PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml ).
Term: altered glycoconjugated protein signaling pathway
Accession: PW:0000670
browse the term
Definition: A glycoconjugated protein signaling pathway that deviates from what its normal course should be.
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Dll1
delta like canonical Notch ligand 1
ISS
paper on the human protein which may be involved in disease
RGD
PMID:10079256
RGD:1304492
NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
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Dll3
delta like canonical Notch ligand 3
ISS
paper mentions mutations and diseases, deletion in mice
RGD
PMID:12141422
RGD:1304493
NCBI chr 1:85,485,875...85,493,683
Ensembl chr 1:85,485,289...85,493,685
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Hey1
hes-related family bHLH transcription factor with YRPW motif 1
ISS
RGD
PMID:12548545
RGD:1334460
NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
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Jag1
jagged canonical Notch ligand 1
ISS
RGD
PMID:10964583
RGD:1304484
NCBI chr 3:130,079,361...130,114,781
Ensembl chr 3:130,079,361...130,114,770
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Jag2
jagged canonical Notch ligand 2
ISS
RGD
PMID:10079256
RGD:1304492
NCBI chr 6:137,711,144...137,733,331
Ensembl chr 6:137,711,155...137,733,026
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Notch1
notch receptor 1
ISS
RGD
PMID:11900468
RGD:724389
NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
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Notch4
notch receptor 4
ISS
RGD
PMID:10964583
RGD:1304484
NCBI chr20:4,329,794...4,353,868
Ensembl chr20:4,329,811...4,353,785
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Numb
NUMB, endocytic adaptor protein
ISS
RGD
PMID:15492044
RGD:1334451
NCBI chr 6:107,279,917...107,325,345
Ensembl chr 6:107,279,920...107,325,345
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Pofut1
protein O-fucosyltransferase 1
ISS
RGD
PMID:14570055
RGD:1334453
NCBI chr 3:148,722,864...148,749,743
Ensembl chr 3:148,722,955...148,747,208
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test
test1
IDA ISS
RGD
PMID:1295745 , PMID:1295745
RGD:69906 , RGD:69906
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Hey1
hes-related family bHLH transcription factor with YRPW motif 1
ISS
RGD
PMID:12548545
RGD:1334460
NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
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Numb
NUMB, endocytic adaptor protein
ISS
In humans, loss of Numb regulation over Notch is involved in breast cancer.
RGD
PMID:15492044
RGD:1334451
NCBI chr 6:107,279,917...107,325,345
Ensembl chr 6:107,279,920...107,325,345
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Pofut1
protein O-fucosyltransferase 1
ISS
RGD
PMID:14570055
RGD:1334453
NCBI chr 3:148,722,864...148,749,743
Ensembl chr 3:148,722,955...148,747,208
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Psen2
presenilin 2
ISO
C. elegans transgenics expressing human wild-type and mutant PSEN2
RGD
PMID:16474849
RGD:2302525
NCBI chr13:98,513,600...98,539,347
Ensembl chr13:98,513,570...98,530,724
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Dll3
delta like canonical Notch ligand 3
ISS
RGD
PMID:12141422
RGD:1304493
NCBI chr 1:85,485,875...85,493,683
Ensembl chr 1:85,485,289...85,493,685
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Jag1
jagged canonical Notch ligand 1
ISS
RGD
PMID:15057910
RGD:1334443
NCBI chr 3:130,079,361...130,114,781
Ensembl chr 3:130,079,361...130,114,770
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Notch1
notch receptor 1
ISS
RGD
PMID:15472075
RGD:1334450
NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
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Notch3
notch receptor 3
ISS
RGD
PMID:14667809
RGD:1334442
NCBI chr 7:14,138,495...14,189,688
Ensembl chr 7:14,138,495...14,189,688
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Dab1
DAB adaptor protein 1
TAS
RGD
PMID:12670697
RGD:727518
NCBI chr 5:123,154,360...124,279,170
Ensembl chr 5:123,905,166...124,280,115
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Fyn
FYN proto-oncogene, Src family tyrosine kinase
ISO
RGD
PMID:12778121
RGD:2324970
NCBI chr20:44,436,354...44,630,316
Ensembl chr20:44,436,403...44,630,317
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Itga3
integrin subunit alpha 3
ISO
RGD
PMID:15583703
RGD:2325851
NCBI chr10:82,855,841...82,887,755
Ensembl chr10:82,855,613...82,887,497
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Itgb1
integrin subunit beta 1
ISO
RGD
PMID:15583703
RGD:2325851
NCBI chr19:61,677,512...61,725,537
Ensembl chr19:61,677,542...61,725,535
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Lrp8
LDL receptor related protein 8
ISO
RGD
PMID:19846452
RGD:2324974
NCBI chr 5:127,404,348...127,476,636
Ensembl chr 5:127,404,450...127,476,641
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Pafah1b1
platelet-activating factor acetylhydrolase 1b, regulatory subunit 1
ISO
RGD
PMID:17330141
RGD:4107040
NCBI chr10:61,456,144...61,577,412
Ensembl chr10:61,456,145...61,577,412
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Pafah1b2
platelet-activating factor acetylhydrolase 1b, catalytic subunit 2
ISO
RGD
PMID:17330141
RGD:4107040
NCBI chr 8:50,256,969...50,310,043
Ensembl chr 8:50,259,248...50,277,797
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Pafah1b3
platelet-activating factor acetylhydrolase 1b, catalytic subunit 3
ISO
RGD
PMID:17330141
RGD:4107040
NCBI chr 1:82,163,733...82,166,259
Ensembl chr 1:82,163,595...82,166,363
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Reln
reelin
TAS
RGD
PMID:12670697
RGD:727518
NCBI chr 4:9,347,533...9,774,257
Ensembl chr 4:9,347,528...9,773,670
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Src
SRC proto-oncogene, non-receptor tyrosine kinase
ISO
RGD
PMID:18237558
RGD:2325284
NCBI chr 3:153,547,807...153,595,643
Ensembl chr 3:153,580,861...153,595,642
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Vldlr
very low density lipoprotein receptor
ISS
RGD
PMID:12764038
RGD:1358468
NCBI chr 1:245,236,819...245,273,688
Ensembl chr 1:245,237,736...245,269,205
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Apc
APC regulator of WNT signaling pathway
ISO
RGD
PMID:18432252
RGD:2293188
NCBI chr18:27,011,710...27,106,323
Ensembl chr18:27,047,382...27,105,531
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Axin1
axin 1
ISO
RGD
PMID:18432252
RGD:2293188
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Axin2
axin 2
ISO
RGD
PMID:18432252
RGD:2293188
NCBI chr10:97,212,483...97,238,824
Ensembl chr10:97,212,432...97,239,642
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Ctnnb1
catenin beta 1
ISO
RGD
PMID:18432252 , PMID:19078924
RGD:2293188 , RGD:4143515
NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
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Lrp5
LDL receptor related protein 5
ISO
RGD
PMID:18432252
RGD:2293188
NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
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Tcf7l2
transcription factor 7 like 2
ISO
RGD
PMID:18772397
RGD:5490966
NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514 Ensembl chr 1:276,659,542...276,730,514
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Wnt9a
Wnt family member 9A
ISO
RGD
PMID:18772397
RGD:5490966
NCBI chr10:45,659,045...45,686,103
Ensembl chr10:45,659,143...45,681,393
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all