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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:T cell receptor signaling pathway
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Accession:PW:0000821 term browser browse the term
Definition:T cell receptor (TCR) signaling in developing thymocytes is important for the establishment of CD4 and CD8 lineages. Mature T cells express either CD4 or CD8 co-receptors which are essential for the interaction with peptide-bound class II or class I MHC complexes to elicit CD4 T helper (Th) or CD8 cytotoxic T lymphocyte responses, respectively. In either case, T cell-initiated signaling activates the expression of genes whose products mediate these responses.
Synonyms:related_synonym: TCR signaling;   TCR signaling pathway


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T cell receptor signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 IEA KEGG rno:04660 NCBI chr 6:137,534,810...137,555,131
Ensembl chr 6:137,535,390...137,552,610 		JBrowse link
G Akt2 AKT serine/threonine kinase 2 IEA KEGG rno:04660 NCBI chr 1:92,004,705...92,061,420
Ensembl chr 1:92,014,859...92,061,420 		JBrowse link
G Akt3 AKT serine/threonine kinase 3 IEA KEGG rno:04660 NCBI chr13:91,475,839...91,758,060
Ensembl chr13:91,475,839...91,748,020 		JBrowse link
G Bcl10 BCL10, immune signaling adaptor IEA KEGG rno:04660 NCBI chr 2:237,501,181...237,510,821
Ensembl chr 2:237,501,134...237,511,829 		JBrowse link
G Card11 caspase recruitment domain family, member 11 IEA KEGG rno:04660 NCBI chr12:18,735,088...18,872,045
Ensembl chr12:18,735,088...18,872,045 		JBrowse link
G Cbl Cbl proto-oncogene IEA KEGG rno:04660 NCBI chr 8:53,384,656...53,468,067
Ensembl chr 8:53,384,656...53,468,067 		JBrowse link
G Cblb Cbl proto-oncogene B IEA KEGG rno:04660 NCBI chr11:62,058,829...62,225,904
Ensembl chr11:62,061,653...62,225,778 		JBrowse link
G Cblc Cbl proto-oncogene C IEA KEGG rno:04660 NCBI chr 1:88,567,930...88,584,709
Ensembl chr 1:88,567,932...88,584,709 		JBrowse link
G Cd247 Cd247 molecule IEA KEGG rno:04660 NCBI chr13:80,576,264...80,651,422
Ensembl chr13:80,576,202...80,655,248 		JBrowse link
G Cd28 Cd28 molecule IEA KEGG rno:04660 NCBI chr 9:69,660,316...69,689,192
Ensembl chr 9:69,545,326...69,689,192 		JBrowse link
G Cd3d CD3 delta subunit of T-cell receptor complex IEA KEGG rno:04660 NCBI chr 8:54,184,573...54,190,112
Ensembl chr 8:54,175,155...54,196,722 		JBrowse link
G Cd3e CD3 epsilon subunit of T-cell receptor complex IEA KEGG rno:04660 NCBI chr 8:54,200,617...54,211,770
Ensembl chr 8:54,200,617...54,211,876 		JBrowse link
G Cd3g CD3 gamma subunit of T-cell receptor complex IEA KEGG rno:04660 NCBI chr 8:54,177,572...54,184,087
Ensembl chr 8:54,177,977...54,183,918 		JBrowse link
G Cd4 Cd4 molecule IEA KEGG rno:04660 NCBI chr 4:159,355,147...159,381,636
Ensembl chr 4:159,356,337...159,381,461 		JBrowse link
G Cd40lg CD40 ligand IEA KEGG rno:04660 NCBI chr  X:140,164,341...140,176,057
Ensembl chr  X:140,164,302...140,176,475 		JBrowse link
G Cd8a CD8 subunit alpha IEA KEGG rno:04660 NCBI chr 4:104,924,116...104,928,353
Ensembl chr 4:104,900,833...104,928,358 		JBrowse link
G Cd8b CD8 subunit beta IEA KEGG rno:04660 NCBI chr 4:104,870,911...104,886,838
Ensembl chr 4:104,870,893...104,886,868 		JBrowse link
G Cdc42 cell division cycle 42 IEA KEGG rno:04660 NCBI chr 5:154,838,478...154,876,629
Ensembl chr 5:154,839,631...154,876,627 		JBrowse link
G Cdk4 cyclin-dependent kinase 4 IEA KEGG rno:04660 NCBI chr 7:64,771,453...64,774,891
Ensembl chr 7:64,771,147...64,775,163 		JBrowse link
G Chp1 calcineurin-like EF-hand protein 1 IEA KEGG rno:04660 NCBI chr 3:126,989,800...127,025,071
Ensembl chr 3:126,989,579...127,042,443 		JBrowse link
G Chp1l1 calcineurin-like EF-hand protein 1 like 1 IEA KEGG rno:04660 NCBI chr 5:73,364,780...73,367,229
Ensembl chr 5:73,363,560...73,367,249 		JBrowse link
G Chp2 calcineurin-like EF hand protein 2 IEA KEGG rno:04660 NCBI chr 1:186,189,090...186,203,663
Ensembl chr 1:186,185,151...186,203,667 		JBrowse link
G Chuk component of inhibitor of nuclear factor kappa B kinase complex IEA KEGG rno:04660 NCBI chr 1:252,908,748...252,944,273
Ensembl chr 1:252,908,749...252,944,273 		JBrowse link
G Csf2 colony stimulating factor 2 IEA KEGG rno:04660 NCBI chr10:38,887,692...38,889,673
Ensembl chr10:38,887,692...38,890,031 		JBrowse link
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 IEA KEGG rno:04660 NCBI chr 9:69,812,859...69,819,959
Ensembl chr 9:69,813,265...69,819,973 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 IEA KEGG rno:04660 NCBI chr11:82,416,853...82,607,797
Ensembl chr11:82,416,853...82,607,797 		JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit IEA KEGG rno:04660 NCBI chr 6:110,852,188...110,855,054
Ensembl chr 6:110,852,190...110,855,598 		JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase IEA KEGG rno:04660 NCBI chr20:44,322,635...44,514,498
Ensembl chr20:44,322,361...44,515,479 		JBrowse link
G Grap2 GRB2-related adaptor protein 2 IEA KEGG rno:04660 NCBI chr 7:113,997,356...114,071,073
Ensembl chr 7:113,997,307...114,075,367 		JBrowse link
G Grb2 growth factor receptor bound protein 2 IEA KEGG rno:04660 NCBI chr10:101,380,354...101,448,138
Ensembl chr10:101,380,356...101,448,138 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta IEA KEGG rno:04660 NCBI chr11:76,004,502...76,154,665
Ensembl chr11:76,009,507...76,153,249 		JBrowse link
G Hras HRas proto-oncogene, GTPase IEA KEGG rno:04660 NCBI chr 1:205,712,625...205,729,406
Ensembl chr 1:205,725,975...205,729,590 		JBrowse link
G Icos inducible T-cell co-stimulator IEA KEGG rno:04660 NCBI chr 9:69,862,042...69,900,864
Ensembl chr 9:69,877,785...69,900,960 		JBrowse link
G Ifng interferon gamma IEA KEGG rno:04660 NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:55,761,736...55,793,216 		JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta IEA KEGG rno:04660 NCBI chr16:76,021,968...76,075,717
Ensembl chr16:76,022,008...76,081,911 		JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma IEA KEGG rno:04660 NCBI chr  X:157,358,279...157,397,563
Ensembl chr  X:157,367,639...157,392,757 		JBrowse link
G Il10 interleukin 10 IEA KEGG rno:04660 NCBI chr13:45,024,921...45,029,586
Ensembl chr13:45,025,087...45,029,580 		JBrowse link
G Il2 interleukin 2 IEA KEGG rno:04660 NCBI chr 2:121,932,968...121,937,672
Ensembl chr 2:121,932,968...121,937,672 		JBrowse link
G Il4 interleukin 4 IEA KEGG rno:04660 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:38,272,003...38,277,549 		JBrowse link
G Il5 interleukin 5 IEA KEGG rno:04660 NCBI chr10:38,375,132...38,378,003
Ensembl chr10:38,375,132...38,378,003 		JBrowse link
G Itk IL2-inducible T-cell kinase IEA KEGG rno:04660 NCBI chr10:31,254,667...31,316,004
Ensembl chr10:31,254,667...31,316,004 		JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit IEA KEGG rno:04660 NCBI chr 5:115,009,900...115,012,993
Ensembl chr 5:114,973,151...115,013,285 		JBrowse link
G Kras KRAS proto-oncogene, GTPase IEA KEGG rno:04660 NCBI chr 4:179,916,255...179,949,613
Ensembl chr 4:179,919,802...179,949,320 		JBrowse link
G Lat linker for activation of T cells IEA KEGG rno:04660 NCBI chr 1:190,367,111...190,372,515
Ensembl chr 1:190,367,109...190,372,153 		JBrowse link
G Lck LCK proto-oncogene, Src family tyrosine kinase IEA KEGG rno:04660 NCBI chr 5:147,172,642...147,201,267
Ensembl chr 5:147,172,642...147,201,267 		JBrowse link
G Lcp2 lymphocyte cytosolic protein 2 IEA KEGG rno:04660 NCBI chr10:19,146,846...19,193,750
Ensembl chr10:19,146,554...19,193,744 		JBrowse link
G Malt1 MALT1 paracaspase IEA KEGG rno:04660 NCBI chr18:61,212,290...61,266,272
Ensembl chr18:61,212,317...61,266,272 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IEA KEGG rno:04660 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:73,578,752...73,650,184 		JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 IEA KEGG rno:04660 NCBI chr 7:9,241,449...9,264,216
Ensembl chr 7:9,241,310...9,260,940 		JBrowse link
G Map2k7 mitogen activated protein kinase kinase 7 IEA KEGG rno:04660 NCBI chr12:7,389,032...7,398,377
Ensembl chr12:7,389,155...7,398,377 		JBrowse link
G Map3k14 mitogen-activated protein kinase kinase kinase 14 IEA KEGG rno:04660 NCBI chr10:88,665,417...88,715,669
Ensembl chr10:88,665,417...88,715,592 		JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 IEA KEGG rno:04660 NCBI chr 5:51,149,524...51,212,012
Ensembl chr 5:51,154,352...51,212,012 		JBrowse link
G Map3k8 mitogen-activated protein kinase kinase kinase 8 IEA KEGG rno:04660 NCBI chr17:58,078,175...58,098,455
Ensembl chr17:58,078,320...58,098,452 		JBrowse link
G Mapk1 mitogen activated protein kinase 1 IEA KEGG rno:04660 NCBI chr11:97,462,025...97,529,193
Ensembl chr11:97,462,025...97,527,825 		JBrowse link
G Mapk11 mitogen-activated protein kinase 11 IEA KEGG rno:04660 NCBI chr 7:122,098,120...122,105,023
Ensembl chr 7:122,098,121...122,105,038 		JBrowse link
G Mapk12 mitogen-activated protein kinase 12 IEA KEGG rno:04660 NCBI chr 7:122,085,647...122,096,307
Ensembl chr 7:122,085,913...122,096,307 		JBrowse link
G Mapk13 mitogen activated protein kinase 13 IEA KEGG rno:04660 NCBI chr20:6,836,979...6,847,197
Ensembl chr20:6,837,013...6,847,191 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 IEA KEGG rno:04660 NCBI chr20:6,751,288...6,812,294
Ensembl chr20:6,751,357...6,812,294 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 IEA KEGG rno:04660 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:190,797,185...190,803,411 		JBrowse link
G Mapk9 mitogen-activated protein kinase 9 IEA KEGG rno:04660 NCBI chr10:34,670,750...34,711,972
Ensembl chr10:34,670,756...34,712,228 		JBrowse link
G Nck1 NCK adaptor protein 1 IEA KEGG rno:04660 NCBI chr 8:109,897,723...109,958,247
Ensembl chr 8:109,897,724...109,958,247 		JBrowse link
G Nck2 NCK adaptor protein 2 IEA KEGG rno:04660 NCBI chr 9:53,206,006...53,332,417
Ensembl chr 9:53,231,381...53,332,394 		JBrowse link
G Nfat5 nuclear factor of activated T-cells 5 IEA KEGG rno:04660 NCBI chr19:52,108,982...52,196,418
Ensembl chr19:52,109,483...52,196,418 		JBrowse link
G Nfatc2 nuclear factor of activated T-cells 2 IEA KEGG rno:04660 NCBI chr 3:177,615,189...177,747,493
Ensembl chr 3:177,618,314...177,747,380 		JBrowse link
G Nfatc3 nuclear factor of activated T-cells 3 IEA KEGG rno:04660 NCBI chr19:50,870,464...50,944,992
Ensembl chr19:50,870,489...50,944,992 		JBrowse link
G Nfatc4 nuclear factor of activated T-cells 4 IEA KEGG rno:04660 NCBI chr15:33,256,912...33,284,522
Ensembl chr15:33,274,153...33,285,582 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 IEA KEGG rno:04660 NCBI chr 2:226,689,745...226,805,897
Ensembl chr 2:226,689,745...226,783,088 		JBrowse link
G Nfkbia NFKB inhibitor alpha IEA KEGG rno:04660 NCBI chr 6:78,593,844...78,597,307
Ensembl chr 6:78,593,847...78,597,072 		JBrowse link
G Nfkbib NFKB inhibitor beta IEA KEGG rno:04660 NCBI chr 1:93,173,817...93,181,387
Ensembl chr 1:93,173,820...93,326,366 		JBrowse link
G Nfkbie NFKB inhibitor epsilon IEA KEGG rno:04660 NCBI chr 9:22,941,037...22,947,872
Ensembl chr 9:22,941,040...22,947,872 		JBrowse link
G Nras NRAS proto-oncogene, GTPase IEA KEGG rno:04660 NCBI chr 2:193,271,399...193,282,023
Ensembl chr 2:193,271,430...193,278,543 		JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 IEA KEGG rno:04660 NCBI chr 1:161,522,399...161,637,623
Ensembl chr 1:161,491,847...161,637,612 		JBrowse link
G Pak2 p21 (RAC1) activated kinase 2 IEA KEGG rno:04660 NCBI chr11:82,212,896...82,273,803
Ensembl chr11:82,212,951...82,273,803 		JBrowse link
G Pak3 p21 (RAC1) activated kinase 3 IEA KEGG rno:04660 NCBI chr  X:111,912,967...112,171,037
Ensembl chr  X:111,913,059...112,165,035 		JBrowse link
G Pak4 p21 (RAC1) activated kinase 4 IEA KEGG rno:04660 NCBI chr 1:92,977,437...93,016,721
Ensembl chr 1:92,977,437...93,016,721 		JBrowse link
G Pak5 p21 (RAC1) activated kinase 5 IEA KEGG rno:04660 NCBI chr 3:143,848,404...144,156,674
Ensembl chr 3:143,849,223...144,156,640 		JBrowse link
G Pak6 p21 (RAC1) activated kinase 6 IEA KEGG rno:04660 NCBI chr 3:126,092,576...126,128,320
Ensembl chr 3:126,093,013...126,128,318 		JBrowse link
G Pdcd1 programmed cell death 1 IEA KEGG rno:04660 NCBI chr 9:101,866,124...101,879,278
Ensembl chr 9:101,866,126...101,879,270 		JBrowse link
G Pdk1 pyruvate dehydrogenase kinase 1 IEA KEGG rno:04660 NCBI chr 3:77,113,464...77,144,145
Ensembl chr 3:77,113,473...77,144,145 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha IEA KEGG rno:04660 NCBI chr 2:117,103,643...117,177,411
Ensembl chr 2:117,143,468...117,177,411 		JBrowse link
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta IEA KEGG rno:04660 NCBI chr 8:108,474,017...108,579,140
Ensembl chr 8:108,474,019...108,579,331 		JBrowse link
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta IEA KEGG rno:04660 NCBI chr 5:165,377,994...165,426,620
Ensembl chr 5:165,377,994...165,403,968 		JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 IEA KEGG rno:04660 NCBI chr 2:34,612,946...34,697,660
Ensembl chr 2:34,612,946...34,626,347 		JBrowse link
G Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 IEA KEGG rno:04660 NCBI chr16:18,699,389...18,708,045
Ensembl chr16:18,699,448...18,709,665 		JBrowse link
G Pik3r3 phosphoinositide-3-kinase regulatory subunit 3 IEA KEGG rno:04660 NCBI chr 5:134,936,790...135,009,303
Ensembl chr 5:134,934,857...135,007,762 		JBrowse link
G Pik3r5 phosphoinositide-3-kinase, regulatory subunit 5 IEA KEGG rno:04660 NCBI chr10:53,631,469...53,699,550
Ensembl chr10:53,631,476...53,699,539 		JBrowse link
G Plcg1 phospholipase C, gamma 1 IEA KEGG rno:04660 NCBI chr 3:169,805,299...169,836,040
Ensembl chr 3:169,804,846...169,836,050 		JBrowse link
G Ppp3ca protein phosphatase 3 catalytic subunit alpha IEA KEGG rno:04660 NCBI chr 2:227,839,058...228,113,560
Ensembl chr 2:227,839,062...228,113,554 		JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta IEA KEGG rno:04660 NCBI chr15:3,809,182...3,854,204
Ensembl chr15:3,809,262...3,854,203 		JBrowse link
G Ppp3cc protein phosphatase 3 catalytic subunit gamma IEA KEGG rno:04660 NCBI chr15:51,699,586...51,771,763
Ensembl chr15:51,700,255...51,771,538 		JBrowse link
G Ppp3r1 protein phosphatase 3, regulatory subunit B, alpha IEA KEGG rno:04660 NCBI chr14:95,758,333...95,808,015 JBrowse link
G Ppp3r2 protein phosphatase 3, regulatory subunit B, beta IEA KEGG rno:04660 NCBI chr 5:68,822,387...68,823,382
Ensembl chr 5:68,822,387...68,823,818 		JBrowse link
G Ptpn6 protein tyrosine phosphatase, non-receptor type 6 IEA KEGG rno:04660 NCBI chr 4:159,212,320...159,237,069
Ensembl chr 4:159,212,320...159,237,069 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C IEA KEGG rno:04660 NCBI chr13:52,147,717...52,259,810
Ensembl chr13:52,147,717...52,259,746 		JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase IEA KEGG rno:04660 NCBI chr 4:150,352,158...150,412,813
Ensembl chr 4:150,352,160...150,412,813 		JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 IEA KEGG rno:04660 NCBI chr 3:124,624,039...124,684,079
Ensembl chr 3:124,622,313...124,684,434 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit IEA KEGG rno:04660 NCBI chr 1:212,354,336...212,364,815
Ensembl chr 1:212,333,035...212,364,817 		JBrowse link
G RGD1560225 similar to nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 IEA KEGG rno:04660
G RGD1565588 similar to calcium binding protein P22 IEA KEGG rno:04660
G Rhoa ras homolog family member A IEA KEGG rno:04660 NCBI chr 8:117,870,548...117,904,303
Ensembl chr 8:117,870,270...117,904,302 		JBrowse link
G Rhoal1 ras homolog family member A like 1 IEA KEGG rno:04660 NCBI chr 4:96,581,411...96,582,783
Ensembl chr 4:96,581,383...96,582,775 		JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 IEA KEGG rno:04660 NCBI chr 6:20,286,117...20,363,350
Ensembl chr 6:20,286,117...20,363,350 		JBrowse link
G Sos2 SOS Ras/Rho guanine nucleotide exchange factor 2 IEA KEGG rno:04660 NCBI chr 6:93,778,971...93,892,161
Ensembl chr 6:93,778,971...93,892,811 		JBrowse link
G Tec tec protein tyrosine kinase IEA KEGG rno:04660 NCBI chr14:35,706,557...35,815,563
Ensembl chr14:35,691,741...35,815,585 		JBrowse link
G Tnf tumor necrosis factor IEA KEGG rno:04660 NCBI chr20:3,626,685...3,629,303
Ensembl chr20:3,626,532...3,629,303 		JBrowse link
G Vav1 vav guanine nucleotide exchange factor 1 IEA KEGG rno:04660 NCBI chr 9:2,248,856...2,295,905
Ensembl chr 9:2,248,914...2,296,922 		JBrowse link
G Vav2 vav guanine nucleotide exchange factor 2 IEA KEGG rno:04660 NCBI chr 3:30,982,754...31,152,116
Ensembl chr 3:30,982,754...31,152,116 		JBrowse link
G Vav3 vav guanine nucleotide exchange factor 3 IEA KEGG rno:04660 NCBI chr 2:199,699,861...200,042,344
Ensembl chr 2:199,700,445...200,042,343 		JBrowse link
G Zap70 zeta chain of T cell receptor associated protein kinase 70 IEA KEGG rno:04660 NCBI chr 9:46,485,605...46,507,552
Ensembl chr 9:46,485,598...46,509,062 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6091
    signaling pathway 2635
      signaling pathway pertinent to immunity 793
        signaling pathway in the adaptive immune response 209
          T cell receptor signaling pathway 109
            T cell receptor signaling pathway in CD4+ T cells 0
            T cell receptor signaling pathway in CD8+ T cells 0
Path 2
Term Annotations click to browse term
  pathway 6091
    regulatory pathway 3866
      immune response pathway 539
        adaptive immune response pathway 360
          cell-mediated immunity pathway 189
            T cell receptor signaling pathway 109
              T cell receptor signaling pathway in CD4+ T cells 0
              T cell receptor signaling pathway in CD8+ T cells 0
paths to the root