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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:glycoconjugated protein signaling pathway
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Accession:PW:0000655 term browser browse the term
Definition:Those signaling pathways mediated or initiated by oligosaccharide or polysaccharide linked proteins.


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altered Notch signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 ISO RGD PMID:12548545 RGD:1334460 NCBI chrNW_004955444:1,498,444...1,502,099
Ensembl chrNW_004955444:1,498,675...1,500,945
JBrowse link
G Numb NUMB endocytic adaptor protein ISO RGD PMID:15492044 RGD:1334451 NCBI chrNW_004955523:2,025,652...2,076,037 JBrowse link
altered Notch signaling pathway involving promoters term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 ISO RGD PMID:12548545 RGD:1334460 NCBI chrNW_004955444:1,498,444...1,502,099
Ensembl chrNW_004955444:1,498,675...1,500,945
JBrowse link
altered Notch signaling pathway involving the macromolecules modifying the main players term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Numb NUMB endocytic adaptor protein ISO RGD PMID:15492044 RGD:1334451 NCBI chrNW_004955523:2,025,652...2,076,037 JBrowse link
G Psen2 presenilin 2 ISO C. elegans transgenics expressing wild-type and mutant PSEN2 RGD PMID:16474849 RGD:2302525 NCBI chrNW_004955406:5,727,367...5,748,798
Ensembl chrNW_004955406:5,727,367...5,752,234
JBrowse link
altered Notch signaling pathway involving the main players term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll3 delta like canonical Notch ligand 3 ISO Mutations in the gene have been associated with Spondylocostal dysostosis RGD PMID:12141422 RGD:1304493 NCBI chrNW_004955468:70,714...78,831
Ensembl chrNW_004955468:71,004...78,827
JBrowse link
G Jag1 jagged canonical Notch ligand 1 ISO RGD PMID:15057910 RGD:1334443 NCBI chrNW_004955415:20,490,414...20,526,068
Ensembl chrNW_004955415:20,490,414...20,527,917
JBrowse link
G Notch1 notch receptor 1 ISO Mutations in the dimerization and/or PEST domain have been associated with human acute T-lymphoblastic leukemias RGD PMID:15472075 RGD:1334450 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259
JBrowse link
G Notch3 notch receptor 3 ISO Mutations are predominantly found in the EGF repeats and clustered within the first five RGD PMID:9388399 RGD:1334441 NCBI chrNW_004955495:8,012,370...8,048,616
Ensembl chrNW_004955495:8,012,502...8,047,710
JBrowse link
altered Reelin signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 DAB adaptor protein 1 ISO RGD PMID:12670697 PMID:12764038 PMID:16266828 RGD:1358468 RGD:2324967 RGD:727518 NCBI chrNW_004955464:2,325,529...2,721,497
Ensembl chrNW_004955464:2,455,346...2,724,358
JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase ISO RGD PMID:12778121 RGD:2324970 NCBI chrNW_004955411:36,403,156...36,597,660
Ensembl chrNW_004955411:36,401,842...36,512,054
JBrowse link
G Itga3 integrin subunit alpha 3 ISO RGD PMID:15583703 RGD:2325851 NCBI chrNW_004955451:11,563,120...11,590,119
Ensembl chrNW_004955451:11,561,704...11,589,727
JBrowse link
G Itgb1 integrin subunit beta 1 ISO RGD PMID:15583703 RGD:2325851 NCBI chrNW_004955462:4,454,809...4,483,227
Ensembl chrNW_004955462:4,454,809...4,484,842
JBrowse link
G Lrp8 LDL receptor related protein 8 ISO RGD PMID:19846452 RGD:2324974 NCBI chrNW_004955464:5,837,002...5,912,178
Ensembl chrNW_004955464:5,837,009...5,911,672
JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 ISO RGD PMID:17330141 RGD:4107040 NCBI chrNW_004955481:608,897...686,454
Ensembl chrNW_004955481:608,897...686,452
JBrowse link
G Pafah1b2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 ISO RGD PMID:17330141 RGD:4107040 NCBI chrNW_004955412:18,471,621...18,494,082
Ensembl chrNW_004955412:18,474,199...18,494,082
JBrowse link
G Pafah1b3 platelet activating factor acetylhydrolase 1b catalytic subunit 3 ISO RGD PMID:17330141 RGD:4107040 NCBI chrNW_004955555:609,925...612,701
Ensembl chrNW_004955555:609,925...612,701
JBrowse link
G Reln reelin ISO RGD PMID:12670697 PMID:12764038 RGD:1358468 RGD:727518 NCBI chrNW_004955410:8,424,439...8,863,966
Ensembl chrNW_004955410:8,424,394...8,863,969
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO RGD PMID:18237558 RGD:2325284 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695
JBrowse link
G Vldlr very low density lipoprotein receptor ISO RGD PMID:12764038 RGD:1358468 NCBI chrNW_004955434:7,013,092...7,050,103
Ensembl chrNW_004955434:7,013,092...7,050,103
JBrowse link
altered Wnt signaling, canonical pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO RGD PMID:18432252 RGD:2293188 NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Axin1 axin 1 ISO RGD PMID:18432252 RGD:2293188 NCBI chrNW_004955442:16,845,728...16,898,301
Ensembl chrNW_004955442:16,843,152...16,898,430
JBrowse link
G Axin2 axin 2 ISO RGD PMID:18432252 RGD:2293188 NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225
JBrowse link
G Ctnnb1 catenin beta 1 ISO RGD PMID:18432252 PMID:19078924 RGD:2293188 RGD:4143515 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO RGD PMID:18432252 RGD:2293188 NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO RGD PMID:18772397 RGD:5490966 NCBI chrNW_004955431:18,020,309...18,207,926
Ensembl chrNW_004955431:18,020,409...18,209,134
JBrowse link
G Wnt9a Wnt family member 9A ISO RGD PMID:18772397 RGD:5490966 NCBI chrNW_004955581:422,028...438,321
Ensembl chrNW_004955581:421,451...438,380
JBrowse link
glypican signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein ISO PID PID:200026 NCBI chrNW_004955407:25,725,259...25,973,582
Ensembl chrNW_004955407:25,722,849...25,974,268
JBrowse link
G Blk BLK proto-oncogene, Src family tyrosine kinase ISO PID PID:200026 NCBI chrNW_004955403:52,825,397...52,874,007
Ensembl chrNW_004955403:52,832,604...52,874,264
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO PID PID:200225 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303
JBrowse link
G Fgf2 fibroblast growth factor 2 ISO PID PID:200026 NCBI chrNW_004955428:17,840,554...17,894,779
Ensembl chrNW_004955428:17,840,628...17,894,773
JBrowse link
G Fgf7 fibroblast growth factor 7 ISO PID PID:200225 NCBI chrNW_004955409:4,633,542...4,686,768
Ensembl chrNW_004955409:4,632,858...4,686,860
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 ISO PID PID:200026 NCBI chrNW_004955463:14,013,247...14,064,354
Ensembl chrNW_004955463:14,013,247...14,064,111
JBrowse link
G Fgr FGR proto-oncogene, Src family tyrosine kinase ISO PID PID:200026 NCBI chrNW_004955452:6,840,274...6,863,460
Ensembl chrNW_004955452:6,841,802...6,863,542
JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 ISO PID PID:200026 NCBI chrNW_004955497:7,653,309...7,831,737
Ensembl chrNW_004955497:7,653,248...7,831,472
JBrowse link
G Furin furin, paired basic amino acid cleaving enzyme ISO PID PID:200225 NCBI chrNW_004955416:14,915,031...14,947,634
Ensembl chrNW_004955416:14,936,546...14,949,252
JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase ISO PID PID:200026 NCBI chrNW_004955411:36,403,156...36,597,660
Ensembl chrNW_004955411:36,401,842...36,512,054
JBrowse link
G Gpc1 glypican 1 ISO PID PID:200026 NCBI chrNW_004955542:947,556...968,295
Ensembl chrNW_004955542:947,556...968,295
JBrowse link
G Gpc2 glypican 2 ISO PID PID:200126 NCBI chrNW_004955573:630,859...637,296
Ensembl chrNW_004955573:630,859...637,296
JBrowse link
G Gpc3 glypican 3 ISO PID PID:200225 NCBI chrNW_004955473:969,627...1,431,706
Ensembl chrNW_004955473:969,800...1,431,483
JBrowse link
G Hck HCK proto-oncogene, Src family tyrosine kinase ISO PID PID:200026 NCBI chrNW_004955422:28,934,512...28,986,998
Ensembl chrNW_004955422:28,932,653...28,986,998
JBrowse link
G Lama1 laminin subunit alpha 1 ISO PID PID:200026 NCBI chrNW_004955402:4,281,415...4,397,158
Ensembl chrNW_004955402:4,285,492...4,400,348
JBrowse link
G Lck LCK proto-oncogene, Src family tyrosine kinase ISO PID PID:200026 NCBI chrNW_004955452:10,608,317...10,632,310
Ensembl chrNW_004955452:10,608,318...10,632,310
JBrowse link
G Lyn LYN proto-oncogene, Src family tyrosine kinase ISO PID PID:200026 NCBI chrNW_004955454:15,025,967...15,111,142
Ensembl chrNW_004955454:15,035,979...15,111,142
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO PID PID:200225 NCBI chrNW_004955556:1,593,552...1,705,543
Ensembl chrNW_004955556:1,593,494...1,665,784
JBrowse link
G Mapk9 mitogen-activated protein kinase 9 ISO PID PID:200225 NCBI chrNW_004955408:391,094...430,638
Ensembl chrNW_004955408:391,094...430,981
JBrowse link
G Mdk midkine ISO PID PID:200126 NCBI chrNW_004955422:1,655,351...1,657,026
Ensembl chrNW_004955422:1,655,358...1,657,044
JBrowse link
G Nrg1 neuregulin 1 ISO PID PID:200026 NCBI chrNW_004955463:8,009,436...9,037,116
Ensembl chrNW_004955463:8,009,530...9,037,116
JBrowse link
G Prnp prion protein ISO PID PID:200026 NCBI chrNW_004955415:15,442,313...15,454,644
Ensembl chrNW_004955415:15,442,313...15,454,644
JBrowse link
G Ptch1 patched 1 ISO PID PID:200225 NCBI chrNW_004955422:22,362,330...22,418,062
Ensembl chrNW_004955422:22,362,221...22,427,622
JBrowse link
G Serpinc1 serpin family C member 1 ISO PID PID:200026 NCBI chrNW_004955406:14,024,183...14,036,206
Ensembl chrNW_004955406:14,024,313...14,035,948
JBrowse link
G Shh sonic hedgehog signaling molecule ISO PID PID:200225 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Slit2 slit guidance ligand 2 ISO PID PID:200026 NCBI chrNW_004955480:3,982,977...4,314,160
Ensembl chrNW_004955480:3,984,586...4,313,908
JBrowse link
G Smad2 SMAD family member 2 ISO PID PID:200026 NCBI chrNW_004955402:33,131,760...33,217,144
Ensembl chrNW_004955402:33,136,778...33,216,844
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO PID PID:200026 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 ISO PID PID:200026 NCBI chrNW_004955420:25,476,975...25,479,969
Ensembl chrNW_004955420:25,477,122...25,479,969
JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO PID PID:200026 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
JBrowse link
G Tgfb2 transforming growth factor beta 2 ISO PID PID:200026 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248
JBrowse link
G Tgfb3 transforming growth factor beta 3 ISO PID PID:200026 NCBI chrNW_004955438:33,129...55,180
Ensembl chrNW_004955438:29,415...55,180
JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 ISO PID PID:200026 NCBI chrNW_004955419:26,490,899...26,546,349
Ensembl chrNW_004955419:26,490,899...26,547,017
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 ISO PID PID:200026 NCBI chrNW_004955430:21,919,338...21,999,688
Ensembl chrNW_004955430:21,932,553...22,001,837
JBrowse link
G Vegfa vascular endothelial growth factor A ISO PID PID:200026 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
G Yes1 YES proto-oncogene 1, Src family tyrosine kinase ISO PID PID:200026 NCBI chrNW_004955402:9,199,704...9,255,183
Ensembl chrNW_004955402:9,226,295...9,256,044
JBrowse link
Notch signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam10 ADAM metallopeptidase domain 10 ISO PID
RGD
PMID:12354787 PMID:17761886 PID:200015 RGD:1300252 RGD:2302204 NCBI chrNW_004955450:15,853,372...15,927,966
Ensembl chrNW_004955450:15,853,366...15,928,200
JBrowse link
G Adam12 ADAM metallopeptidase domain 12 ISO PID PID:200015 NCBI chrNW_004955477:3,917,637...4,263,529
Ensembl chrNW_004955477:3,922,644...4,263,296
JBrowse link
G Adam17 ADAM metallopeptidase domain 17 ISO RGD PMID:17761886 RGD:2302204 NCBI chrNW_004955487:5,180,241...5,218,298
Ensembl chrNW_004955487:5,180,252...5,218,216
JBrowse link
G Aph1a aph-1 homolog A, gamma-secretase subunit ISO PID
RGD
PMID:17761886 PID:200015 RGD:2302204 NCBI chrNW_004955413:506,297...509,787
Ensembl chrNW_004955413:506,297...509,787
JBrowse link
G Aph1b aph-1 homolog B, gamma-secretase subunit ISO PID
RGD
PMID:17761886 PID:200015 RGD:2302204 NCBI chrNW_004955450:12,000,682...12,022,183
Ensembl chrNW_004955450:12,000,424...12,022,071
JBrowse link
G Cbl Cbl proto-oncogene ISO PID PID:200015 NCBI chrNW_004955412:20,307,011...20,388,539
Ensembl chrNW_004955412:20,307,011...20,388,539
JBrowse link
G Ccnd1 cyclin D1 ISO PID PID:200015 NCBI chrNW_004955422:16,449,921...16,462,676
Ensembl chrNW_004955422:16,448,770...16,463,300
JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A ISO PID PID:200015 NCBI chrNW_004955437:6,254,638...6,261,278
Ensembl chrNW_004955437:6,254,309...6,261,479
JBrowse link
G Cntn1 contactin 1 ISO PID PID:200015 NCBI chrNW_004955500:154,704...540,546
Ensembl chrNW_004955500:245,896...540,600
JBrowse link
G Cntn6 contactin 6 ISO PID PID:200015 NCBI chrNW_004955421:11,797,270...12,111,353
Ensembl chrNW_004955421:11,797,071...12,111,490
JBrowse link
G Ctbp1 C-terminal binding protein 1 ISO PID PID:200015 NCBI chrNW_004955514:630,168...652,817
Ensembl chrNW_004955514:626,645...652,817
JBrowse link
G Cul1 cullin 1 ISO PID PID:200015 NCBI chrNW_004955491:4,165,400...4,212,483
Ensembl chrNW_004955491:4,165,561...4,212,054
JBrowse link
G Dlk1 delta like non-canonical Notch ligand 1 ISO PID PID:200015 NCBI chrNW_004955627:37,886...43,730
Ensembl chrNW_004955627:38,128...43,728
JBrowse link
G Dll1 delta like canonical Notch ligand 1 ISO PID
RGD
PMID:14743446 PMID:17761886 PID:200015 RGD:1304491 RGD:2302204 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604
JBrowse link
G Dll3 delta like canonical Notch ligand 3 ISO PID
RGD
PMID:14743446 PMID:17761886 PID:200015 RGD:1304491 RGD:2302204 NCBI chrNW_004955468:70,714...78,831
Ensembl chrNW_004955468:71,004...78,827
JBrowse link
G Dll4 delta like canonical Notch ligand 4 ISO PID
RGD
PMID:17761886 PID:200015 RGD:2302204 NCBI chrNW_004955416:7,807,049...7,816,346
Ensembl chrNW_004955416:7,807,049...7,817,420
JBrowse link
G Dner delta/notch like EGF repeat containing ISO PID PID:200015 NCBI chrNW_004955453:5,307,256...5,615,550
Ensembl chrNW_004955453:5,307,256...5,615,609
JBrowse link
G Dnm1 dynamin 1 ISO PID PID:200015 NCBI chrNW_004955570:752,335...781,770
Ensembl chrNW_004955570:752,335...781,770
JBrowse link
G Dtx1 deltex E3 ubiquitin ligase 1 ISO PID PID:200015 NCBI chrNW_004955482:9,416,456...9,447,265
Ensembl chrNW_004955482:9,417,116...9,446,239
JBrowse link
G Eno1 enolase 1 ISO PID PID:200015 NCBI chrNW_004955486:4,275,371...4,287,152
Ensembl chrNW_004955486:4,274,238...4,289,809
JBrowse link
G Ep300 E1A binding protein p300 ISO PID PID:200015 NCBI chrNW_004955413:26,647,553...26,727,875
Ensembl chrNW_004955413:26,648,339...26,727,933
JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 ISO PID PID:200015 NCBI chrNW_004955464:7,569,570...7,688,098
Ensembl chrNW_004955464:7,569,566...7,688,098
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 ISO PID PID:200015 NCBI chrNW_004955471:6,852,459...7,026,590
Ensembl chrNW_004955471:6,848,101...6,955,881
JBrowse link
G Furin furin, paired basic amino acid cleaving enzyme ISO PID PID:200015 NCBI chrNW_004955416:14,915,031...14,947,634
Ensembl chrNW_004955416:14,936,546...14,949,252
JBrowse link
G Gata3 GATA binding protein 3 ISO PID PID:200015 NCBI chrNW_004955421:24,448,446...24,477,885
Ensembl chrNW_004955421:24,457,496...24,478,744
JBrowse link
G Hdac1 histone deacetylase 1 ISO PID PID:200015 NCBI chrNW_004955452:10,636,366...10,668,873
Ensembl chrNW_004955452:10,636,366...10,670,864
JBrowse link
G Hes1 hes family bHLH transcription factor 1 ISO RGD PMID:17586813 RGD:5135539 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447
JBrowse link
G Hes5 hes family bHLH transcription factor 5 ISO RGD PMID:17586813 RGD:5135539 NCBI chrNW_004955486:8,700,212...8,701,581
Ensembl chrNW_004955486:8,700,162...8,701,748
JBrowse link
G Hes7 hes family bHLH transcription factor 7 ISO RGD PMID:17586813 RGD:5135539 NCBI chrNW_004955467:8,837,895...8,841,062
Ensembl chrNW_004955467:8,837,886...8,841,739
JBrowse link
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 ISO RGD PMID:11741889 PMID:12548545 PMID:17586813 RGD:1334460 RGD:5135539 RGD:70528 NCBI chrNW_004955444:1,498,444...1,502,099
Ensembl chrNW_004955444:1,498,675...1,500,945
JBrowse link
G Hey2 hes related family bHLH transcription factor with YRPW motif 2 ISO RGD PMID:11741889 PMID:17586813 RGD:5135539 RGD:70528 NCBI chrNW_004955436:7,060,930...7,070,610
Ensembl chrNW_004955436:7,060,930...7,070,030
JBrowse link
G Heyl hes related family bHLH transcription factor with YRPW motif like ISO RGD PMID:17586813 RGD:5135539 NCBI chrNW_004955452:17,137,066...17,152,714
Ensembl chrNW_004955452:17,134,770...17,152,924
JBrowse link
G Il4 interleukin 4 ISO PID PID:200015 NCBI chrNW_004955408:4,058,052...4,065,999 JBrowse link
G Itch itchy E3 ubiquitin protein ligase ISO PID PID:200015 NCBI chrNW_004955422:26,810,829...26,918,517
Ensembl chrNW_004955422:26,809,972...26,887,123
JBrowse link
G Jag1 jagged canonical Notch ligand 1 ISO PID
RGD
PMID:7697721 PMID:15057910 PMID:17761886 PID:200015 RGD:1334443 RGD:2302204 RGD:69863 NCBI chrNW_004955415:20,490,414...20,526,068
Ensembl chrNW_004955415:20,490,414...20,527,917
JBrowse link
G Jag2 jagged canonical Notch ligand 2 ISO PID
RGD
PMID:8948600 PMID:17761886 PID:200015 RGD:2302204 RGD:69864 NCBI chrNW_004955538:3,421,685...3,433,829
Ensembl chrNW_004955538:3,421,685...3,433,842
JBrowse link
G Kdm1a lysine demethylase 1A ISO PID PID:200015 NCBI chrNW_004955452:3,044,042...3,104,650
Ensembl chrNW_004955452:3,044,264...3,104,418
JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO RGD PMID:12167404 PMID:17761886 RGD:2302204 RGD:727405 NCBI chrNW_004955460:12,773,975...12,784,512
Ensembl chrNW_004955460:12,773,975...12,784,512
JBrowse link
G Lnx1 ligand of numb-protein X 1 ISO PID PID:200015 NCBI chrNW_004955447:17,154,026...17,265,067
Ensembl chrNW_004955447:17,155,236...17,265,067
JBrowse link
G Maml1 mastermind like transcriptional coactivator 1 ISO PID
RGD
PMID:17761886 PID:200015 RGD:2302204 NCBI chrNW_004955408:802,277...850,218
Ensembl chrNW_004955408:804,535...813,475
JBrowse link
G Maml2 mastermind like transcriptional coactivator 2 ISO PID
RGD
PMID:17761886 PID:200015 RGD:2302204 NCBI chrNW_004955412:849,367...1,038,341
Ensembl chrNW_004955412:847,977...952,259
JBrowse link
G Maml3 mastermind like transcriptional coactivator 3 ISO RGD PMID:17761886 RGD:2302204 NCBI chrNW_004955428:3,602,255...4,009,994
Ensembl chrNW_004955428:3,603,101...4,008,781
JBrowse link
G Mark2 microtubule affinity regulating kinase 2 ISO PID PID:200015 NCBI chrNW_004955422:21,112,162...21,176,506
Ensembl chrNW_004955422:21,109,940...21,176,500
JBrowse link
G Mfap2 microfibril associated protein 2 ISO PID PID:200015 NCBI chrNW_004955527:1,826,528...1,832,058
Ensembl chrNW_004955527:1,826,528...1,832,052
JBrowse link
G Mfap5 microfibril associated protein 5 ISO PID PID:200015 NCBI chrNW_004955413:6,401,429...6,415,177
Ensembl chrNW_004955413:6,402,293...6,413,992
JBrowse link
G Mfng MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO RGD PMID:17761886 RGD:2302204 NCBI chrNW_004955413:23,901,987...23,917,720
Ensembl chrNW_004955413:23,902,707...23,917,542
JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 ISO PID
RGD
PMID:12530964 PID:200015 RGD:1334454 NCBI chrNW_004955402:10,392,308...10,502,576
Ensembl chrNW_004955402:10,392,308...10,502,576
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO PID PID:200015 NCBI chrNW_004955461:2,714,022...2,718,872
Ensembl chrNW_004955461:2,714,022...2,718,982
JBrowse link
G Mycbp MYC binding protein ISO PID PID:200015 NCBI chrNW_004955452:16,490,066...16,496,989 JBrowse link
G Ncor1 nuclear receptor corepressor 1 ISO PID PID:200015 NCBI chrNW_004955467:1,408,292...1,568,539
Ensembl chrNW_004955467:1,409,281...1,546,842
JBrowse link
G Ncor2 nuclear receptor corepressor 2 ISO PID PID:200015 NCBI chrNW_004955482:4,927,482...5,031,848
Ensembl chrNW_004955482:4,942,221...5,031,904
JBrowse link
G Ncstn nicastrin ISO PID
RGD
PMID:12736250 PMID:17761886 PID:200015 RGD:2302204 RGD:724403 NCBI chrNW_004955468:12,111,078...12,126,404
Ensembl chrNW_004955468:12,111,078...12,127,033
JBrowse link
G Neurl1 neuralized E3 ubiquitin protein ligase 1 ISO PID
RGD
PMID:14986688 PID:200015 RGD:1334462 NCBI chrNW_004955485:7,015,969...7,046,089 JBrowse link
G Neurl2 neuralized E3 ubiquitin protein ligase 2 ISO RGD PMID:14986688 RGD:1334462 NCBI chrNW_004955445:11,405,195...11,407,819
Ensembl chrNW_004955445:11,405,195...11,407,819
JBrowse link
G Notch1 notch receptor 1 ISO PID
RGD
PMID:11900468 PMID:12853432 PMID:15057910 PMID:15247148 PMID:17761886 PID:200015 RGD:1334443 RGD:1358543 RGD:2302204 RGD:2306423 RGD:724389 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259
JBrowse link
G Notch2 notch receptor 2 ISO PID
RGD
PMID:1295745 PMID:17761886 PID:200015 RGD:2302204 RGD:69906 NCBI chrNW_004955568:1,660,357...1,812,285
Ensembl chrNW_004955568:1,660,731...1,809,173
JBrowse link
G Notch3 notch receptor 3 ISO RGD
PID
PMID:11971902 PMID:15247148 PMID:17761886 PID:200015 RGD:2302204 RGD:2306423 RGD:625426 NCBI chrNW_004955495:8,012,370...8,048,616
Ensembl chrNW_004955495:8,012,502...8,047,710
JBrowse link
G Notch4 notch receptor 4 ISO RGD
PID
PMID:10964583 PMID:17761886 PID:200015 RGD:1304484 RGD:2302204 NCBI chrNW_004955437:658,076...679,338 JBrowse link
G Numb NUMB endocytic adaptor protein ISO PID
RGD
PMID:12500307 PMID:15492044 PID:200015 RGD:1334451 RGD:724390 NCBI chrNW_004955523:2,025,652...2,076,037 JBrowse link
G Pofut1 protein O-fucosyltransferase 1 ISO RGD PMID:17761886 RGD:2302204 NCBI chrNW_004955422:28,809,901...28,833,186
Ensembl chrNW_004955422:28,809,901...28,833,186
JBrowse link
G Psen1 presenilin 1 ISO PID
RGD
PMID:12736250 PMID:14986688 PMID:17761886 PID:200015 RGD:1334462 RGD:2302204 RGD:724403 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737
JBrowse link
G Psen2 presenilin 2 ISO RGD PMID:17761886 RGD:2302204 NCBI chrNW_004955406:5,727,367...5,748,798
Ensembl chrNW_004955406:5,727,367...5,752,234
JBrowse link
G Psenen presenilin enhancer, gamma-secretase subunit ISO PID
RGD
PMID:17761886 PID:200015 RGD:2302204 NCBI chrNW_004955468:2,805,153...2,806,573
Ensembl chrNW_004955468:2,805,153...2,806,573
JBrowse link
G Ptcra pre T cell antigen receptor alpha ISO PID PID:200015 NCBI chrNW_004955437:8,920,997...8,927,354 JBrowse link
G Rab11a RAB11A, member RAS oncogene family ISO PID PID:200015 NCBI chrNW_004955450:9,638,761...9,656,291
Ensembl chrNW_004955450:9,638,761...9,656,603
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease ISO PID PID:200015 NCBI chrNW_004955402:11,245,857...11,331,872
Ensembl chrNW_004955402:11,245,819...11,335,367
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region ISO RGD
PID
PMID:15247148 PMID:17761886 PID:200015 RGD:2302204 RGD:2306423 NCBI chrNW_004955443:18,783,061...19,029,441
Ensembl chrNW_004955443:18,783,061...18,910,228
JBrowse link
G Rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO RGD PMID:11165380 PMID:17761886 RGD:2302204 RGD:633801 NCBI chrNW_004955506:1,110,146...1,113,130
Ensembl chrNW_004955506:1,110,220...1,112,483
JBrowse link
G Skp1 S-phase kinase associated protein 1 ISO PID PID:200015 NCBI chrNW_004955408:5,393,851...5,412,644
Ensembl chrNW_004955408:5,392,839...5,412,644
JBrowse link
G Skp2 S-phase kinase associated protein 2 ISO PID PID:200015 NCBI chrNW_004955426:20,972,663...20,999,769
Ensembl chrNW_004955426:20,972,663...20,999,769
JBrowse link
G Spen spen family transcriptional repressor ISO PID PID:200015 NCBI chrNW_004955527:2,279,438...2,343,263
Ensembl chrNW_004955527:2,280,459...2,343,262
JBrowse link
G Sspo SCO-spondin ISO PID PID:200015 NCBI chrNW_004955491:4,840,657...4,889,060 JBrowse link
G Yy1 YY1 transcription factor ISO PID PID:200015 NCBI chrNW_004955438:21,341,374...21,377,674 JBrowse link
Reelin signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 ISO PID PID:200062 NCBI chrNW_004955538:3,208,711...3,224,386
Ensembl chrNW_004955538:3,208,710...3,229,904
JBrowse link
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 ISO PID PID:200062 NCBI chrNW_004955545:2,149,107...2,192,986
Ensembl chrNW_004955545:2,149,107...2,197,153
JBrowse link
G Cbl Cbl proto-oncogene ISO PID PID:200062 NCBI chrNW_004955412:20,307,011...20,388,539
Ensembl chrNW_004955412:20,307,011...20,388,539
JBrowse link
G Cdk5 cyclin dependent kinase 5 ISO PID PID:200062 NCBI chrNW_004955491:5,491,744...5,497,280
Ensembl chrNW_004955491:5,491,744...5,497,280
JBrowse link
G Cdk5r1 cyclin dependent kinase 5 regulatory subunit 1 ISO PID PID:200062 NCBI chrNW_004955481:7,408,089...7,411,813
Ensembl chrNW_004955481:7,408,205...7,409,128
JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein ISO PID PID:200062 NCBI chrNW_004955442:19,358,202...19,388,552
Ensembl chrNW_004955442:19,358,081...19,388,815
JBrowse link
G Dab1 DAB adaptor protein 1 ISO PID
RGD
PMID:12670697 PMID:12764038 PMID:16266828 PID:200062 RGD:1358468 RGD:2324967 RGD:727518 NCBI chrNW_004955464:2,325,529...2,721,497
Ensembl chrNW_004955464:2,455,346...2,724,358
JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase ISO PID
RGD
PMID:12778121 PID:200062 RGD:2324970 NCBI chrNW_004955411:36,403,156...36,597,660
Ensembl chrNW_004955411:36,401,842...36,512,054
JBrowse link
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 ISO RGD PMID:18237558 RGD:2325284 NCBI chrNW_004955408:7,912,223...8,226,241
Ensembl chrNW_004955408:7,912,592...8,223,570
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A ISO PID
RGD
PMID:18237558 PID:200062 RGD:2325284 NCBI chrNW_004955442:8,171,114...8,565,187
Ensembl chrNW_004955442:8,174,232...8,562,059
JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B ISO PID
RGD
PMID:18237558 PID:200062 RGD:2325284 NCBI chrNW_004955413:10,358,931...10,780,004
Ensembl chrNW_004955413:10,376,597...10,779,145
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO PID PID:200062 NCBI chrNW_004955427:19,489,972...19,671,137
Ensembl chrNW_004955427:19,495,422...19,671,137
JBrowse link
G Itga3 integrin subunit alpha 3 ISO PID
RGD
PMID:15583703 PID:200062 RGD:2325851 NCBI chrNW_004955451:11,563,120...11,590,119
Ensembl chrNW_004955451:11,561,704...11,589,727
JBrowse link
G Itgb1 integrin subunit beta 1 ISO PID
RGD
PMID:15583703 PID:200062 RGD:2325851 NCBI chrNW_004955462:4,454,809...4,483,227
Ensembl chrNW_004955462:4,454,809...4,484,842
JBrowse link
G Lrp8 LDL receptor related protein 8 ISO PID
RGD
PMID:19846452 PID:200062 RGD:2324974 NCBI chrNW_004955464:5,837,002...5,912,178
Ensembl chrNW_004955464:5,837,009...5,911,672
JBrowse link
G Lrpap1 LDL receptor related protein associated protein 1 ISO PID PID:200062 NCBI chrNW_004955514:2,195,228...2,208,258
Ensembl chrNW_004955514:2,195,228...2,208,688
JBrowse link
G Map1b microtubule associated protein 1B ISO PID PID:200062 NCBI chrNW_004955575:914,607...1,020,971
Ensembl chrNW_004955575:913,723...1,021,028
JBrowse link
G Map2k7 mitogen-activated protein kinase kinase 7 ISO PID PID:200062 NCBI chrNW_004955563:1,352,638...1,361,598
Ensembl chrNW_004955563:1,352,638...1,361,598
JBrowse link
G Map3k11 mitogen-activated protein kinase kinase kinase 11 ISO PID PID:200062 NCBI chrNW_004955422:19,651,371...19,666,468
Ensembl chrNW_004955422:19,651,372...19,667,924
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO PID PID:200062 NCBI chrNW_004955556:1,593,552...1,705,543
Ensembl chrNW_004955556:1,593,494...1,665,784
JBrowse link
G Mapt microtubule associated protein tau ISO PID PID:200062 NCBI chrNW_004955478:10,222,439...10,271,439
Ensembl chrNW_004955478:10,225,823...10,271,442
JBrowse link
G Nck2 NCK adaptor protein 2 ISO PID PID:200062 NCBI chrNW_004955470:10,487,962...10,593,046
Ensembl chrNW_004955470:10,487,481...10,593,046
JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 ISO PID
RGD
PMID:17330141 PID:200062 RGD:4107040 NCBI chrNW_004955481:608,897...686,454
Ensembl chrNW_004955481:608,897...686,452
JBrowse link
G Pafah1b2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 ISO RGD PMID:17330141 RGD:4107040 NCBI chrNW_004955412:18,471,621...18,494,082
Ensembl chrNW_004955412:18,474,199...18,494,082
JBrowse link
G Pafah1b3 platelet activating factor acetylhydrolase 1b catalytic subunit 3 ISO RGD PMID:17330141 RGD:4107040 NCBI chrNW_004955555:609,925...612,701
Ensembl chrNW_004955555:609,925...612,701
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO PID PID:200062 NCBI chrNW_004955420:8,355,415...8,427,024
Ensembl chrNW_004955420:8,356,353...8,427,024
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO PID
RGD
PMID:17167084 PID:200062 RGD:4108507 NCBI chrNW_004955446:1,020,707...1,098,327
Ensembl chrNW_004955446:1,020,043...1,098,820
JBrowse link
G Rap1a RAP1A, member of RAS oncogene family ISO PID PID:200062 NCBI chrNW_004955435:15,090,521...15,171,397
Ensembl chrNW_004955435:15,150,827...15,171,397
JBrowse link
G Rapgef1 Rap guanine nucleotide exchange factor 1 ISO PID PID:200062 NCBI chrNW_004955513:1,224,418...1,328,176
Ensembl chrNW_004955513:1,226,205...1,315,922
JBrowse link
G Reln reelin ISO PID
RGD
PMID:12670697 PMID:12893944 PID:200062 RGD:1358346 RGD:727518 NCBI chrNW_004955410:8,424,439...8,863,966
Ensembl chrNW_004955410:8,424,394...8,863,969
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO RGD PMID:18237558 RGD:2325284 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695
JBrowse link
G Vldlr very low density lipoprotein receptor ISO PID
RGD
PMID:12670697 PMID:12764038 PMID:12893944 PID:200062 RGD:1358346 RGD:1358468 RGD:727518 NCBI chrNW_004955434:7,013,092...7,050,103
Ensembl chrNW_004955434:7,013,092...7,050,103
JBrowse link
syndecan signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn1 actinin alpha 1 ISO PID PID:200134 NCBI chrNW_004955466:1,388,507...1,480,990
Ensembl chrNW_004955466:1,388,507...1,480,282
JBrowse link
G Adam12 ADAM metallopeptidase domain 12 ISO PID PID:200134 NCBI chrNW_004955477:3,917,637...4,263,529
Ensembl chrNW_004955477:3,922,644...4,263,296
JBrowse link
G Agrp agouti related neuropeptide ISO PID PID:200198 NCBI chrNW_004955484:9,165,120...9,166,789
Ensembl chrNW_004955484:9,165,120...9,166,789
JBrowse link
G Aph1a aph-1 homolog A, gamma-secretase subunit ISO PID PID:200198 NCBI chrNW_004955413:506,297...509,787
Ensembl chrNW_004955413:506,297...509,787
JBrowse link
G Aph1b aph-1 homolog B, gamma-secretase subunit ISO PID PID:200198 NCBI chrNW_004955450:12,000,682...12,022,183
Ensembl chrNW_004955450:12,000,424...12,022,071
JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO PID PID:200192 NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244
JBrowse link
G Bsg basigin (Ok blood group) ISO PID PID:200156 NCBI chrNW_004955495:7,148,806...7,156,296 JBrowse link
G Cask calcium/calmodulin dependent serine protein kinase ISO PID PID:200156 PID:200192 PID:200198 NCBI chrNW_004955565:879,560...1,242,727
Ensembl chrNW_004955565:879,830...1,237,692
JBrowse link
G Casp3 caspase 3 ISO PID PID:200192 NCBI chrNW_004955403:24,315,712...24,326,271 JBrowse link
G Cav2 caveolin 2 ISO PID PID:200192 NCBI chrNW_004955432:22,240,041...22,242,200 JBrowse link
G Ccl5 C-C motif chemokine ligand 5 ISO PID PID:200134 PID:200156 NCBI chrNW_004955481:10,293,758...10,301,118
Ensembl chrNW_004955481:10,293,399...10,301,143
JBrowse link
G Col10a1 collagen type X alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955526:641,577...679,295 JBrowse link
G Col11a1 collagen type XI alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955435:7,352,617...7,545,235
Ensembl chrNW_004955435:7,352,617...7,545,235
JBrowse link
G Col11a2 collagen type XI alpha 2 chain ISO PID PID:200156 NCBI chrNW_004955437:1,739,426...1,767,087
Ensembl chrNW_004955437:1,740,402...1,766,490
JBrowse link
G Col12a1 collagen type XII alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955488:8,128,816...8,240,714
Ensembl chrNW_004955488:8,131,846...8,240,777
JBrowse link
G Col13a1 collagen type XIII alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955437:21,256,410...21,393,385
Ensembl chrNW_004955437:21,256,636...21,392,814
JBrowse link
G Col14a1 collagen type XIV alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955417:25,579,547...25,774,067
Ensembl chrNW_004955417:25,579,547...25,774,127
JBrowse link
G Col15a1 collagen type XV alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955419:26,577,172...26,687,750
Ensembl chrNW_004955419:26,574,835...26,687,803
JBrowse link
G Col16a1 collagen type XVI alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955452:10,062,409...10,111,778
Ensembl chrNW_004955452:10,062,562...10,103,064
JBrowse link
G Col17a1 collagen type XVII alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955485:6,568,178...6,616,972 JBrowse link
G Col1a1 collagen type I alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955451:11,468,156...11,484,410
Ensembl chrNW_004955451:11,468,290...11,483,073
JBrowse link
G Col1a2 collagen type I alpha 2 chain ISO PID PID:200156 NCBI chrNW_004955432:11,127,961...11,164,145
Ensembl chrNW_004955432:11,128,112...11,163,302
JBrowse link
G Col2a1 collagen type II alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955500:6,860,771...6,885,466
Ensembl chrNW_004955500:6,860,771...6,885,473
JBrowse link
G Col3a1 collagen type III alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955403:9,720,831...9,758,019
Ensembl chrNW_004955403:9,721,114...9,757,887
JBrowse link
G Col4a1 collagen type IV alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955404:2,196,193...2,327,324
Ensembl chrNW_004955404:2,260,029...2,326,074
JBrowse link
G Col4a3 collagen type IV alpha 3 chain ISO PID PID:200156 NCBI chrNW_004955453:7,261,278...7,351,414 JBrowse link
G Col4a4 collagen type IV alpha 4 chain ISO PID PID:200156 NCBI chrNW_004955453:7,405,167...7,524,038
Ensembl chrNW_004955453:7,420,203...7,520,200
JBrowse link
G Col4a5 collagen type IV alpha 5 chain ISO PID PID:200156 NCBI chrNW_004955490:7,168,725...7,409,655
Ensembl chrNW_004955490:7,168,676...7,409,887
JBrowse link
G Col4a6 collagen type IV alpha 6 chain ISO PID PID:200156 NCBI chrNW_004955490:7,409,687...7,764,300
Ensembl chrNW_004955490:7,409,160...7,762,929
JBrowse link
G Col5a1 collagen type V alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955513:3,533,612...3,660,605
Ensembl chrNW_004955513:3,533,614...3,658,161
JBrowse link
G Col5a2 collagen type V alpha 2 chain ISO PID PID:200156 NCBI chrNW_004955403:9,562,401...9,703,828
Ensembl chrNW_004955403:9,562,401...9,703,828
JBrowse link
G Col6a1 collagen type VI alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955407:42,461,837...42,479,048
Ensembl chrNW_004955407:42,461,952...42,478,261
JBrowse link
G Col6a2 collagen type VI alpha 2 chain ISO PID PID:200156 NCBI chrNW_004955407:42,575,677...42,600,967
Ensembl chrNW_004955407:42,575,170...42,600,495
JBrowse link
G Col6a3 collagen type VI alpha 3 chain ISO PID PID:200156 NCBI chrNW_004955542:2,869,183...2,950,569
Ensembl chrNW_004955542:2,887,723...2,949,062
JBrowse link
G Col7a1 collagen type VII alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955532:650,913...681,186 JBrowse link
G Col8a1 collagen type VIII alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955427:1,187,550...1,335,794
Ensembl chrNW_004955427:1,187,550...1,335,794
JBrowse link
G Col8a2 collagen type VIII alpha 2 chain ISO PID PID:200156 NCBI chrNW_004955452:14,127,654...14,149,582
Ensembl chrNW_004955452:14,127,630...14,155,212
JBrowse link
G Col9a1 collagen type IX alpha 1 chain ISO PID PID:200156 NCBI chrNW_004955488:5,296,895...5,384,940
Ensembl chrNW_004955488:5,296,895...5,384,940
JBrowse link
G Col9a2 collagen type IX alpha 2 chain ISO PID PID:200156 NCBI chrNW_004955537:139,481...152,866
Ensembl chrNW_004955537:139,481...153,567
JBrowse link
G Col9a3 collagen type IX alpha 3 chain ISO PID PID:200156 NCBI chrNW_004955528:1,286,314...1,305,863 JBrowse link
G Csf2 colony stimulating factor 2 ISO PID PID:200192 NCBI chrNW_004955408:3,452,009...3,454,255
Ensembl chrNW_004955408:3,451,965...3,454,312
JBrowse link
G Cttn cortactin ISO PID PID:200198 NCBI chrNW_004955422:15,838,036...15,874,067
Ensembl chrNW_004955422:15,835,145...15,874,108
JBrowse link
G Cxcl12 C-X-C motif chemokine ligand 12 ISO PID PID:200134 NCBI chrNW_004955546:1,929,269...1,941,690
Ensembl chrNW_004955546:1,929,269...1,941,690
JBrowse link
G Cxcl8 C-X-C motif chemokine ligand 8 ISO PID PID:200192 PID:200198 NCBI chrNW_004955474:247,326...250,355
Ensembl chrNW_004955474:241,501...250,643
JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 ISO PID PID:200134 NCBI chrNW_004955440:3,456,165...3,460,024
Ensembl chrNW_004955440:3,455,153...3,460,109
JBrowse link
G Dnm2 dynamin 2 ISO PID PID:200134 NCBI chrNW_004955495:1,860,644...1,934,589
Ensembl chrNW_004955495:1,860,644...1,934,818
JBrowse link
G Egfr epidermal growth factor receptor ISO PID PID:200198 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Epb41 erythrocyte membrane protein band 4.1 ISO PID PID:200192 NCBI chrNW_004955452:7,930,095...8,123,165
Ensembl chrNW_004955452:8,009,194...8,124,713
JBrowse link
G Ephb2 EPH receptor B2 ISO PID PID:200192 NCBI chrNW_004955452:2,844,713...2,986,790
Ensembl chrNW_004955452:2,844,713...2,980,445
JBrowse link
G Ezr ezrin ISO PID PID:200192 NCBI chrNW_004955439:3,701,722...3,740,345
Ensembl chrNW_004955439:3,703,013...3,740,345
JBrowse link
G F2 coagulation factor II, thrombin ISO PID PID:200134 NCBI chrNW_004955422:1,356,675...1,367,788
Ensembl chrNW_004955422:1,356,769...1,367,517
JBrowse link
G Fgf2 fibroblast growth factor 2 ISO PID PID:200134 NCBI chrNW_004955428:17,840,554...17,894,779
Ensembl chrNW_004955428:17,840,628...17,894,773
JBrowse link
G Fgf6 fibroblast growth factor 6 ISO PID PID:200134 NCBI chrNW_004955413:2,246,965...2,257,883
Ensembl chrNW_004955413:2,246,965...2,257,883
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 ISO PID PID:200134 NCBI chrNW_004955463:14,013,247...14,064,354
Ensembl chrNW_004955463:14,013,247...14,064,111
JBrowse link
G Fn1 fibronectin 1 ISO PID PID:200134 PID:200192 NCBI chrNW_004955457:629,599...694,948
Ensembl chrNW_004955457:629,518...696,975
JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase ISO PID PID:200198 NCBI chrNW_004955411:36,403,156...36,597,660
Ensembl chrNW_004955411:36,401,842...36,512,054
JBrowse link
G Fzd7 frizzled class receptor 7 ISO PID PID:200134 NCBI chrNW_004955457:12,729,277...12,733,057
Ensembl chrNW_004955457:12,731,279...12,732,979
JBrowse link
G Gipc1 GIPC PDZ domain containing family member 1 ISO PID PID:200134 NCBI chrNW_004955415:33,067,689...33,077,749
Ensembl chrNW_004955415:33,067,689...33,074,730
JBrowse link
G Hgf hepatocyte growth factor ISO PID PID:200156 NCBI chrNW_004955410:4,114,280...4,181,953
Ensembl chrNW_004955410:4,114,778...4,182,058
JBrowse link
G Hpse heparanase ISO PID PID:200156 NCBI chrNW_004955474:6,367,467...6,394,395
Ensembl chrNW_004955474:6,367,467...6,394,395
JBrowse link
G Hras HRas proto-oncogene, GTPase ISO PID PID:200192 NCBI chrNW_004955476:11,508,446...11,510,333
Ensembl chrNW_004955476:11,508,126...11,510,333
JBrowse link
G Itga2 integrin subunit alpha 2 ISO PID PID:200192 NCBI chrNW_004955446:14,309,516...14,421,991
Ensembl chrNW_004955446:14,309,349...14,422,170
JBrowse link
G Itga5 integrin subunit alpha 5 ISO PID PID:200134 PID:200192 NCBI chrNW_004955458:1,635,554...1,657,609
Ensembl chrNW_004955458:1,632,282...1,658,295
JBrowse link
G Itgb1 integrin subunit beta 1 ISO PID PID:200134 PID:200192 NCBI chrNW_004955462:4,454,809...4,483,227
Ensembl chrNW_004955462:4,454,809...4,484,842
JBrowse link
G Kng1 kininogen 1 ISO PID PID:200192 NCBI chrNW_004955420:20,989,197...21,016,084 JBrowse link
G Lama1 laminin subunit alpha 1 ISO PID PID:200134 PID:200192 NCBI chrNW_004955402:4,281,415...4,397,158
Ensembl chrNW_004955402:4,285,492...4,400,348
JBrowse link
G Lama3 laminin subunit alpha 3 ISO PID PID:200134 PID:200192 NCBI chrNW_004955402:11,980,980...12,362,143 JBrowse link
G Lama5 laminin subunit alpha 5 ISO PID PID:200156 NCBI chrNW_004955528:1,713,110...1,753,374
Ensembl chrNW_004955528:1,713,125...1,753,116
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 ISO PID PID:200156 PID:200192 NCBI chrNW_004955442:17,284,232...17,380,026
Ensembl chrNW_004955442:17,284,232...17,380,020
JBrowse link
G Mapk3 mitogen-activated protein kinase 3 ISO PID PID:200156 PID:200192 NCBI chrNW_004955493:6,870,699...6,876,836
Ensembl chrNW_004955493:6,869,668...6,879,152
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO PID PID:200192 NCBI chrNW_004955556:1,593,552...1,705,543
Ensembl chrNW_004955556:1,593,494...1,665,784
JBrowse link
G Mc4r melanocortin 4 receptor ISO PID PID:200198 NCBI chrNW_004955402:44,453,973...44,456,689
Ensembl chrNW_004955402:44,455,294...44,456,292
JBrowse link
G Mdk midkine ISO PID PID:200134 NCBI chrNW_004955422:1,655,351...1,657,026
Ensembl chrNW_004955422:1,655,358...1,657,044
JBrowse link
G Met MET proto-oncogene, receptor tyrosine kinase ISO PID PID:200156 NCBI chrNW_004955432:22,440,671...22,519,592
Ensembl chrNW_004955432:22,440,637...22,517,647
JBrowse link
G Mmp2 matrix metallopeptidase 2 ISO PID PID:200192 NCBI chrNW_004955433:13,024,844...13,050,041
Ensembl chrNW_004955433:13,024,418...13,052,775
JBrowse link
G Mmp7 matrix metallopeptidase 7 ISO PID PID:200156 NCBI chrNW_004955412:5,780,772...5,792,485
Ensembl chrNW_004955412:5,778,502...5,792,445
JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO PID PID:200134 PID:200156 NCBI chrNW_004955445:11,295,500...11,303,322
Ensembl chrNW_004955445:11,295,448...11,303,288
JBrowse link
G Ncan neurocan ISO PID PID:200198 NCBI chrNW_004955524:2,602,767...2,628,771
Ensembl chrNW_004955524:2,602,715...2,628,805
JBrowse link
G Ncstn nicastrin ISO PID PID:200198 NCBI chrNW_004955468:12,111,078...12,126,404
Ensembl chrNW_004955468:12,111,078...12,127,033
JBrowse link
G Nf1 neurofibromin 1 ISO PID PID:200192 NCBI chrNW_004955481:6,145,855...6,404,179
Ensembl chrNW_004955481:6,145,855...6,404,179
JBrowse link
G Nudt16l1 nudix hydrolase 16 like 1 ISO PID PID:200134 NCBI chrNW_004955442:12,761,962...12,777,549
Ensembl chrNW_004955442:12,775,630...12,777,549
JBrowse link
G Plg plasminogen ISO PID PID:200134 NCBI chrNW_004955439:20,317,814...20,366,724
Ensembl chrNW_004955439:20,317,552...20,366,475
JBrowse link
G Pomc proopiomelanocortin ISO PID PID:200198 NCBI chrNW_004955469:7,217,233...7,220,401
Ensembl chrNW_004955469:7,217,363...7,220,386
JBrowse link
G Ppib peptidylprolyl isomerase B ISO PID PID:200156 NCBI chrNW_004955450:11,241,279...11,246,628
Ensembl chrNW_004955450:11,241,279...11,249,056
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha ISO PID PID:200156 PID:200192 NCBI chrNW_004955415:32,794,172...32,807,944
Ensembl chrNW_004955415:32,793,718...32,812,930
JBrowse link
G Prkca protein kinase C alpha ISO PID PID:200134 NCBI chrNW_004955478:5,686,639...6,090,356
Ensembl chrNW_004955478:5,686,640...6,083,967
JBrowse link
G Prkcd protein kinase C delta ISO PID PID:200134 PID:200192 NCBI chrNW_004955430:3,125,066...3,151,857
Ensembl chrNW_004955430:3,124,738...3,153,274
JBrowse link
G Psen1 presenilin 1 ISO PID PID:200198 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737
JBrowse link
G Psenen presenilin enhancer, gamma-secretase subunit ISO PID PID:200198 NCBI chrNW_004955468:2,805,153...2,806,573
Ensembl chrNW_004955468:2,805,153...2,806,573
JBrowse link
G Ptn pleiotrophin ISO PID PID:200198 NCBI chrNW_004955494:5,580,264...5,681,848
Ensembl chrNW_004955494:5,580,422...5,684,190
JBrowse link
G Rac1 Rac family small GTPase 1 ISO PID PID:200134 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351
JBrowse link
G Rack1 receptor for activated C kinase 1 ISO PID PID:200192 NCBI chrNW_004955530:78,488...83,297
Ensembl chrNW_004955530:78,426...83,297
JBrowse link
G Rasa1 RAS p21 protein activator 1 ISO PID PID:200192 NCBI chrNW_004955418:23,807,740...23,897,699
Ensembl chrNW_004955418:23,807,740...23,897,707
JBrowse link
G Rhoa ras homolog family member A ISO PID PID:200134 PID:200192 NCBI chrNW_004955532:1,300,821...1,347,453
Ensembl chrNW_004955532:1,300,462...1,347,451
JBrowse link
G Sdc1 syndecan 1 ISO PID PID:200156 NCBI chrNW_004955469:2,762,696...2,773,697 JBrowse link
G Sdc2 syndecan 2 ISO PID PID:200192 NCBI chrNW_004955417:12,462,354...12,563,374
Ensembl chrNW_004955417:12,462,354...12,564,633
JBrowse link
G Sdc3 syndecan 3 ISO PID PID:200198 NCBI chrNW_004955452:9,442,860...9,479,776
Ensembl chrNW_004955452:9,442,759...9,452,027
JBrowse link
G Sdc4 syndecan 4 ISO PID PID:200134 NCBI chrNW_004955445:11,990,916...12,009,178
Ensembl chrNW_004955445:11,990,792...12,011,553
JBrowse link
G Sdcbp syndecan binding protein ISO PID PID:200134 PID:200156 PID:200192 NCBI chrNW_004955454:17,093,930...17,113,491
Ensembl chrNW_004955454:17,089,232...17,113,484
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO PID PID:200192 PID:200198 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695
JBrowse link
G Tfpi tissue factor pathway inhibitor ISO PID PID:200134 NCBI chrNW_004955403:10,925,155...11,004,229
Ensembl chrNW_004955403:10,924,893...11,004,284
JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO PID PID:200156 PID:200192 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
JBrowse link
G Thbs1 thrombospondin 1 ISO PID PID:200134 NCBI chrNW_004955416:6,490,034...6,506,419
Ensembl chrNW_004955416:6,489,451...6,506,419
JBrowse link
G Tnc tenascin C ISO PID PID:200134 NCBI chrNW_004955419:12,569,620...12,662,897
Ensembl chrNW_004955419:12,569,547...12,662,958
JBrowse link
G Tnfrsf13b TNF receptor superfamily member 13B ISO PID PID:200134 PID:200192 NCBI chrNW_004955577:930,612...971,698 JBrowse link
G Trappc4 trafficking protein particle complex subunit 4 ISO PID PID:200192 NCBI chrNW_004955412:20,129,154...20,133,043
Ensembl chrNW_004955412:20,129,154...20,133,043
JBrowse link
the Wnt/calcium signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt11 Wnt family member 11 ISO RGD PMID:15084607 RGD:1304321 NCBI chrNW_004955414:15,674,478...15,694,758
Ensembl chrNW_004955414:15,674,940...15,694,883
JBrowse link
Wnt signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk15 cyclin dependent kinase 15 ISO RGD PMID:23095888 RGD:13208951 NCBI chrNW_004955457:12,878,736...12,966,434
Ensembl chrNW_004955457:12,880,959...12,966,410
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 ISO RGD NCBI chrNW_004955486:9,464,390...9,469,984
Ensembl chrNW_004955486:9,464,313...9,469,984
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 ISO RGD NCBI chrNW_004955467:9,675,912...9,683,996
Ensembl chrNW_004955467:9,675,912...9,683,996
JBrowse link
G Dvl3 dishevelled segment polarity protein 3 ISO RGD NCBI chrNW_004955420:23,291,650...23,301,695
Ensembl chrNW_004955420:23,293,222...23,301,694
JBrowse link
G Fzd10 frizzled class receptor 10 ISO RGD NCBI chrNW_004955482:1,556,123...1,558,782
Ensembl chrNW_004955482:1,557,088...1,558,782
JBrowse link
G Fzd2 frizzled class receptor 2 ISO RGD NCBI chrNW_004955451:17,501,410...17,503,726 JBrowse link
G Fzd3 frizzled class receptor 3 ISO RGD NCBI chrNW_004955403:50,899,658...50,959,077
Ensembl chrNW_004955403:50,899,523...50,959,071
JBrowse link
G Fzd4 frizzled class receptor 4 ISO RGD NCBI chrNW_004955414:6,094,585...6,103,910
Ensembl chrNW_004955414:6,094,585...6,098,865
JBrowse link
G Fzd5 frizzled class receptor 5 ISO RGD NCBI chrNW_004955457:7,282,403...7,288,918
Ensembl chrNW_004955457:7,282,403...7,288,918
JBrowse link
G Fzd6 frizzled class receptor 6 ISO RGD NCBI chrNW_004955417:27,465,730...27,493,752
Ensembl chrNW_004955417:27,465,701...27,494,790
JBrowse link
G Fzd7 frizzled class receptor 7 ISO RGD NCBI chrNW_004955457:12,729,277...12,733,057
Ensembl chrNW_004955457:12,731,279...12,732,979
JBrowse link
G Fzd8 frizzled class receptor 8 ISO RGD NCBI chrNW_004955462:5,870,410...5,873,714 JBrowse link
G Fzd9 frizzled class receptor 9 ISO RGD NCBI chrNW_004955456:14,245,994...14,247,551
Ensembl chrNW_004955456:14,246,324...14,247,550
JBrowse link
G Wnt1 Wnt family member 1 ISO RGD PMID:9353119 RGD:13208953 NCBI chrNW_004955500:7,797,063...7,811,142
Ensembl chrNW_004955500:7,797,060...7,811,167
JBrowse link
G Wnt10a Wnt family member 10A ISO RGD PMID:17286598 RGD:2300201 NCBI chrNW_004955453:14,528,373...14,540,801
Ensembl chrNW_004955453:14,528,153...14,540,818
JBrowse link
G Wnt10b Wnt family member 10B ISO RGD NCBI chrNW_004955500:7,782,782...7,800,281
Ensembl chrNW_004955500:7,782,782...7,788,309
JBrowse link
G Wnt11 Wnt family member 11 ISO RGD NCBI chrNW_004955414:15,674,478...15,694,758
Ensembl chrNW_004955414:15,674,940...15,694,883
JBrowse link
G Wnt16 Wnt family member 16 ISO RGD NCBI chrNW_004955479:3,065,312...3,077,260
Ensembl chrNW_004955479:3,065,295...3,077,260
JBrowse link
G Wnt2 Wnt family member 2 ISO RGD NCBI chrNW_004955432:22,988,208...23,024,530
Ensembl chrNW_004955432:22,984,170...23,027,705
JBrowse link
G Wnt2b Wnt family member 2B ISO RGD NCBI chrNW_004955435:15,948,262...15,962,958
Ensembl chrNW_004955435:15,948,262...15,962,958
JBrowse link
G Wnt3a Wnt family member 3A ISO RGD NCBI chrNW_004955581:351,375...382,541
Ensembl chrNW_004955581:350,889...382,541
JBrowse link
G Wnt4 Wnt family member 4 ISO RGD NCBI chrNW_004955452:2,319,446...2,344,740
Ensembl chrNW_004955452:2,319,446...2,344,989
JBrowse link
G Wnt5a Wnt family member 5A ISO RGD NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
G Wnt5b Wnt family member 5B ISO RGD NCBI chrNW_004955454:4,158,648...4,192,709
Ensembl chrNW_004955454:4,178,609...4,192,710
JBrowse link
G Wnt6 Wnt family member 6 ISO RGD NCBI chrNW_004955453:14,547,427...14,560,001
Ensembl chrNW_004955453:14,545,700...14,560,976
JBrowse link
G Wnt7a Wnt family member 7A ISO RGD NCBI chrNW_004955429:12,647,993...12,693,998
Ensembl chrNW_004955429:12,647,993...12,694,895
JBrowse link
G Wnt7b Wnt family member 7B ISO RGD NCBI chrNW_004955413:30,146,185...30,185,693
Ensembl chrNW_004955413:30,144,869...30,181,791
JBrowse link
G Wnt8a Wnt family member 8A ISO RGD NCBI chrNW_004955418:2,332,636...2,338,099
Ensembl chrNW_004955418:2,332,636...2,338,085
JBrowse link
G Wnt8b Wnt family member 8B ISO RGD NCBI chrNW_004955485:9,658,432...9,679,371
Ensembl chrNW_004955485:9,658,432...9,679,385
JBrowse link
G Wnt9a Wnt family member 9A ISO RGD NCBI chrNW_004955581:422,028...438,321
Ensembl chrNW_004955581:421,451...438,380
JBrowse link
G Wnt9b Wnt family member 9B ISO RGD NCBI chrNW_004955478:10,816,405...10,841,416
Ensembl chrNW_004955478:10,816,405...10,841,416
JBrowse link
Wnt signaling, canonical pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO PID
RGD
PMID:18432252 PID:200077 RGD:2293188 NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Axin1 axin 1 ISO PID
RGD
PMID:18432252 PID:200077 RGD:2293188 NCBI chrNW_004955442:16,845,728...16,898,301
Ensembl chrNW_004955442:16,843,152...16,898,430
JBrowse link
G Axin2 axin 2 ISO RGD PMID:18432252 RGD:2293188 NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225
JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase ISO RGD PMID:18432252 RGD:2293188 NCBI chrNW_004955485:8,724,375...8,846,647
Ensembl chrNW_004955485:8,724,380...8,837,741
JBrowse link
G Cav1 caveolin 1 ISO PID PID:200077 NCBI chrNW_004955432:22,258,262...22,292,403
Ensembl chrNW_004955432:22,258,250...22,292,403
JBrowse link
G Crebbp CREB binding protein ISO RGD PMID:16793760 RGD:2302032 NCBI chrNW_004955442:13,559,496...13,691,913
Ensembl chrNW_004955442:13,559,496...13,692,004
JBrowse link
G Csnk1a1 casein kinase 1 alpha 1 ISO RGD PMID:18432252 RGD:2293188 NCBI chrNW_004955415:4,921,356...4,966,705
Ensembl chrNW_004955415:4,921,852...4,966,705
JBrowse link
G Csnk1g1 casein kinase 1 gamma 1 ISO PID
RGD
PMID:18432252 PID:200077 RGD:2293188 NCBI chrNW_004955450:11,088,601...11,239,227
Ensembl chrNW_004955450:11,102,257...11,233,601
JBrowse link
G Ctnnb1 catenin beta 1 ISO PID
RGD
PMID:16478782 PMID:18432252 PMID:20042609 PID:200077 RGD:1581696 RGD:2293188 RGD:7242068 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G Cul3 cullin 3 ISO PID PID:200077 NCBI chrNW_004955453:9,546,554...9,629,976
Ensembl chrNW_004955453:9,564,522...9,629,976
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO RGD PMID:17143291 PMID:18432252 RGD:2293188 RGD:2301921 NCBI chrNW_004955425:7,353,964...7,357,599 JBrowse link
G Dkk2 dickkopf WNT signaling pathway inhibitor 2 ISO RGD PMID:17143291 RGD:2301921 NCBI chrNW_004955496:2,489,373...2,578,310
Ensembl chrNW_004955496:2,489,373...2,578,639
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 ISO PID
RGD
PMID:16478782 PID:200077 RGD:1581696 NCBI chrNW_004955486:9,464,390...9,469,984
Ensembl chrNW_004955486:9,464,313...9,469,984
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 ISO PID PID:200077 NCBI chrNW_004955467:9,675,912...9,683,996
Ensembl chrNW_004955467:9,675,912...9,683,996
JBrowse link
G Dvl3 dishevelled segment polarity protein 3 ISO PID PID:200077 NCBI chrNW_004955420:23,291,650...23,301,695
Ensembl chrNW_004955420:23,293,222...23,301,694
JBrowse link
G Frzb frizzled related protein ISO RGD PMID:23085770 RGD:7365107 NCBI chrNW_004955403:14,598,765...14,627,997
Ensembl chrNW_004955403:14,598,765...14,631,154
JBrowse link
G Fzd10 frizzled class receptor 10 ISO RGD PMID:15923619 RGD:2293491 NCBI chrNW_004955482:1,556,123...1,558,782
Ensembl chrNW_004955482:1,557,088...1,558,782
JBrowse link
G Fzd5 frizzled class receptor 5 ISO PID PID:200077 NCBI chrNW_004955457:7,282,403...7,288,918
Ensembl chrNW_004955457:7,282,403...7,288,918
JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha ISO PID PID:200077 NCBI chrNW_004955555:668,641...676,351
Ensembl chrNW_004955555:667,973...676,351
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO RGD
PID
PMID:16478782 PMID:18432252 PMID:20042609 PID:200077 RGD:1581696 RGD:2293188 RGD:7242068 NCBI chrNW_004955427:19,489,972...19,671,137
Ensembl chrNW_004955427:19,495,422...19,671,137
JBrowse link
G Klhl12 kelch like family member 12 ISO PID PID:200077 NCBI chrNW_004955406:38,903,233...38,931,756
Ensembl chrNW_004955406:38,900,022...38,931,374
JBrowse link
G Kremen1 kringle containing transmembrane protein 1 ISO RGD PMID:17143291 RGD:2301921 NCBI chrNW_004955455:3,308,740...3,368,690
Ensembl chrNW_004955455:3,320,346...3,368,690
JBrowse link
G Kremen2 kringle containing transmembrane protein 2 ISO RGD PMID:17143291 RGD:2301921 NCBI chrNW_004955442:14,376,466...14,381,106
Ensembl chrNW_004955442:14,376,466...14,381,106
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 ISO RGD PMID:10528152 PMID:18432252 RGD:2293188 RGD:2301908 NCBI chrNW_004955496:1,728,840...1,827,749
Ensembl chrNW_004955496:1,728,840...1,828,698
JBrowse link
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 ISO RGD PMID:23085770 RGD:7365107 NCBI chrNW_004955476:6,611,102...6,629,294
Ensembl chrNW_004955476:6,610,103...6,629,264
JBrowse link
G Lgr5 leucine rich repeat containing G protein-coupled receptor 5 ISO RGD PMID:23085770 RGD:7365107 NCBI chrNW_004955405:11,507,083...11,574,504
Ensembl chrNW_004955405:11,507,083...11,574,569
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO RGD PMID:15923619 PMID:18432252 RGD:2293188 RGD:2293491 NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO PID
RGD
PMID:18432252 PID:200077 RGD:2293188 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650
JBrowse link
G Ndp norrin cystine knot growth factor NDP ISO RGD PMID:23085770 RGD:7365107 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846
JBrowse link
G Nkd2 NKD inhibitor of WNT signaling pathway 2 ISO PID PID:200077 NCBI chrNW_004955504:507,253...527,275
Ensembl chrNW_004955504:507,388...526,407
JBrowse link
G Pi4k2a phosphatidylinositol 4-kinase type 2 alpha ISO PID PID:200077 NCBI chrNW_004955507:3,729,947...3,761,703
Ensembl chrNW_004955507:3,730,071...3,756,880
JBrowse link
G Pip5k1b phosphatidylinositol-4-phosphate 5-kinase type 1 beta ISO PID PID:200077 NCBI chrNW_004955434:4,020,219...4,315,072
Ensembl chrNW_004955434:4,019,847...4,315,072
JBrowse link
G Porcn porcupine O-acyltransferase ISO RGD PMID:23439944 RGD:7365109 NCBI chrNW_004955543:75,870...91,575
Ensembl chrNW_004955543:75,875...91,975
JBrowse link
G Ppp2r5a protein phosphatase 2 regulatory subunit B'alpha ISO PID PID:200077 NCBI chrNW_004955406:5,059,826...5,115,312
Ensembl chrNW_004955406:5,059,826...5,115,312
JBrowse link
G Ranbp3 RAN binding protein 3 ISO PID PID:200077 NCBI chrNW_004955495:3,495,179...3,549,528
Ensembl chrNW_004955495:3,527,770...3,548,362
JBrowse link
G Rnf43 ring finger protein 43 ISO RGD PMID:23151663 RGD:7365105 NCBI chrNW_004955451:4,604,985...4,680,762 JBrowse link
G Rspo1 R-spondin 1 ISO RGD PMID:23151663 RGD:7365105 NCBI chrNW_004955452:15,415,417...15,435,616
Ensembl chrNW_004955452:15,415,932...15,435,656
JBrowse link
G Rspo2 R-spondin 2 ISO RGD PMID:23151663 RGD:7365105 NCBI chrNW_004955417:30,643,554...30,704,497
Ensembl chrNW_004955417:30,643,554...30,704,497
JBrowse link
G Rspo3 R-spondin 3 ISO RGD PMID:23151663 RGD:7365105 NCBI chrNW_004955436:8,151,122...8,235,183
Ensembl chrNW_004955436:8,151,122...8,237,861
JBrowse link
G Rspo4 R-spondin 4 ISO RGD PMID:23151663 RGD:7365105 NCBI chrNW_004955596:265,282...295,283
Ensembl chrNW_004955596:265,466...295,116
JBrowse link
G Sfrp1 secreted frizzled related protein 1 ISO RGD PMID:23085770 RGD:7365107 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514
JBrowse link
G Sfrp2 secreted frizzled related protein 2 ISO RGD PMID:23085770 RGD:7365107 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321
JBrowse link
G Sfrp4 secreted frizzled related protein 4 ISO RGD PMID:23085770 RGD:7365107 NCBI chrNW_004955460:5,654,187...5,666,475
Ensembl chrNW_004955460:5,654,288...5,664,219
JBrowse link
G Sfrp5 secreted frizzled related protein 5 ISO RGD PMID:23085770 RGD:7365107 NCBI chrNW_004955507:3,836,607...3,841,910
Ensembl chrNW_004955507:3,836,607...3,841,910
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO RGD PMID:16793760 RGD:2302032 NCBI chrNW_004955495:2,021,671...2,105,155
Ensembl chrNW_004955495:2,021,566...2,105,397
JBrowse link
G Sost sclerostin ISO RGD PMID:23085770 RGD:7365107 NCBI chrNW_004955451:17,054,939...17,058,027
Ensembl chrNW_004955451:17,054,939...17,058,027
JBrowse link
G Sostdc1 sclerostin domain containing 1 ISO RGD PMID:23085770 RGD:7365107 NCBI chrNW_004955410:19,657,805...19,662,121
Ensembl chrNW_004955410:19,657,029...19,662,131
JBrowse link
G Tcf7 transcription factor 7 ISO RGD PMID:10528152 RGD:2301908 NCBI chrNW_004955408:5,362,423...5,388,684
Ensembl chrNW_004955408:5,362,084...5,388,527
JBrowse link
G Tcf7l1 transcription factor 7 like 1 ISO RGD PMID:10528152 RGD:2301908 NCBI chrNW_004955424:2,139,576...2,286,183
Ensembl chrNW_004955424:2,137,865...2,286,181
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO RGD PMID:10528152 RGD:2301908 NCBI chrNW_004955431:18,020,309...18,207,926
Ensembl chrNW_004955431:18,020,409...18,209,134
JBrowse link
G Tsc2 TSC complex subunit 2 ISO RGD PMID:12511557 RGD:1304267 NCBI chrNW_004955442:15,178,356...15,216,978
Ensembl chrNW_004955442:15,178,487...15,216,362
JBrowse link
G Wif1 WNT inhibitory factor 1 ISO RGD PMID:18432252 RGD:2293188 NCBI chrNW_004955458:11,755,147...11,834,047
Ensembl chrNW_004955458:11,754,120...11,834,047
JBrowse link
G Wls Wnt ligand secretion mediator ISO RGD PMID:23439944 RGD:7365109 NCBI chrNW_004955423:23,374,401...23,465,308
Ensembl chrNW_004955423:23,374,401...23,466,475
JBrowse link
G Wnt1 Wnt family member 1 ISO RGD PMID:18765832 PMID:20848229 RGD:13209023 RGD:2313743 NCBI chrNW_004955500:7,797,063...7,811,142
Ensembl chrNW_004955500:7,797,060...7,811,167
JBrowse link
G Wnt10a Wnt family member 10A ISO RGD PMID:18765832 RGD:2313743 NCBI chrNW_004955453:14,528,373...14,540,801
Ensembl chrNW_004955453:14,528,153...14,540,818
JBrowse link
G Wnt10b Wnt family member 10B ISO RGD PMID:16477437 PMID:18765832 RGD:2300029 RGD:2313743 NCBI chrNW_004955500:7,782,782...7,800,281
Ensembl chrNW_004955500:7,782,782...7,788,309
JBrowse link
G Wnt11 Wnt family member 11 ISO RGD PMID:18765832 RGD:2313743 NCBI chrNW_004955414:15,674,478...15,694,758
Ensembl chrNW_004955414:15,674,940...15,694,883
JBrowse link
G Wnt16 Wnt family member 16 ISO RGD PMID:18765832 RGD:2313743 NCBI chrNW_004955479:3,065,312...3,077,260
Ensembl chrNW_004955479:3,065,295...3,077,260
JBrowse link
G Wnt2 Wnt family member 2 ISO RGD PMID:18765832 RGD:2313743 NCBI chrNW_004955432:22,988,208...23,024,530
Ensembl chrNW_004955432:22,984,170...23,027,705
JBrowse link
G Wnt2b Wnt family member 2B ISO RGD PMID:18765832 RGD:2313743 NCBI chrNW_004955435:15,948,262...15,962,958
Ensembl chrNW_004955435:15,948,262...15,962,958
JBrowse link
G Wnt3a Wnt family member 3A ISO PID
RGD
PMID:15789446 PMID:18765832 PID:200077 RGD:2300202 RGD:2313743 NCBI chrNW_004955581:351,375...382,541
Ensembl chrNW_004955581:350,889...382,541
JBrowse link
G Wnt4 Wnt family member 4 ISO RGD PMID:18765832 RGD:2313743 NCBI chrNW_004955452:2,319,446...2,344,740
Ensembl chrNW_004955452:2,319,446...2,344,989
JBrowse link
G Wnt5a Wnt family member 5A ISO RGD PMID:18765832 RGD:2313743 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
G Wnt5b Wnt family member 5B ISO RGD PMID:18765832 RGD:2313743 NCBI chrNW_004955454:4,158,648...4,192,709
Ensembl chrNW_004955454:4,178,609...4,192,710
JBrowse link
G Wnt6 Wnt family member 6 ISO RGD PMID:18765832 RGD:2313743 NCBI chrNW_004955453:14,547,427...14,560,001
Ensembl chrNW_004955453:14,545,700...14,560,976
JBrowse link
G Wnt7a Wnt family member 7A ISO RGD PMID:16164600 PMID:18765832 RGD:1601222 RGD:2313743 NCBI chrNW_004955429:12,647,993...12,693,998
Ensembl chrNW_004955429:12,647,993...12,694,895
JBrowse link
G Wnt7b Wnt family member 7B ISO RGD PMID:15923619 PMID:16164600 PMID:18765832 RGD:1601222 RGD:2293491 RGD:2313743 NCBI chrNW_004955413:30,146,185...30,185,693
Ensembl chrNW_004955413:30,144,869...30,181,791
JBrowse link
G Wnt8a Wnt family member 8A ISO RGD PMID:18765832 RGD:2313743 NCBI chrNW_004955418:2,332,636...2,338,099
Ensembl chrNW_004955418:2,332,636...2,338,085
JBrowse link
G Wnt8b Wnt family member 8B ISO RGD PMID:18765832 RGD:2313743 NCBI chrNW_004955485:9,658,432...9,679,371
Ensembl chrNW_004955485:9,658,432...9,679,385
JBrowse link
G Wnt9a Wnt family member 9A ISO RGD PMID:16818445 PMID:18765832 RGD:2300156 RGD:2313743 NCBI chrNW_004955581:422,028...438,321
Ensembl chrNW_004955581:421,451...438,380
JBrowse link
G Wnt9b Wnt family member 9B ISO RGD PMID:18765832 RGD:2313743 NCBI chrNW_004955478:10,816,405...10,841,416
Ensembl chrNW_004955478:10,816,405...10,841,416
JBrowse link
G Znrf3 zinc and ring finger 3 ISO RGD PMID:23151663 RGD:7365105 NCBI chrNW_004955455:3,066,957...3,289,836
Ensembl chrNW_004955455:3,228,603...3,286,290
JBrowse link
Wnt signaling, non-canonical pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb2 arrestin beta 2 ISO PID PID:200020 NCBI chrNW_004955467:10,109,985...10,118,687
Ensembl chrNW_004955467:10,110,003...10,123,022
JBrowse link
G Camk2a calcium/calmodulin dependent protein kinase II alpha ISO PID PID:200020 NCBI chrNW_004955415:4,247,307...4,307,402
Ensembl chrNW_004955415:4,247,014...4,307,458
JBrowse link
G Cdc42 cell division cycle 42 ISO PID PID:200020 NCBI chrNW_004955452:2,255,940...2,299,042
Ensembl chrNW_004955452:2,255,117...2,299,042
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 ISO PID PID:200020 NCBI chrNW_004955444:17,859,999...18,067,623
Ensembl chrNW_004955444:17,858,771...18,067,248
JBrowse link
G Csnk1a1 casein kinase 1 alpha 1 ISO PID PID:200020 NCBI chrNW_004955415:4,921,356...4,966,705
Ensembl chrNW_004955415:4,921,852...4,966,705
JBrowse link
G Cthrc1 collagen triple helix repeat containing 1 ISO PID PID:200020 NCBI chrNW_004955417:27,520,420...27,525,907 JBrowse link
G Daam1 dishevelled associated activator of morphogenesis 1 ISO PID PID:200020 NCBI chrNW_004955466:12,954,557...13,129,483
Ensembl chrNW_004955466:12,954,242...13,127,076
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 ISO PID PID:200020 NCBI chrNW_004955486:9,464,390...9,469,984
Ensembl chrNW_004955486:9,464,313...9,469,984
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 ISO PID PID:200020 NCBI chrNW_004955467:9,675,912...9,683,996
Ensembl chrNW_004955467:9,675,912...9,683,996
JBrowse link
G Dvl3 dishevelled segment polarity protein 3 ISO PID PID:200020 NCBI chrNW_004955420:23,291,650...23,301,695
Ensembl chrNW_004955420:23,293,222...23,301,694
JBrowse link
G Flna filamin A ISO PID PID:200020 NCBI chrNW_004955580:874,233...895,172
Ensembl chrNW_004955580:874,233...895,232
JBrowse link
G Fzd2 frizzled class receptor 2 ISO PID PID:200020 NCBI chrNW_004955451:17,501,410...17,503,726 JBrowse link
G Fzd5 frizzled class receptor 5 ISO PID PID:200020 NCBI chrNW_004955457:7,282,403...7,288,918
Ensembl chrNW_004955457:7,282,403...7,288,918
JBrowse link
G Fzd6 frizzled class receptor 6 ISO PID PID:200020 NCBI chrNW_004955417:27,465,730...27,493,752
Ensembl chrNW_004955417:27,465,701...27,494,790
JBrowse link
G Fzd7 frizzled class receptor 7 ISO PID PID:200020 NCBI chrNW_004955457:12,729,277...12,733,057
Ensembl chrNW_004955457:12,731,279...12,732,979
JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 ISO PID PID:200020 NCBI chrNW_004955411:17,177,335...17,229,957
Ensembl chrNW_004955411:17,177,335...17,229,957
JBrowse link
G Mapk10 mitogen-activated protein kinase 10 ISO PID PID:200020 NCBI chrNW_004955474:3,451,656...3,772,405
Ensembl chrNW_004955474:3,624,679...3,772,458
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO PID PID:200020 NCBI chrNW_004955556:1,593,552...1,705,543
Ensembl chrNW_004955556:1,593,494...1,665,784
JBrowse link
G Mapk9 mitogen-activated protein kinase 9 ISO PID PID:200020 NCBI chrNW_004955408:391,094...430,638
Ensembl chrNW_004955408:391,094...430,981
JBrowse link
G Nfatc2 nuclear factor of activated T cells 2 ISO PID PID:200020 NCBI chrNW_004955445:7,035,876...7,153,199
Ensembl chrNW_004955445:7,035,876...7,153,237
JBrowse link
G Nlk nemo like kinase ISO PID PID:200020 NCBI chrNW_004955481:4,828,441...4,973,734
Ensembl chrNW_004955481:4,828,448...4,973,734
JBrowse link
G Pparg peroxisome proliferator activated receptor gamma ISO PID PID:200020 NCBI chrNW_004955429:14,814,690...14,936,869
Ensembl chrNW_004955429:14,873,908...14,937,387
JBrowse link
G Prkcz protein kinase C zeta ISO PID PID:200020 NCBI chrNW_004955486:8,947,579...9,021,702
Ensembl chrNW_004955486:8,947,579...9,021,702
JBrowse link
G Rac1 Rac family small GTPase 1 ISO PID PID:200020 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351
JBrowse link
G Rhoa ras homolog family member A ISO PID PID:200020 NCBI chrNW_004955532:1,300,821...1,347,453
Ensembl chrNW_004955532:1,300,462...1,347,451
JBrowse link
G Rock1 Rho associated coiled-coil containing protein kinase 1 ISO PID PID:200020 NCBI chrNW_004955402:9,752,101...9,864,317
Ensembl chrNW_004955402:9,750,730...9,864,317
JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 ISO PID PID:200020 NCBI chrNW_004955515:313,612...554,751
Ensembl chrNW_004955515:313,604...553,774
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO PID PID:200020 NCBI chrNW_004955588:290,497...338,438
Ensembl chrNW_004955588:290,168...338,426
JBrowse link
G Tab1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 ISO PID PID:200020 NCBI chrNW_004955413:25,290,733...25,315,267
Ensembl chrNW_004955413:25,290,828...25,313,969
JBrowse link
G Tab2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 ISO PID PID:200020 NCBI chrNW_004955439:11,826,469...11,903,103
Ensembl chrNW_004955439:11,826,469...11,903,103
JBrowse link
G Wnt5a Wnt family member 5A ISO PID PID:200020 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
G Wnt7a Wnt family member 7A ISO RGD PMID:18567805 RGD:4107045 NCBI chrNW_004955429:12,647,993...12,693,998
Ensembl chrNW_004955429:12,647,993...12,694,895
JBrowse link
G Yes1 YES proto-oncogene 1, Src family tyrosine kinase ISO PID PID:200020 NCBI chrNW_004955402:9,199,704...9,255,183
Ensembl chrNW_004955402:9,226,295...9,256,044
JBrowse link
Wnt signaling, the planar cell polarity pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin EGF LAG seven-pass G-type receptor 1 ISO RGD PMID:17226800 RGD:2293492 NCBI chrNW_004955413:30,455,194...30,561,124
Ensembl chrNW_004955413:30,457,030...30,561,124
JBrowse link
G Daam1 dishevelled associated activator of morphogenesis 1 ISO RGD PMID:17226800 RGD:2293492 NCBI chrNW_004955466:12,954,557...13,129,483
Ensembl chrNW_004955466:12,954,242...13,127,076
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 ISO RGD PMID:15608632 RGD:1581694 NCBI chrNW_004955486:9,464,390...9,469,984
Ensembl chrNW_004955486:9,464,313...9,469,984
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 ISO RGD PMID:17226800 RGD:2293492 NCBI chrNW_004955467:9,675,912...9,683,996
Ensembl chrNW_004955467:9,675,912...9,683,996
JBrowse link
G Fzd3 frizzled class receptor 3 ISO RGD PMID:17226800 RGD:2293492 NCBI chrNW_004955403:50,899,658...50,959,077
Ensembl chrNW_004955403:50,899,523...50,959,071
JBrowse link
G Fzd6 frizzled class receptor 6 ISO RGD PMID:17226800 RGD:2293492 NCBI chrNW_004955417:27,465,730...27,493,752
Ensembl chrNW_004955417:27,465,701...27,494,790
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 ISO RGD PMID:17226800 RGD:2293492 NCBI chrNW_004955500:1,897,899...1,990,791
Ensembl chrNW_004955500:1,897,912...1,990,875
JBrowse link
G Ptk7 protein tyrosine kinase 7 (inactive) ISO RGD PMID:17226800 RGD:2293492 NCBI chrNW_004955437:9,037,933...9,094,237
Ensembl chrNW_004955437:9,037,661...9,094,287
JBrowse link
G Rac1 Rac family small GTPase 1 ISO RGD PMID:15608632 RGD:1581694 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351
JBrowse link
G Rhoa ras homolog family member A ISO RGD PMID:15637299 RGD:2302030 NCBI chrNW_004955532:1,300,821...1,347,453
Ensembl chrNW_004955532:1,300,462...1,347,451
JBrowse link
G Scrib scribble planar cell polarity protein ISO RGD PMID:17226800 RGD:2293492 NCBI chrNW_004955454:2,461,526...2,482,734
Ensembl chrNW_004955454:2,461,760...2,482,098
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO RGD PMID:17226800 RGD:2293492 NCBI chrNW_004955468:12,162,084...12,189,322
Ensembl chrNW_004955468:12,161,843...12,189,547
JBrowse link
G Wnt7b Wnt family member 7B ISO RGD PMID:15608632 PMID:18177422 RGD:1581694 RGD:2292645 NCBI chrNW_004955413:30,146,185...30,185,693
Ensembl chrNW_004955413:30,144,869...30,181,791
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 3929
    signaling pathway 1888
      glycoconjugated protein signaling pathway 328
        altered glycoconjugated protein signaling pathway + 25
        glycoprotein signaling pathway + 210
        proteoglycan signaling pathway + 134
paths to the root