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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:retinol metabolic pathway
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Accession:PW:0000141 term browser browse the term
Definition:Those reactions involving retinol, a fat-soluble vitamin that is the dietary form of vitamin A and is important for bone growth and in vision. Precursors of retinol such as carotenoid or retinyl esters are derived from diet and are converted to retinal and retinol, respectively.
Synonyms:related_synonym: Retinoid metabolism and transport;   retinol metabolic process

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retinol metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 ISO RGD PMID:21718801 RGD:6484679 NCBI chrNW_004936559:7,177,887...7,312,660
Ensembl chrNW_004936559:7,177,904...7,312,741
JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO SMPDB SMP:00074 NCBI chrNW_004936503:8,869,073...8,953,726
Ensembl chrNW_004936503:8,868,961...8,918,532
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO RGD
SMPDB
PMID:12547725 RGD:1576367 SMP:00074 NCBI chrNW_004936471:19,175,997...19,263,335
Ensembl chrNW_004936471:19,175,992...19,263,335
JBrowse link
G Awat1 acyl-CoA wax alcohol acyltransferase 1 ISO SMPDB SMP:00074 NCBI chrNW_004936762:1,238,239...1,244,330
Ensembl chrNW_004936762:1,238,473...1,244,330
JBrowse link
G Bco1 beta-carotene oxygenase 1 ISO SMPDB
RGD
PMID:21569862 PMID:21718801 RGD:6484679 RGD:6903956 SMP:00074 NCBI chrNW_004936475:28,859,222...28,890,407
Ensembl chrNW_004936475:28,859,318...28,889,934
JBrowse link
G Cd36 CD36 molecule (CD36 blood group) ISO RGD PMID:21718801 RGD:6484679 NCBI chrNW_004936810:791,823...838,303
Ensembl chrNW_004936810:758,182...838,365
JBrowse link
G Dgat1 diacylglycerol O-acyltransferase 1 ISO SMPDB SMP:00074 NCBI chrNW_004936470:7,916,438...7,926,089
Ensembl chrNW_004936470:7,916,438...7,926,088
JBrowse link
G Dhrs3 dehydrogenase/reductase 3 ISO SMPDB SMP:00074 NCBI chrNW_004936474:1,237,177...1,270,299
Ensembl chrNW_004936474:1,235,962...1,269,510
JBrowse link
G Dhrs9 dehydrogenase/reductase 9 ISO SMPDB SMP:00074 NCBI chrNW_004936469:10,465,701...10,487,534
Ensembl chrNW_004936469:10,465,701...10,487,534
JBrowse link
G Dnajb11 DnaJ heat shock protein family (Hsp40) member B11 ISO SMPDB SMP:00074 NCBI chrNW_004936578:3,360,259...3,374,634
Ensembl chrNW_004936578:3,360,259...3,374,612
JBrowse link
G Erp29 endoplasmic reticulum protein 29 ISO SMPDB SMP:00074 NCBI chrNW_004936558:4,531,397...4,538,943
Ensembl chrNW_004936558:4,531,471...4,538,943
JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 ISO SMPDB SMP:00074 NCBI chrNW_004936492:10,513,908...10,528,281
Ensembl chrNW_004936492:10,513,908...10,528,285
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 ISO SMPDB SMP:00074 NCBI chrNW_004936487:13,348,465...13,352,717
Ensembl chrNW_004936487:13,348,465...13,352,717
JBrowse link
G Hyou1 hypoxia up-regulated 1 ISO SMPDB SMP:00074 NCBI chrNW_004936542:4,005,616...4,018,135
Ensembl chrNW_004936542:4,005,610...4,018,135
JBrowse link
G LOC101965278 retinol dehydrogenase 16 ISO SMPDB SMP:00074 NCBI chrNW_004936646:1,195,200...1,200,778
Ensembl chrNW_004936646:1,194,547...1,200,897
JBrowse link
G LOC101977861 cytochrome P450 26A1 ISO SMPDB SMP:00074 NCBI chrNW_004936601:1,810,572...1,815,927
Ensembl chrNW_004936601:1,809,992...1,814,074
JBrowse link
G Lrat lecithin retinol acyltransferase ISO SMPDB
RGD
PMID:21718801 RGD:6484679 SMP:00074 NCBI chrNW_004936576:1,491,480...1,498,568
Ensembl chrNW_004936576:1,492,297...1,501,917
JBrowse link
G Pdia2 protein disulfide isomerase family A member 2 ISO SMPDB SMP:00074 NCBI chrNW_004936501:634,034...637,177
Ensembl chrNW_004936501:634,118...637,000
JBrowse link
G Pdia4 protein disulfide isomerase family A member 4 ISO SMPDB SMP:00074 NCBI chrNW_004936527:5,189,189...5,210,621
Ensembl chrNW_004936527:5,188,463...5,210,629
JBrowse link
G Pdia6 protein disulfide isomerase family A member 6 ISO SMPDB SMP:00074 NCBI chrNW_004936532:6,865,994...6,887,396
Ensembl chrNW_004936532:6,865,994...6,881,475
JBrowse link
G Plb1 phospholipase B1 ISO RGD PMID:8117729 PMID:21718801 RGD:6484679 RGD:6903951 NCBI chrNW_004936493:4,112,632...4,210,882
Ensembl chrNW_004936493:4,112,858...4,232,492
JBrowse link
G Pnpla4 patatin like phospholipase domain containing 4 ISO SMPDB SMP:00074 NCBI chrNW_004936644:1,091,794...1,113,621
Ensembl chrNW_004936644:1,093,388...1,112,557
JBrowse link
G Ppib peptidylprolyl isomerase B ISO SMPDB SMP:00074 NCBI chrNW_004936471:24,633,769...24,640,246
Ensembl chrNW_004936471:24,632,311...24,640,316
JBrowse link
G Rbp2 retinol binding protein 2 ISO RGD PMID:21718801 RGD:6484679 NCBI chrNW_004936540:1,547,406...1,571,374
Ensembl chrNW_004936540:1,547,386...1,571,430
JBrowse link
G Rdh11 retinol dehydrogenase 11 ISO SMPDB SMP:00074 NCBI chrNW_004936495:11,065,946...11,082,104
Ensembl chrNW_004936495:11,066,660...11,082,044
JBrowse link
G Rdh12 retinol dehydrogenase 12 ISO SMPDB SMP:00074 NCBI chrNW_004936495:11,111,247...11,121,976
Ensembl chrNW_004936495:11,111,105...11,121,341
JBrowse link
G Rdh8 retinol dehydrogenase 8 ISO SMPDB SMP:00074 NCBI chrNW_004936659:439,541...445,645 JBrowse link
G Retsat retinol saturase ISO SMPDB SMP:00074 NCBI chrNW_004936712:1,826,813...1,837,048
Ensembl chrNW_004936712:1,826,923...1,841,141
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO SMPDB SMP:00074 NCBI chrNW_004936591:3,347,346...3,368,062
Ensembl chrNW_004936591:3,347,272...3,368,015
JBrowse link
G Scarb1 scavenger receptor class B member 1 ISO RGD PMID:21718801 RGD:6484679 NCBI chrNW_004936558:530,828...555,098
Ensembl chrNW_004936558:530,828...552,892
JBrowse link
G Sdf2l1 stromal cell derived factor 2 like 1 ISO SMPDB SMP:00074 NCBI chrNW_004936619:2,049,920...2,051,944
Ensembl chrNW_004936619:2,049,922...2,051,944
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 3945
    classic metabolic pathway 973
      metabolic pathway pertinent to the brain 81
        retinoid metabolic pathway 48
          retinol metabolic pathway 31
Path 2
Term Annotations click to browse term
  pathway 3945
    regulatory pathway 2439
      homeostasis pathway 1275
        organic chemical homeostasis pathway 353
          vitamin homeostasis 93
            vitamin A homeostasis 93
              retinoid metabolic pathway 48
                retinol metabolic pathway 31
paths to the root