PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml ).
Term: retinol metabolic pathway
Accession: PW:0000141
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Definition: Those reactions involving retinol, a fat-soluble vitamin that is the dietary form of vitamin A and is important for bone growth and in vision. Precursors of retinol such as carotenoid or retinyl esters are derived from diet and are converted to retinal and retinol, respectively.
Synonyms: related_synonym: Retinoid metabolism and transport; retinol metabolic process
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Abca1
ATP binding cassette subfamily A member 1
ISO
RGD
PMID:21718801
RGD:6484679
NCBI chr 5:72,473,676...72,596,563
Ensembl chr 5:67,681,297...67,801,170
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Adh4
alcohol dehydrogenase 4 (class II), pi polypeptide
IEA
KEGG
rno:00830
NCBI chr 2:229,622,092...229,640,120
Ensembl chr 2:226,947,466...226,987,591
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Adh5
alcohol dehydrogenase 5 (class III), chi polypeptide
IEA
KEGG
rno:00830
NCBI chr 2:229,648,557...229,660,964
Ensembl chr 2:226,947,466...226,987,591
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Adh6
alcohol dehydrogenase 6 (class V)
IEA
KEGG
rno:00830
NCBI chr 2:226,903,208...226,934,564
Ensembl chr 2:226,903,250...226,934,534
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Adh7
alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
IEA
KEGG
rno:00830
NCBI chr 2:229,422,125...229,436,584
Ensembl chr 2:226,741,788...226,763,182
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Akr1b10
aldo-keto reductase family 1 member B10
IDA ISO
RGD
PMID:20709016 PMID:16970545
RGD:6903952 , RGD:6903957
NCBI chr 4:64,005,632...64,027,860
Ensembl chr 4:63,040,169...63,053,852
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Aldh1a1
aldehyde dehydrogenase 1 family, member A1
ISO
SMPDB
SMP:00074
NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:218,042,127...218,152,961
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Aldh1a2
aldehyde dehydrogenase 1 family, member A2
IDA IEA ISO
KEGG SMPDB RGD
PMID:12547725
SMP:00074 rno:00830, RGD:1576367
NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:71,877,850...71,957,107
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Awat1
acyl-CoA wax alcohol acyltransferase 1
ISO
SMPDB
SMP:00074
NCBI chr X:65,668,205...65,674,450
Ensembl chr X:65,668,205...65,674,450
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Awat2
acyl-CoA wax alcohol acyltransferase 2
IEA
KEGG
rno:00830
NCBI chr X:65,481,676...65,490,562
Ensembl chr X:65,481,929...65,527,625
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Bco1
beta-carotene oxygenase 1
ISO TAS IEA
KEGG SMPDB RGD
PMID:21569862 PMID:21718801
SMP:00074 rno:00830, RGD:6903956 , RGD:6484679
NCBI chr19:62,058,061...62,094,923
Ensembl chr19:45,149,265...45,186,101
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Cd36
CD36 molecule
ISO
RGD
PMID:21718801
RGD:6484679
NCBI chr 4:18,209,088...18,302,142
Ensembl chr 4:17,354,466...17,513,903
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Cyp1a1
cytochrome P450, family 1, subfamily a, polypeptide 1
IEA
KEGG
rno:00830
NCBI chr 8:66,991,940...66,998,014
Ensembl chr 8:58,096,077...58,102,125
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Cyp1a2
cytochrome P450, family 1, subfamily a, polypeptide 2
IEA
KEGG
rno:00830
NCBI chr 8:66,971,261...66,978,149
Ensembl chr 8:58,075,367...58,082,312
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Cyp26a1
cytochrome P450, family 26, subfamily a, polypeptide 1
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr 1:244,883,822...244,887,657
Ensembl chr 1:235,471,298...235,475,204
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Cyp26b1
cytochrome P450, family 26, subfamily b, polypeptide 1
IEA
KEGG
rno:00830
NCBI chr 4:118,599,356...118,616,176
Ensembl chr 4:117,041,808...117,058,628
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Cyp26c1
cytochrome P450, family 26, subfamily C, polypeptide 1
IEA
KEGG
rno:00830
NCBI chr 1:244,870,412...244,881,610
Ensembl chr 1:235,459,356...235,466,842
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Cyp2a1
cytochrome P450, family 2, subfamily a, polypeptide 1
IEA
KEGG
rno:00830
NCBI chr 1:91,359,278...91,372,554
Ensembl chr 1:82,231,611...82,244,887
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Cyp2a2
cytochrome P450, family 2, subfamily a, polypeptide 2
IEA
KEGG
rno:00830
NCBI chr 1:91,391,492...91,417,158
Ensembl chr 1:82,263,833...82,289,487
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Cyp2a3
cytochrome P450, family 2, subfamily a, polypeptide 3
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr 1:82,171,914...82,179,980
Ensembl chr 1:82,169,949...82,179,979
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Cyp2b1
cytochrome P450, family 2, subfamily b, polypeptide 1
IEA
KEGG
rno:00830
NCBI chr 1:90,646,098...90,669,762
Ensembl chr 1:81,518,408...81,542,052
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Cyp2b12
cytochrome P450, family 2, subfamily b, polypeptide 12
IEA
KEGG
rno:00830
NCBI chr 1:82,007,609...82,019,409
Ensembl chr 1:82,007,609...82,080,480
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Cyp2b2
cytochrome P450, family 2, subfamily b, polypeptide 2
IEA
KEGG
rno:00830
NCBI chr 1:90,722,243...90,736,272
Ensembl chr 1:81,594,555...81,608,566
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Cyp2b21
cytochrome P450, family 2, subfamily b, polypeptide 21
IEA
KEGG
rno:00830
NCBI chr 1:81,886,097...81,915,066
Ensembl chr 1:81,886,098...81,915,066
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Cyp2b3
cytochrome P450, family 2, subfamily b, polypeptide 3
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr 1:90,780,468...90,859,852
Ensembl chr 1:81,652,787...81,732,143
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Cyp2c11
cytochrome P450, subfamily 2, polypeptide 11
IEA
KEGG
rno:00830
NCBI chr 1:246,175,216...246,211,445
Ensembl chr 1:236,762,842...236,799,066
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Cyp2c12
cytochrome P450, family 2, subfamily c, polypeptide 12
IEA
KEGG
rno:00830
NCBI chr 1:238,699,859...238,757,011
Ensembl chr 1:238,699,854...238,757,019
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Cyp2c13
cytochrome P450, family 2, subfamily c, polypeptide 13
IEA
KEGG
rno:00830
NCBI chr 1:238,786,764...238,867,195
Ensembl chr 1:238,786,765...238,867,191
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Cyp2c22
cytochrome P450, family 2, subfamily c, polypeptide 22
IEA
KEGG
rno:00830
NCBI chr 1:238,991,698...239,031,323
Ensembl chr 1:238,991,610...239,021,738
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Cyp2c23
cytochrome P450, family 2, subfamily c, polypeptide 23
IEA
KEGG
rno:00830
NCBI chr 1:242,889,218...242,913,869
Ensembl chr 1:242,889,224...242,913,858
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Cyp2c7
cytochrome P450, family 2, subfamily c, polypeptide 7
IEA
KEGG
rno:00830
NCBI chr 1:247,966,295...248,022,393
Ensembl chr 1:237,332,659...237,388,709
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Cyp3a18
cytochrome P450, family 3, subfamily a, polypeptide 18
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr12:13,994,312...14,044,185
Ensembl chr12:8,880,528...8,930,381
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Cyp3a2
cytochrome P450, family 3, subfamily a, polypeptide 2
IEA
KEGG
rno:00830
NCBI chr12:14,321,771...14,343,886
Ensembl chr12:9,015,383...9,285,008
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Cyp3a23-3a1
cytochrome P450, family 3, subfamily a, polypeptide 23-polypeptide 1
IEA
KEGG
rno:00830
NCBI chr12:14,369,950...14,398,803
Ensembl chr12:9,254,475...9,285,030 Ensembl chr12:9,254,475...9,285,030
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Cyp3a9
cytochrome P450, family 3, subfamily a, polypeptide 9
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr12:21,919,955...21,960,160
Ensembl chr12:16,806,207...16,846,422
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Cyp4a1
cytochrome P450, family 4, subfamily a, polypeptide 1
IEA
KEGG
rno:00830
NCBI chr 5:134,360,096...134,374,233
Ensembl chr 5:129,123,336...129,137,464
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Cyp4a2
cytochrome P450, family 4, subfamily a, polypeptide 2
IEA
KEGG
rno:00830
NCBI chr 5:128,922,355...128,934,188
Ensembl chr 5:128,923,615...128,934,165
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Cyp4a3
cytochrome P450, family 4, subfamily a, polypeptide 3
IEA
KEGG
rno:00830
NCBI chr 5:129,097,571...129,115,488
Ensembl chr 5:129,097,926...129,115,463
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Cyp4a8
cytochrome P450, family 4, subfamily a, polypeptide 8
IEA
KEGG
rno:00830
NCBI chr 5:128,702,130...128,733,476
Ensembl chr 5:128,702,131...128,733,476
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Dgat1
diacylglycerol O-acyltransferase 1
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr 7:110,104,514...110,119,091
Ensembl chr 7:108,218,524...108,234,299
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Dhrs3
dehydrogenase/reductase 3
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr 5:162,031,853...162,065,655
Ensembl chr 5:156,747,962...156,782,417
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Dhrs4
dehydrogenase/reductase 4
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr15:28,966,544...28,978,135
Ensembl chr15:28,966,553...28,978,127
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Dhrs9
dehydrogenase/reductase 9
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr 3:74,553,357...74,579,535
Ensembl chr 3:54,147,803...54,220,241
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Dnajb11
DnaJ heat shock protein family (Hsp40) member B11
ISO
SMPDB
SMP:00074
NCBI chr11:91,656,334...91,672,800
Ensembl chr11:78,150,429...78,180,407
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Erp29
endoplasmic reticulum protein 29
ISO
SMPDB
SMP:00074
NCBI chr12:40,750,177...40,756,607
Ensembl chr12:35,089,707...35,096,376
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Hsp90b1
heat shock protein 90 beta family member 1
ISO
SMPDB
SMP:00074
NCBI chr 7:22,997,962...23,012,293
Ensembl chr 7:21,110,457...21,124,788
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Hspa5
heat shock protein family A (Hsp70) member 5
ISO
SMPDB
SMP:00074
NCBI chr 3:38,453,016...38,457,475
Ensembl chr 3:18,055,405...18,059,891
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Hyou1
hypoxia up-regulated 1
ISO
SMPDB
SMP:00074
NCBI chr 8:53,602,882...53,614,998
Ensembl chr 8:44,706,263...44,718,186
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Lrat
lecithin retinol acyltransferase
TAS IEA ISO
KEGG SMPDB RGD
PMID:21718801
SMP:00074 rno:00830, RGD:6484679
NCBI chr 2:170,562,148...170,571,212
Ensembl chr 2:168,266,877...168,273,619
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Pdia2
protein disulfide isomerase family A, member 2
ISO
SMPDB
SMP:00074
NCBI chr10:15,215,824...15,218,937
Ensembl chr10:15,215,824...15,220,931
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Pdia4
protein disulfide isomerase family A, member 4
ISO
SMPDB
SMP:00074
NCBI chr 4:78,134,144...78,153,191
Ensembl chr 4:76,803,198...76,822,107
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Pdia6
protein disulfide isomerase family A, member 6
ISO
SMPDB
SMP:00074
NCBI chr 6:45,791,704...45,808,947
Ensembl chr 6:40,062,926...40,080,613
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Plb1
phospholipase B1
IDA TAS
RGD
PMID:8117729 PMID:21718801
RGD:6903951 , RGD:6484679
NCBI chr 6:29,807,127...29,945,607
Ensembl chr 6:24,089,214...24,210,117
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Pnlip
pancreatic lipase
TAS
RGD
PMID:21718801
RGD:6484679
NCBI chr 1:267,760,073...267,797,797
Ensembl chr 1:257,798,581...257,811,654
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Pnliprp2
pancreatic lipase related protein 2
ISO
RGD
PMID:21718801
RGD:6484679
NCBI chr 1:267,883,906...267,902,572
Ensembl chr 1:257,897,766...257,916,434
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Pnpla4
patatin like phospholipase domain containing 4
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr X:46,200,351...46,205,517
Ensembl chr X:42,305,373...42,318,552
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Ppib
peptidylprolyl isomerase B
ISO
SMPDB
SMP:00074
NCBI chr 8:75,498,966...75,504,823
Ensembl chr 8:66,603,861...66,630,428
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Rbp2
retinol binding protein 2
ISO
RGD
PMID:21718801
RGD:6484679
NCBI chr 8:107,958,670...107,983,850
Ensembl chr 8:99,079,104...99,104,473
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Rdh10
retinol dehydrogenase 10
IEA
KEGG
rno:00830
NCBI chr 5:7,969,931...7,998,834
Ensembl chr 5:3,188,445...3,215,572
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Rdh11
retinol dehydrogenase 11
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr 6:103,712,373...103,728,247
Ensembl chr 6:97,979,378...97,995,252
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Rdh12
retinol dehydrogenase 12
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr 6:98,015,465...98,028,388
Ensembl chr 6:98,015,465...98,028,388
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Rdh16
retinol dehydrogenase 16
ISO
SMPDB
SMP:00074
NCBI chr 7:65,499,763...65,510,304
Ensembl chr 7:63,597,536...63,624,124
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Rdh5
retinol dehydrogenase 5
IEA
KEGG
rno:00830
NCBI chr 7:1,912,120...1,931,836
Ensembl chr 7:1,340,934...1,351,558
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Rdh7
retinol dehydrogenase 7
IEA
KEGG
rno:00830
NCBI chr 7:63,676,016...63,689,375
Ensembl chr 7:63,675,579...63,689,392
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Rdh8
retinol dehydrogenase 8
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr 8:19,353,191...19,360,462
Ensembl chr 8:19,353,191...19,360,462
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Retsat
retinol saturase
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr 4:106,211,459...106,220,222
Ensembl chr 4:104,653,155...104,668,310
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Rpe65
retinoid isomerohydrolase RPE65
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr 2:251,425,228...251,457,209
Ensembl chr 2:248,766,612...248,798,403
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Scarb1
scavenger receptor class B, member 1
ISO
RGD
PMID:21718801
RGD:6484679
NCBI chr12:36,957,302...37,023,982
Ensembl chr12:31,296,156...31,362,647
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Sdf2l1
stromal cell-derived factor 2-like 1
ISO
SMPDB
SMP:00074
NCBI chr11:97,376,878...97,379,120
Ensembl chr11:83,872,659...83,874,902
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Ugt1a1
UDP glucuronosyltransferase family 1 member A1
IEA ISO
KEGG SMPDB
SMP:00074 rno:00830
NCBI chr 9:96,249,143...96,256,264
Ensembl chr 9:88,713,184...88,808,465
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Ugt1a2
UDP glucuronosyltransferase 1 family, polypeptide A2
IEA
KEGG
rno:00830
NCBI chr 9:96,239,019...96,256,264
Ensembl chr 9:88,713,184...88,808,465
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Ugt1a3
UDP glycosyltransferase 1 family, polypeptide A3
IEA
KEGG
rno:00830
NCBI chr 9:96,228,134...96,256,264
Ensembl chr 9:88,713,184...88,808,465
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Ugt1a5
UDP glucuronosyltransferase family 1 member A5
IEA
KEGG
rno:00830
NCBI chr 9:96,210,053...96,256,264
Ensembl chr 9:88,713,184...88,808,465
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Ugt1a6
UDP glucuronosyltransferase family 1 member A6
IEA
KEGG
rno:00830
NCBI chr 9:96,195,018...96,256,264
Ensembl chr 9:88,713,184...88,808,465
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Ugt1a7c
UDP glucuronosyltransferase 1 family, polypeptide A7C
IEA
KEGG
rno:00830
NCBI chr 9:96,187,382...96,256,264
Ensembl chr 9:88,713,184...88,808,465
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Ugt1a8
UDP glucuronosyltransferase family 1 member A8
IEA
KEGG
rno:00830
NCBI chr 9:88,727,094...88,808,465
Ensembl chr 9:88,713,184...88,808,465
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Ugt1a9
UDP glucuronosyltransferase family 1 member A9
IEA
KEGG
rno:00830
NCBI chr 9:96,144,786...96,256,264
Ensembl chr 9:88,713,184...88,808,465
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Ugt2a1
UDP glucuronosyltransferase family 2 member A1
IEA
KEGG
rno:00830
NCBI chr14:20,797,262...20,825,111
Ensembl chr14:20,517,951...20,545,531
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Ugt2a3
UDP glucuronosyltransferase family 2 member A3
IEA
KEGG
rno:00830
NCBI chr14:20,572,793...20,590,795
Ensembl chr14:20,572,808...20,590,729
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Ugt2b
UDP glycosyltransferase 2 family, polypeptide B
IEA
KEGG
rno:00830
NCBI chr14:20,985,449...21,006,267
Ensembl chr14:20,630,250...20,651,776
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Ugt2b1
UDP glucuronosyltransferase 2 family, polypeptide B1
IEA
KEGG
rno:00830
NCBI chr14:21,378,882...21,390,631
Ensembl chr14:21,024,006...21,035,986
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Ugt2b37
UDP-glucuronosyltransferase 2 family, member 37
IEA
KEGG
rno:00830
NCBI chr14:20,817,285...20,833,917
Ensembl chr14:20,817,285...20,833,917
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