO RGD PMID:20212494 RGD:8547536 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Sag S-antigen visual arrestin ISO RGD PMID:20212494 RGD:8547536 NCBI chr 9:88,467,797...88,508,821
Ensembl chr 9:88,469,376...88,508,820
JBrowse link
retinoic acid signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncoa1 nuclear receptor coactivator 1 ISO RGD PMID:19471584 RGD:6484676 NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664
JBrowse link
G Ncoa2 nuclear receptor coactivator 2 ISO RGD PMID:19471584 RGD:6484676 NCBI chr 5:5,835,642...6,069,693
Ensembl chr 5:5,835,706...6,067,451
JBrowse link
G Ncoa3 nuclear receptor coactivator 3 ISO RGD PMID:19471584 RGD:6484676 NCBI chr 3:154,738,566...154,821,395
Ensembl chr 3:154,738,581...154,818,594
JBrowse link
G Ncor1 nuclear receptor co-repressor 1 ISO RGD PMID:19471584 RGD:6484676 NCBI chr10:46,999,536...47,142,294
Ensembl chr10:46,999,536...47,141,032
JBrowse link
G Ncor2 nuclear receptor co-repressor 2 ISO RGD PMID:19471584 RGD:6484676 NCBI chr12:31,466,418...31,628,319
Ensembl chr12:31,466,412...31,628,319
JBrowse link
G Nrip1 nuclear receptor interacting protein 1 ISO RGD PMID:19471584 RGD:6484676 NCBI chr11:14,895,843...14,979,490
Ensembl chr11:14,895,553...14,981,761
JBrowse link
G Prame PRAME nuclear receptor transcriptional regulator ISO RGD PMID:19471584 RGD:6484676 NCBI chr  X:98,567,994...98,574,654
Ensembl chr  X:98,569,415...98,572,096
JBrowse link
G Psmc5 proteasome 26S subunit, ATPase 5 ISO RGD PMID:19471584 RGD:6484676 NCBI chr10:91,187,763...91,193,697
Ensembl chr10:91,187,743...91,213,135
JBrowse link
G Rara retinoic acid receptor, alpha ISO RGD PMID:17132850 PMID:17320364 PMID:19471584 RGD:6484674, RGD:6484731, RGD:6484676 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rarb retinoic acid receptor, beta ISO RGD PMID:17132850 PMID:17320364 PMID:19471584 RGD:6484674, RGD:6484731, RGD:6484676 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288
JBrowse link
G Rarg retinoic acid receptor, gamma ISO RGD PMID:17132850 PMID:19471584 PMID:17320364 RGD:6484674, RGD:6484676, RGD:6484731 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Rxra retinoid X receptor alpha ISO RGD PMID:17132853 PMID:17320364 RGD:6484675, RGD:6484731 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
JBrowse link
G Rxrb retinoid X receptor beta ISO RGD PMID:17132853 PMID:17320364 RGD:6484675, RGD:6484731 NCBI chr20:4,816,813...4,823,267
Ensembl chr20:4,816,815...4,828,773
JBrowse link
G Rxrg retinoid X receptor gamma ISO RGD PMID:17132853 PMID:17320364 RGD:6484675, RGD:6484731 NCBI chr13:79,743,430...79,785,173
Ensembl chr13:79,743,563...79,785,167
JBrowse link
G Trim24 tripartite motif-containing 24 ISO RGD PMID:19471584 RGD:6484676 NCBI chr 4:66,664,864...66,717,244
Ensembl chr 4:66,566,686...66,717,241
JBrowse link
visual phototransduction pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arr3 arrestin 3 ISO RGD PMID:22074925 PMID:21824527 RGD:6893539, RGD:6893556 NCBI chr  X:65,699,881...65,712,224
Ensembl chr  X:65,698,699...65,712,153
JBrowse link
G Arrb1 arrestin, beta 1 IEA KEGG rno:04744 NCBI chr 1:153,837,964...153,912,111
Ensembl chr 1:153,838,078...153,904,061
JBrowse link
G Arrb2 arrestin, beta 2 IEA KEGG rno:04744 NCBI chr10:55,146,887...55,154,854
Ensembl chr10:55,146,818...55,154,850
JBrowse link
G Calm1 calmodulin 1 IEA KEGG rno:04744 NCBI chr 6:119,487,691...119,495,759
Ensembl chr 6:119,487,621...119,498,227
JBrowse link
G Calm2 calmodulin 2 IEA KEGG rno:04744 NCBI chr 6:7,091,624...7,104,284
Ensembl chr 6:7,091,567...7,104,287
JBrowse link
G Calm3 calmodulin 3 IEA KEGG rno:04744 NCBI chr 1:77,590,668...77,597,776
Ensembl chr 1:77,589,230...77,592,207
JBrowse link
G Calml3 calmodulin-like 3 IEA KEGG rno:04744 NCBI chr17:66,419,844...66,423,083
Ensembl chr17:66,419,882...66,423,175
JBrowse link
G Calml5 calmodulin-like 5 IEA KEGG rno:04744 NCBI chr17:66,394,433...66,395,390 JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 TAS
IEA
KEGG
RGD
PMID:12087135 rno:04744, RGD:6893549 NCBI chr14:35,566,947...35,605,065
Ensembl chr14:35,567,125...35,605,065
JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 TAS RGD PMID:12087135 RGD:6893549 NCBI chr 9:39,447,532...39,497,883
Ensembl chr 9:39,448,034...39,493,183
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 TAS
IEA
KEGG
RGD
PMID:12087135 rno:04744, RGD:6893549 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
JBrowse link
G Cngb3 cyclic nucleotide gated channel subunit beta 3 ISO RGD PMID:12087135 RGD:6893549 NCBI chr 5:32,746,988...32,995,121
Ensembl chr 5:32,746,988...32,995,121
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO
IEA
KEGG
RGD
PMID:22074925 rno:04744, RGD:6893539 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 ISO
IEA
KEGG
RGD
PMID:22074925 rno:04744, RGD:6893539 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
JBrowse link
G Gnat3 G protein subunit alpha transducin 3 IEA KEGG rno:04744 NCBI chr 4:17,162,500...17,212,283
Ensembl chr 4:17,162,490...17,212,283
JBrowse link
G Gnb1 G protein subunit beta 1 ISO
IEA
KEGG
RGD
PMID:22074925 rno:04744, RGD:6893539 NCBI chr 5:166,075,508...166,142,223
Ensembl chr 5:166,075,629...166,142,124
JBrowse link
G Gnb3 G protein subunit beta 3 ISO RGD PMID:22074925 RGD:6893539 NCBI chr 4:157,639,468...157,645,171
Ensembl chr 4:157,639,469...157,645,173
JBrowse link
G Gnb5 G protein subunit beta 5 ISO RGD PMID:22074925 RGD:6893539 NCBI chr 8:76,076,227...76,104,151
Ensembl chr 8:76,073,306...76,105,069
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO
IEA
KEGG
RGD
PMID:22074925 rno:04744, RGD:6893539 NCBI chr 4:32,006,267...32,009,252
Ensembl chr 4:32,006,267...32,009,252
JBrowse link
G Gngt2 G protein subunit gamma transducin 2 ISO RGD PMID:22074925 RGD:6893539 NCBI chr10:80,776,003...80,784,235 JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO
IEA
KEGG
RGD
PMID:21903131 rno:04744, RGD:6893555 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792
JBrowse link
G Guca1a guanylate cyclase activator 1A ISO
IEA
KEGG
RGD
PMID:22074925 rno:04744, RGD:6893539 NCBI chr 9:13,587,695...13,598,566
Ensembl chr 9:13,588,525...13,598,565
JBrowse link
G Guca1b guanylate cyclase activator 1B ISO
IEA
KEGG
RGD
PMID:22074925 rno:04744, RGD:6893539 NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455
JBrowse link
G Gucy2d guanylate cyclase 2D, retinal ISO
IEA
KEGG
RGD
PMID:22074925 rno:04744, RGD:6893539 NCBI chr10:53,954,918...53,975,576
Ensembl chr10:53,959,010...53,974,067
JBrowse link
G Gucy2e guanylate cyclase 2E IEA KEGG rno:04744 NCBI chr 1:152,739,775...152,774,474
Ensembl chr 1:152,739,775...152,774,473
JBrowse link
G Gucy2f guanylate cyclase 2F ISO
IEA
KEGG
RGD
PMID:22074925 rno:04744, RGD:6893539 NCBI chr  X:105,710,356...105,808,183
Ensembl chr  X:105,710,356...105,808,183
JBrowse link
G LOC100912849 uncharacterized LOC100912849 ISO RGD PMID:22074925 RGD:6893539 NCBI chr 9:13,560,663...13,582,987
Ensembl chr 9:13,560,876...13,582,814
JBrowse link
G Opn1mw opsin 1, medium wave sensitive ISO RGD PMID:21704730 RGD:6893536 NCBI chr  X:151,905,096...151,925,322
Ensembl chr  X:151,905,096...151,925,388
JBrowse link
G Opn1sw opsin 1, short wave sensitive ISO RGD PMID:21704730 RGD:6893536 NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
JBrowse link
G Pde6a phosphodiesterase 6A ISO
IEA
KEGG
RGD
PMID:15224133 rno:04744, RGD:6893540 NCBI chr18:54,676,863...54,749,644
Ensembl chr18:54,676,863...54,748,816
JBrowse link
G Pde6b phosphodiesterase 6B ISO
IEA
KEGG
RGD
PMID:15224133 rno:04744, RGD:6893540 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450
JBrowse link
G Pde6c phosphodiesterase 6C ISO RGD PMID:15224133 RGD:6893540 NCBI chr 1:235,909,473...235,965,460
Ensembl chr 1:235,909,775...235,965,315
JBrowse link
G Pde6g phosphodiesterase 6G ISO RGD PMID:15224133 RGD:6893540 NCBI chr10:105,721,502...105,727,204 JBrowse link
G Pde6h phosphodiesterase 6H ISO RGD PMID:15224133 RGD:6893540 NCBI chr 4:169,857,793...169,872,969
Ensembl chr 4:169,857,812...169,872,969
JBrowse link
G Rcvrn recoverin ISO
IEA
KEGG
RGD
PMID:22074925 rno:04744, RGD:6893539 NCBI chr10:52,388,706...52,396,454
Ensembl chr10:52,388,706...52,396,453
JBrowse link
G Rgs9 regulator of G-protein signaling 9 ISO
IEA
KEGG
RGD
PMID:22074925 rno:04744, RGD:6893539 NCBI chr10:94,195,265...94,270,892
Ensembl chr10:94,197,054...94,270,892
JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein ISO RGD PMID:22074925 RGD:6893539 NCBI chr 1:88,249,438...88,250,151
Ensembl chr 1:88,249,438...88,250,151
JBrowse link
G Rho rhodopsin ISO
IEA
KEGG
RGD
PMID:21704730 rno:04744, RGD:6893536 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Sag S-antigen visual arrestin ISO RGD PMID:22074925 PMID:21824527 RGD:6893539, RGD:6893556 NCBI chr 9:88,467,797...88,508,821
Ensembl chr 9:88,469,376...88,508,820
JBrowse link
G Slc24a1 solute carrier family 24 member 1 ISO
IEA
KEGG
RGD
PMID:18690016 rno:04744, RGD:6893550 NCBI chr 8:65,440,842...65,466,001
Ensembl chr 8:65,440,730...65,466,001
JBrowse link
G Slc24a2 solute carrier family 24 member 2 ISO RGD PMID:18690016 RGD:6893550 NCBI chr 5:101,499,536...101,739,337
Ensembl chr 5:101,502,278...101,739,337
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6100
    signaling pathway 2644
      vitamin and vitamin metabolites signaling pathway 56
        altered vitamin and vitamin metabolites signaling pathway + 8
        vitamin A and metabolites signaling pathway + 56
        vitamin D signaling pathway 0
paths to the root