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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:transcription pathway
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Accession:PW:0000100 term browser browse the term
Definition:The pathways governing and/or regulating DNA transcription and gene expression. DNA transcription into coding and non-coding RNA is accomplished by one prokaryotic and several eukaryotic RNA polymerases. Transcription-coupled repair handles DNA lesions that interfere with the progression of RNA polymerases. Splicing of nascent RNA is thought to be predominantly co-transcriptional. Signaling pathways mediated by various transcription factors are involved in the regulation of gene expression.
Synonyms:related_synonym: Generic Transcription Pathway;   transcription, DNA-templated


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3'-end pre-mRNA processing pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421 		JBrowse link
G Cpsf1 cleavage and polyadenylation specific factor 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 7:108,319,429...108,330,018
Ensembl chr 7:108,319,434...108,329,934 		JBrowse link
G Cpsf2 cleavage and polyadenylation specific factor 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 6:121,123,941...121,152,756
Ensembl chr 6:121,120,569...121,151,921 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128 		JBrowse link
G Cpsf4 cleavage and polyadenylation specific factor 4 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr12:9,429,765...9,445,586
Ensembl chr12:9,429,523...9,445,586 		JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122 		JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 1:207,167,690...207,191,938
Ensembl chr 1:207,167,859...207,191,905 		JBrowse link
G Cstf1 cleavage stimulation factor subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 3:161,144,522...161,156,294
Ensembl chr 3:161,144,548...161,156,300 		JBrowse link
G Cstf2 cleavage stimulation factor subunit 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr  X:97,253,559...97,279,476
Ensembl chr  X:97,253,586...97,279,476 		JBrowse link
G Cstf2t cleavage stimulation factor subunit 2, tau variant ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 1:228,952,617...228,956,183
Ensembl chr 1:228,952,504...228,955,873 		JBrowse link
G Cstf3 cleavage stimulation factor subunit 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 3:90,966,415...91,037,669
Ensembl chr 3:90,966,354...91,042,196 		JBrowse link
G Dxo decapping exoribonuclease ISO RGD PMID:21957020 RGD:9681741 NCBI chr20:3,993,322...3,995,484
Ensembl chr20:3,993,327...3,995,494 		JBrowse link
G Fip1l1 factor interacting with PAPOLA and CPSF1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr14:33,615,210...33,675,742
Ensembl chr14:33,617,720...33,675,708 		JBrowse link
G Nudt21 nudix hydrolase 21 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682 		JBrowse link
G Pabpn1 poly(A) binding protein, nuclear 1 ISO RGD PMID:24243805 RGD:9681742 NCBI chr15:28,368,100...28,372,712
Ensembl chr15:28,368,100...28,372,703 		JBrowse link
G Papola poly (A) polymerase alpha ISO RGD PMID:24243805 RGD:9681742 NCBI chr 6:124,682,015...124,734,706
Ensembl chr 6:124,682,105...124,734,468 		JBrowse link
G Papolb poly(A) polymerase beta ISO RGD PMID:24243805 RGD:9681742 NCBI chr12:12,044,275...12,046,621
Ensembl chr12:12,044,480...12,046,656 		JBrowse link
G Papolg poly(A) polymerase gamma ISO RGD PMID:24243805 RGD:9681742 NCBI chr14:97,827,712...97,861,024
Ensembl chr14:97,827,712...97,861,024 		JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 1:146,694,045...146,724,030
Ensembl chr 1:146,697,646...146,724,124 		JBrowse link
G Sympk symplekin scaffold protein ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 1:78,672,372...78,700,684
Ensembl chr 1:78,672,378...78,700,684 		JBrowse link
G Wdr33 WD repeat domain 33 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr18:23,432,233...23,535,460
Ensembl chr18:23,432,191...23,468,597 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 ISO RGD PMID:21957020 RGD:9681741 NCBI chr 3:134,436,916...134,509,308
Ensembl chr 3:134,437,109...134,509,306 		JBrowse link
5'-end pre-mRNA capping pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncbp1 nuclear cap binding protein subunit 1 ISO RGD PMID:24354960 RGD:9684851 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 ISO RGD PMID:24354960 RGD:9684851 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885 		JBrowse link
G Ramac RNA guanine-7 methyltransferase activating subunit ISO RGD PMID:24354960 RGD:9684851 NCBI chr 1:135,708,529...135,714,417
Ensembl chr 1:135,708,535...135,722,151 		JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase ISO RGD PMID:24354960 RGD:9684851 NCBI chr 5:47,706,929...47,913,297
Ensembl chr 5:47,706,799...47,913,295 		JBrowse link
G Rnmt RNA (guanine-7-) methyltransferase ISO RGD PMID:24354960 RGD:9684851 NCBI chr18:61,886,230...61,909,775
Ensembl chr18:61,886,292...61,909,775 		JBrowse link
aldosterone signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a1 ATPase Na+/K+ transporting subunit alpha 1 IEA KEGG rno:04960 NCBI chr 2:189,020,722...189,048,826
Ensembl chr 2:189,020,722...189,048,837 		JBrowse link
G Atp1a2 ATPase Na+/K+ transporting subunit alpha 2 IEA KEGG rno:04960 NCBI chr13:84,729,597...84,754,544
Ensembl chr13:84,729,601...84,754,544 		JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 IEA KEGG rno:04960 NCBI chr 1:80,572,790...80,601,936
Ensembl chr 1:80,572,796...80,601,918 		JBrowse link
G Atp1a4 ATPase Na+/K+ transporting subunit alpha 4 IEA KEGG rno:04960 NCBI chr13:84,683,766...84,719,790
Ensembl chr13:84,683,768...84,719,687 		JBrowse link
G Atp1b1 ATPase Na+/K+ transporting subunit beta 1 IEA KEGG rno:04960 NCBI chr13:76,786,580...76,807,096
Ensembl chr13:76,786,578...76,807,459 		JBrowse link
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 IEA KEGG rno:04960 NCBI chr10:54,318,698...54,324,933
Ensembl chr10:54,318,701...54,324,933 		JBrowse link
G Atp1b3 ATPase Na+/K+ transporting subunit beta 3 IEA KEGG rno:04960 NCBI chr 8:96,910,265...96,941,592
Ensembl chr 8:96,910,309...96,941,598
Ensembl chr 8:96,910,309...96,941,598 		JBrowse link
G Atp1b4 ATPase Na+/K+ transporting family member beta 4 IEA KEGG rno:04960 NCBI chr  X:117,087,284...117,108,023
Ensembl chr  X:117,057,423...117,108,020 		JBrowse link
G Casp8ap2 caspase 8 associated protein 2 ISO RGD PMID:21784126 RGD:7421504 NCBI chr 5:47,014,501...47,052,276
Ensembl chr 5:47,014,667...47,052,275 		JBrowse link
G Crebbp CREB binding protein ISO RGD PMID:21784126 RGD:7421504 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Daxx death-domain associated protein ISO RGD PMID:21784126 RGD:7421504 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843 		JBrowse link
G Dhx9 DExH-box helicase 9 ISO RGD PMID:21784126 RGD:7421504 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Ell elongation factor for RNA polymerase II ISO RGD PMID:21784126 RGD:7421504 NCBI chr16:18,843,775...18,891,484
Ensembl chr16:18,843,780...18,891,118 		JBrowse link
G Faf1 Fas associated factor 1 ISO RGD PMID:21784126 RGD:7421504 NCBI chr 5:124,426,032...124,790,014
Ensembl chr 5:124,426,062...124,789,977 		JBrowse link
G Fkbp4 FKBP prolyl isomerase 4 ISO RGD PMID:21784126 RGD:7421504 NCBI chr 4:161,703,379...161,711,833
Ensembl chr 4:161,703,379...161,711,833 		JBrowse link
G Fkbp5 FKBP prolyl isomerase 5 ISO RGD PMID:21784126 RGD:7421504 NCBI chr20:6,457,207...6,575,404
Ensembl chr20:6,457,216...6,541,674 		JBrowse link
G Fxyd2 FXYD domain-containing ion transport regulator 2 IEA KEGG rno:04960 NCBI chr 8:45,712,901...45,720,032
Ensembl chr 8:45,712,903...45,720,203 		JBrowse link
G Fxyd4 FXYD domain-containing ion transport regulator 4 IEA KEGG rno:04960 NCBI chr 4:151,109,779...151,113,659
Ensembl chr 4:151,109,779...151,113,637 		JBrowse link
G Hsd11b1 hydroxysteroid 11-beta dehydrogenase 1 IEA KEGG rno:04960 NCBI chr13:104,728,539...104,798,884
Ensembl chr13:104,728,539...104,788,687 		JBrowse link
G Hsd11b2 hydroxysteroid 11-beta dehydrogenase 2 IEA KEGG rno:04960 NCBI chr19:33,397,656...33,402,899
Ensembl chr19:33,397,656...33,402,899 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 ISO RGD PMID:21784126 RGD:7421504 NCBI chr 6:129,702,376...129,707,907
Ensembl chr 6:129,702,383...129,707,268 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 ISO RGD PMID:21784126 RGD:7421504 NCBI chr 9:15,432,986...15,438,358
Ensembl chr 9:15,433,691...15,438,488 		JBrowse link
G Igf1 insulin-like growth factor 1 IEA KEGG rno:04960 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296 		JBrowse link
G Ins1 insulin 1 IEA KEGG rno:04960 NCBI chr 1:251,244,973...251,245,540
Ensembl chr 1:251,244,973...251,245,536 		JBrowse link
G Ins2 insulin 2 IEA KEGG rno:04960 NCBI chr 1:197,843,277...197,992,522
Ensembl chr 1:197,843,281...197,864,775 		JBrowse link
G Insr insulin receptor IEA KEGG rno:04960 NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883 		JBrowse link
G Irs1 insulin receptor substrate 1 IEA KEGG rno:04960 NCBI chr 9:83,552,964...83,605,797
Ensembl chr 9:83,548,944...83,606,122 		JBrowse link
G Irs2 insulin receptor substrate 2 IEA KEGG rno:04960 NCBI chr16:78,488,249...78,512,482
Ensembl chr16:78,485,045...78,512,482 		JBrowse link
G Irs3 insulin receptor substrate 3 IEA KEGG rno:04960 NCBI chr12:19,053,148...19,055,286
Ensembl chr12:19,053,148...19,055,286 		JBrowse link
G Irs4 insulin receptor substrate 4 IEA KEGG rno:04960 NCBI chr  X:105,344,020...105,360,004 JBrowse link
G Jak2 Janus kinase 2 IMP RGD PMID:15932931 RGD:1641841 NCBI chr 1:226,995,334...227,054,381
Ensembl chr 1:226,995,334...227,054,189 		JBrowse link
G Kcnj1 potassium inwardly-rectifying channel, subfamily J, member 1 IEA KEGG rno:04960 NCBI chr 8:30,779,883...30,808,607
Ensembl chr 8:30,753,617...30,813,796 		JBrowse link
G Kras KRAS proto-oncogene, GTPase IEA KEGG rno:04960 NCBI chr 4:178,185,418...178,218,484 JBrowse link
G Mapk1 mitogen activated protein kinase 1 IEA KEGG rno:04960 NCBI chr11:83,957,813...84,023,629
Ensembl chr11:83,957,813...84,023,616 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 IEA KEGG rno:04960 NCBI chr 1:181,366,646...181,372,863
Ensembl chr 1:181,366,637...181,372,863 		JBrowse link
G Ncoa1 nuclear receptor coactivator 1 ISO RGD PMID:21784126 RGD:7421504 NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664 		JBrowse link
G Ncoa2 nuclear receptor coactivator 2 ISO RGD PMID:21784126 RGD:7421504 NCBI chr 5:5,835,642...6,069,693
Ensembl chr 5:5,835,706...6,067,451 		JBrowse link
G Ncor1 nuclear receptor co-repressor 1 ISO RGD PMID:21784126 RGD:7421504 NCBI chr10:46,999,536...47,142,294
Ensembl chr10:46,999,536...47,141,032 		JBrowse link
G Ncor2 nuclear receptor co-repressor 2 ISO RGD PMID:21784126 RGD:7421504 NCBI chr12:31,466,418...31,628,319
Ensembl chr12:31,466,412...31,628,319 		JBrowse link
G Nedd4l NEDD4 like E3 ubiquitin protein ligase IEA KEGG rno:04960 NCBI chr18:58,393,759...58,726,709
Ensembl chr18:58,393,509...58,723,137 		JBrowse link
G Nfyc nuclear transcription factor Y subunit gamma ISO RGD PMID:21784126 RGD:7421504 NCBI chr 5:134,336,802...134,405,372
Ensembl chr 5:134,336,808...134,405,377 		JBrowse link
G Nherf2 NHERF family PDZ scaffold protein 2 IEA KEGG rno:04960 NCBI chr10:13,662,461...13,672,975
Ensembl chr10:13,662,461...13,673,049 		JBrowse link
G Nr3c2 nuclear receptor subfamily 3, group C, member 2 IEA
ISO		 KEGG
RGD		 PMID:21784126 rno:04960, RGD:7421504 NCBI chr19:30,715,634...31,059,885
Ensembl chr19:30,715,648...31,059,885 		JBrowse link
G Pdpk1 3-phosphoinositide dependent protein kinase-1 IEA KEGG rno:04960 NCBI chr10:13,105,435...13,182,664
Ensembl chr10:13,105,498...13,174,623 		JBrowse link
G Pias1 protein inhibitor of activated STAT, 1 ISO RGD PMID:21784126 RGD:7421504 NCBI chr 8:63,338,150...63,451,670
Ensembl chr 8:63,338,150...63,438,905 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha IEA KEGG rno:04960 NCBI chr 2:115,175,275...115,249,034
Ensembl chr 2:115,174,984...115,249,032 		JBrowse link
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta IEA KEGG rno:04960 NCBI chr 8:99,594,600...99,699,772
Ensembl chr 8:99,594,644...99,699,663 		JBrowse link
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta IEA KEGG rno:04960 NCBI chr 5:160,094,952...160,142,962
Ensembl chr 5:160,094,952...160,120,930 		JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 IEA KEGG rno:04960 NCBI chr 2:32,878,942...32,963,668
Ensembl chr 2:32,882,032...32,963,631 		JBrowse link
G Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 IEA KEGG rno:04960 NCBI chr16:18,665,517...18,674,067
Ensembl chr16:18,665,457...18,674,065 		JBrowse link
G Pik3r3 phosphoinositide-3-kinase regulatory subunit 3 IEA KEGG rno:04960 NCBI chr 5:129,700,925...129,772,591
Ensembl chr 5:129,701,229...129,772,583 		JBrowse link
G Pik3r5 phosphoinositide-3-kinase, regulatory subunit 5 IEA KEGG rno:04960 NCBI chr10:53,132,585...53,200,663
Ensembl chr10:53,132,603...53,199,374 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha ISO RGD PMID:21784126 RGD:7421504 NCBI chr14:58,860,752...59,516,525
Ensembl chr14:58,861,144...59,512,656 		JBrowse link
G Prkca protein kinase C, alpha IEA KEGG rno:04960 NCBI chr10:92,889,390...93,288,013
Ensembl chr10:92,894,012...93,288,012 		JBrowse link
G Prkcb protein kinase C, beta IEA KEGG rno:04960 NCBI chr 1:176,832,173...177,163,539
Ensembl chr 1:176,832,226...177,163,536 		JBrowse link
G Prkcg protein kinase C, gamma IEA KEGG rno:04960 NCBI chr 1:65,832,851...65,860,676
Ensembl chr 1:65,832,855...65,859,384 		JBrowse link
G Ptges3 prostaglandin E synthase 3 ISO RGD PMID:21784126 RGD:7421504 NCBI chr 7:490,698...507,759
Ensembl chr 7:490,656...508,084 		JBrowse link
G Scnn1a sodium channel epithelial 1 subunit alpha IEA KEGG rno:04960 NCBI chr 4:158,122,962...158,146,184
Ensembl chr 4:158,122,962...158,146,181 		JBrowse link
G Scnn1b sodium channel epithelial 1 subunit beta IEA KEGG rno:04960 NCBI chr 1:176,430,063...176,484,451
Ensembl chr 1:176,430,103...176,484,451 		JBrowse link
G Scnn1g sodium channel epithelial 1 subunit gamma IEA KEGG rno:04960 NCBI chr 1:176,304,942...176,338,816
Ensembl chr 1:176,304,942...176,338,816 		JBrowse link
G Sfn stratifin IEA KEGG rno:04960 NCBI chr 5:145,826,722...145,827,994
Ensembl chr 5:145,826,201...145,831,314 		JBrowse link
G Sgk1 serum/glucocorticoid regulated kinase 1 IEA KEGG rno:04960 NCBI chr 1:22,980,257...23,098,122
Ensembl chr 1:22,980,261...23,098,283 		JBrowse link
G Ube2i ubiquitin-conjugating enzyme E2I ISO RGD PMID:21784126 RGD:7421504 NCBI chr10:14,277,749...14,294,681
Ensembl chr10:69,701,618...69,702,443
Ensembl chr10:69,701,618...69,702,443 		JBrowse link
altered androgen signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor ISO RGD PMID:18008377 PMID:23759327 RGD:2326139, RGD:8693397 NCBI chr  X:63,104,771...63,273,934
Ensembl chr  X:63,104,771...63,273,925 		JBrowse link
G Ncoa2 nuclear receptor coactivator 2 ISO RGD PMID:23759327 RGD:8693397 NCBI chr 5:5,835,642...6,069,693
Ensembl chr 5:5,835,706...6,067,451 		JBrowse link
G Ncor2 nuclear receptor co-repressor 2 ISO RGD PMID:23759327 RGD:8693397 NCBI chr12:31,466,418...31,628,319
Ensembl chr12:31,466,412...31,628,319 		JBrowse link
altered DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase ISO in silico assessment of loss of DNA-protein interactions and observed enhancement of DNA repair capacity (DRC) in the context of nucleotide excision repair (NER) pathway for SNP RGD PMID:24004570 RGD:9588971 NCBI chr 4:148,893,049...148,904,833
Ensembl chr 4:148,894,280...148,904,982 		JBrowse link
altered hypoxia inducible factor pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vhl von Hippel-Lindau tumor suppressor ISO RGD PMID:22035299 RGD:6907133 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
altered p53 signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets1 ETS proto-oncogene 1, transcription factor ISO RGD PMID:22713868 RGD:8663430 NCBI chr 8:31,045,909...31,168,010
Ensembl chr 8:31,045,945...31,168,010 		JBrowse link
G Mdm2 MDM2 proto-oncogene ISO RGD PMID:19165225 PMID:23262034 RGD:2316186, RGD:8663434 NCBI chr 7:53,290,660...53,315,205
Ensembl chr 7:53,290,664...53,314,915 		JBrowse link
G Mdm4 MDM4 regulator of p53 ISO RGD PMID:23262034 RGD:8663434 NCBI chr13:44,432,596...44,516,165
Ensembl chr13:44,406,213...44,474,226 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease ISO RGD PMID:23263379 RGD:8663431 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279 		JBrowse link
G Nfya nuclear transcription factor Y subunit alpha ISO RGD PMID:23263379 PMID:22713868 RGD:8663431, RGD:8663430 NCBI chr 9:12,587,437...12,613,911
Ensembl chr 9:12,586,259...12,613,898 		JBrowse link
G Nfyb nuclear transcription factor Y subunit beta ISO RGD PMID:23263379 PMID:22713868 RGD:8663431, RGD:8663430 NCBI chr 7:20,964,988...20,980,569
Ensembl chr 7:20,964,993...20,980,565 		JBrowse link
G Nfyc nuclear transcription factor Y subunit gamma ISO RGD PMID:23263379 PMID:22713868 RGD:8663431, RGD:8663430 NCBI chr 5:134,336,802...134,405,372
Ensembl chr 5:134,336,808...134,405,377 		JBrowse link
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 ISO RGD PMID:22713868 RGD:8663430 NCBI chr 8:19,189,408...19,200,785
Ensembl chr 8:19,189,373...19,200,785 		JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 ISO RGD PMID:23263379 PMID:22713868 RGD:8663431, RGD:8663430 NCBI chr 7:113,663,202...113,720,850
Ensembl chr 7:113,663,202...113,720,848 		JBrowse link
G Tp53 tumor protein p53 ISO DNA:mutations:exon RGD PMID:19165225 PMID:23759327 PMID:22713868 PMID:23263379 PMID:18772397 More... RGD:2316186, RGD:8693397, RGD:8663430, RGD:8663431, RGD:5490966, RGD:5133242, RGD:4143515 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Tp63 tumor protein p63 ISO RGD PMID:23263379 PMID:22713868 RGD:8663431, RGD:8663430 NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398 		JBrowse link
G Tp73 tumor protein p73 ISO RGD PMID:23263379 PMID:22713868 RGD:8663431, RGD:8663430 NCBI chr 5:164,621,377...164,703,958
Ensembl chr 5:164,621,377...164,681,128 		JBrowse link
G Vdr vitamin D receptor ISO RGD PMID:22713868 RGD:8663430 NCBI chr 7:128,987,981...129,037,677
Ensembl chr 7:128,987,981...129,037,677 		JBrowse link
altered SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A ISO RGD PMID:23355908 RGD:8694154 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401 		JBrowse link
G Arid1a AT-rich interaction domain 1A ISO RGD PMID:23355908 RGD:8694154 NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
G Arid1b AT-rich interaction domain 1B ISO RGD PMID:23355908 RGD:8694154 NCBI chr 1:45,567,991...45,923,644
Ensembl chr 1:45,563,623...45,923,493 		JBrowse link
G Pbrm1 polybromo 1 ISO RGD PMID:23355908 RGD:8694154 NCBI chr16:6,213,507...6,312,895
Ensembl chr16:6,213,300...6,311,780 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ISO RGD PMID:23355908 RGD:8694154 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
androgen signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor ISO RGD PMID:16356826 RGD:2326084 NCBI chr  X:63,104,771...63,273,934
Ensembl chr  X:63,104,771...63,273,925 		JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 ISO RGD PMID:17163421 RGD:2326123 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689 		JBrowse link
G Crebbp CREB binding protein ISO RGD PMID:17163421 RGD:2326123 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Dnaja2 DnaJ heat shock protein family (Hsp40) member A2 ISO RGD PMID:16356826 RGD:2326084 NCBI chr19:21,497,792...21,516,904
Ensembl chr19:21,497,729...21,516,901 		JBrowse link
G Ep300 E1A binding protein p300 ISO RGD PMID:17163421 RGD:2326123 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 ISO RGD PMID:16356826 RGD:2326084 NCBI chr 6:129,702,376...129,707,907
Ensembl chr 6:129,702,383...129,707,268 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 ISO RGD PMID:16356826 RGD:2326084 NCBI chr 9:15,432,986...15,438,358
Ensembl chr 9:15,433,691...15,438,488 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 ISO RGD PMID:16356826 RGD:2326084 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259 		JBrowse link
G Ncoa1 nuclear receptor coactivator 1 ISO RGD PMID:17163421 RGD:2326123 NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664 		JBrowse link
G Ncoa2 nuclear receptor coactivator 2 ISO RGD PMID:17163421 RGD:2326123 NCBI chr 5:5,835,642...6,069,693
Ensembl chr 5:5,835,706...6,067,451 		JBrowse link
G Ncoa3 nuclear receptor coactivator 3 ISO RGD PMID:17163421 RGD:2326123 NCBI chr 3:154,738,566...154,821,395
Ensembl chr 3:154,738,581...154,818,594 		JBrowse link
G Ncor1 nuclear receptor co-repressor 1 ISO RGD PMID:17163421 RGD:2326123 NCBI chr10:46,999,536...47,142,294
Ensembl chr10:46,999,536...47,141,032 		JBrowse link
G Ncor2 nuclear receptor co-repressor 2 ISO RGD PMID:17163421 RGD:2326123 NCBI chr12:31,466,418...31,628,319
Ensembl chr12:31,466,412...31,628,319 		JBrowse link
G Pias2 protein inhibitor of activated STAT, 2 IMP RGD PMID:9920921 RGD:70792 NCBI chr18:70,608,034...70,714,295
Ensembl chr18:70,607,665...70,710,033 		JBrowse link
G Prmt1 protein arginine methyltransferase 1 ISO RGD PMID:17163421 RGD:2326123 NCBI chr 1:95,458,853...95,468,176
Ensembl chr 1:95,458,850...95,468,345 		JBrowse link
G St13 ST13, Hsp70 interacting protein ISO RGD PMID:16356826 RGD:2326084 NCBI chr 7:112,891,007...112,925,727
Ensembl chr 7:112,844,375...112,925,945 		JBrowse link
G Stip1 stress-induced phosphoprotein 1 ISO RGD PMID:16356826 RGD:2326084 NCBI chr 1:204,209,433...204,228,452
Ensembl chr 1:204,178,932...204,228,476 		JBrowse link
aryl hydrocarbon receptor signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor ISO RGD PMID:10639156 RGD:1300277 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568 		JBrowse link
G Arnt aryl hydrocarbon receptor nuclear translocator ISO RGD PMID:1317062 RGD:41410437 NCBI chr 2:182,997,731...183,056,584
Ensembl chr 2:182,997,736...183,056,580 		JBrowse link
G Arnt2 aryl hydrocarbon receptor nuclear translocator 2 TAS RGD PMID:12859947 RGD:631760 NCBI chr 1:138,236,235...138,392,868
Ensembl chr 1:138,189,940...138,393,153 		JBrowse link
bile acid signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp27a1 cytochrome P450, family 27, subfamily a, polypeptide 1 ISO RGD PMID:28774887 RGD:15045601 NCBI chr 9:76,264,655...76,294,551
Ensembl chr 9:76,264,860...76,294,551 		JBrowse link
G Cyp7a1 cytochrome P450 family 7 subfamily A member 1 ISO RGD PMID:28774887 RGD:15045601 NCBI chr 5:19,376,979...19,386,676
Ensembl chr 5:19,376,974...19,386,688 		JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 ISO RGD PMID:28774887 RGD:15045601 NCBI chr 7:23,846,122...23,942,085
Ensembl chr 7:23,846,122...23,942,047 		JBrowse link
CHD family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd3 chromodomain helicase DNA binding protein 3 ISO RGD PMID:24880148 RGD:9585661 NCBI chr10:54,063,629...54,090,030
Ensembl chr10:54,063,629...54,090,047 		JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 4:157,898,503...157,931,632
Ensembl chr 4:157,899,391...157,931,541 		JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 5:162,848,273...162,898,997
Ensembl chr 5:162,848,394...162,896,291 		JBrowse link
G Gatad2a GATA zinc finger domain containing 2A ISO RGD PMID:24880148 RGD:9585661 NCBI chr16:19,429,578...19,520,320
Ensembl chr16:19,429,578...19,519,587 		JBrowse link
G Gatad2b GATA zinc finger domain containing 2B ISO RGD PMID:24880148 RGD:9585661 NCBI chr 2:175,748,594...175,829,837
Ensembl chr 2:175,749,433...175,825,542 		JBrowse link
G Hdac1 histone deacetylase 1 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111 		JBrowse link
G Hdac2 histone deacetylase 2 ISO RGD PMID:24880148 RGD:9585661 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609 		JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO RGD PMID:24880148 RGD:9585661 NCBI chr18:64,174,002...64,240,795
Ensembl chr18:64,174,002...64,240,794 		JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 7:9,312,961...9,320,166
Ensembl chr 7:9,313,098...9,320,165 		JBrowse link
G Mta1 metastasis associated 1 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 6:132,178,608...132,217,641
Ensembl chr 6:132,178,853...132,217,641 		JBrowse link
G Mta2 metastasis associated 1 family, member 2 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 1:205,838,181...205,846,903
Ensembl chr 1:205,837,964...205,846,946 		JBrowse link
G Mta3 metastasis associated 1 family, member 3 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 6:10,867,028...10,987,221
Ensembl chr 6:10,867,011...10,986,883 		JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO RGD PMID:24880148 RGD:9585661 NCBI chr 5:141,655,863...141,675,157
Ensembl chr 5:141,638,421...141,675,284
Ensembl chr 2:141,638,421...141,675,284 		JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor ISO RGD PMID:24880148 RGD:9585661 NCBI chr  X:31,913,080...31,931,245
Ensembl chr  X:31,913,081...31,931,226 		JBrowse link
cortisol signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crebbp CREB binding protein ISO RGD PMID:11306337 RGD:5147892 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Dnaja2 DnaJ heat shock protein family (Hsp40) member A2 ISO RGD PMID:16610357 RGD:5144125 NCBI chr19:21,497,792...21,516,904
Ensembl chr19:21,497,729...21,516,901 		JBrowse link
G Ep300 E1A binding protein p300 ISO RGD PMID:11306337 RGD:5147892 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Fkbp4 FKBP prolyl isomerase 4 ISO RGD PMID:16610357 RGD:5144125 NCBI chr 4:161,703,379...161,711,833
Ensembl chr 4:161,703,379...161,711,833 		JBrowse link
G Fkbp5 FKBP prolyl isomerase 5 ISO RGD PMID:16610357 RGD:5144125 NCBI chr20:6,457,207...6,575,404
Ensembl chr20:6,457,216...6,541,674 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 ISO RGD PMID:16610357 RGD:5144125 NCBI chr 6:129,702,376...129,707,907
Ensembl chr 6:129,702,383...129,707,268 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 ISO RGD PMID:16610357 RGD:5144125 NCBI chr 9:15,432,986...15,438,358
Ensembl chr 9:15,433,691...15,438,488 		JBrowse link
G Hspa4 heat shock protein family A (Hsp70) member 4 ISO RGD PMID:16610357 RGD:5144125 NCBI chr10:37,408,025...37,449,080
Ensembl chr10:37,408,025...37,449,001 		JBrowse link
G Kat2b lysine acetyltransferase 2B ISO RGD PMID:11306337 RGD:5147892 NCBI chr 9:6,562,525...6,667,064
Ensembl chr 9:6,562,288...6,667,064 		JBrowse link
G Med1 mediator complex subunit 1 TAS
ISO		 RGD PMID:11306337 PMID:11306337 RGD:5147892, RGD:5147892 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Med14 mediator complex subunit 14 ISO RGD PMID:11306337 RGD:5147892 NCBI chr  X:10,036,749...10,127,910
Ensembl chr  X:10,036,805...10,126,240 		JBrowse link
G Ncoa1 nuclear receptor coactivator 1 ISO RGD PMID:19818358 PMID:11306337 RGD:5144138, RGD:5147892 NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664 		JBrowse link
G Ncoa2 nuclear receptor coactivator 2 ISO RGD PMID:19818358 PMID:11306337 RGD:5144138, RGD:5147892 NCBI chr 5:5,835,642...6,069,693
Ensembl chr 5:5,835,706...6,067,451 		JBrowse link
G Ncoa3 nuclear receptor coactivator 3 ISO RGD PMID:19818358 PMID:11306337 RGD:5144138, RGD:5147892 NCBI chr 3:154,738,566...154,821,395
Ensembl chr 3:154,738,581...154,818,594 		JBrowse link
G Ncor1 nuclear receptor co-repressor 1 ISO RGD PMID:20801081 RGD:5147413 NCBI chr10:46,999,536...47,142,294
Ensembl chr10:46,999,536...47,141,032 		JBrowse link
G Ncor2 nuclear receptor co-repressor 2 ISO RGD PMID:20801081 RGD:5147413 NCBI chr12:31,466,418...31,628,319
Ensembl chr12:31,466,412...31,628,319 		JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 ISO RGD PMID:16610357 RGD:5144125 NCBI chr18:31,271,681...31,393,320
Ensembl chr18:31,271,681...31,393,375 		JBrowse link
G Ptges3 prostaglandin E synthase 3 ISO RGD PMID:16610357 RGD:5144125 NCBI chr 7:490,698...507,759
Ensembl chr 7:490,656...508,084 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ISO RGD PMID:11306337 RGD:5147892 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Stip1 stress-induced phosphoprotein 1 ISO RGD PMID:16610357 RGD:5144125 NCBI chr 1:204,209,433...204,228,452
Ensembl chr 1:204,178,932...204,228,476 		JBrowse link
DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxxc1 CXXC finger protein 1 ISO RGD PMID:23697932 RGD:9479164 NCBI chr18:67,813,185...67,818,556
Ensembl chr18:67,813,206...67,818,551 		JBrowse link
G Dnmt1 DNA methyltransferase 1 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha ISO RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 3:142,130,588...142,169,128
Ensembl chr 3:142,130,592...142,169,124 		JBrowse link
G Ebf1 EBF transcription factor 1 ISO RGD PMID:24825349 RGD:8695944 NCBI chr10:29,095,858...29,489,142
Ensembl chr10:29,099,933...29,487,665 		JBrowse link
G Kdm2a lysine demethylase 2A ISO RGD PMID:23697932 RGD:9479164 NCBI chr 1:201,612,427...201,682,359
Ensembl chr 1:201,612,453...201,680,787 		JBrowse link
G Kdm2b lysine demethylase 2B ISO RGD PMID:23697932 RGD:9479164 NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355 		JBrowse link
G Kmt2a lysine methyltransferase 2A ISO RGD PMID:23697932 RGD:9479164 NCBI chr 8:45,116,763...45,193,320
Ensembl chr 8:45,118,814...45,193,181 		JBrowse link
G Kmt2c lysine methyltransferase 2C ISO RGD PMID:23697932 RGD:9479164 NCBI chr 4:9,620,638...9,834,787
Ensembl chr 4:9,609,627...9,833,539 		JBrowse link
G Mbd1 methyl-CpG binding domain protein 1 ISO RGD PMID:23324617 RGD:8695954 NCBI chr18:67,869,870...67,884,501
Ensembl chr18:67,869,992...67,886,554 		JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chr18:64,174,002...64,240,795
Ensembl chr18:64,174,002...64,240,794 		JBrowse link
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase ISO RGD PMID:23324617 RGD:8695954 NCBI chr 4:148,893,049...148,904,833
Ensembl chr 4:148,894,280...148,904,982 		JBrowse link
G Mecp2 methyl CpG binding protein 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Nanog Nanog homeobox ISO RGD PMID:24825349 RGD:8695944 NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase ISO RGD PMID:24825349 RGD:8695944 NCBI chr  X:66,771,278...66,816,148
Ensembl chr  X:66,771,349...66,816,146 		JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma ISO RGD PMID:24825349 RGD:8695944 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468 		JBrowse link
G Prdm14 PR/SET domain 14 ISO RGD PMID:24825349 RGD:8695944 NCBI chr 5:6,082,163...6,092,712
Ensembl chr 5:6,082,442...6,092,712 		JBrowse link
G Sin3a SIN3 transcription regulator family member A ISO RGD PMID:24825349 RGD:8695944 NCBI chr 8:57,481,539...57,536,195
Ensembl chr 8:57,481,573...57,536,192 		JBrowse link
G Spi1 Spi-1 proto-oncogene ISO RGD PMID:24825349 RGD:8695944 NCBI chr 3:77,059,744...77,093,730
Ensembl chr 3:77,073,012...77,092,393 		JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052 		JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534 		JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 ISO RGD PMID:22770212 PMID:23697932 PMID:24825349 RGD:8695943, RGD:9479164, RGD:8695944 NCBI chr 4:115,867,412...115,964,433
Ensembl chr 4:115,871,265...115,964,193 		JBrowse link
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 9:1,133,117...1,154,639
Ensembl chr 9:1,134,909...1,154,631 		JBrowse link
G Uhrf2 ubiquitin like with PHD and ring finger domains 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 1:227,814,639...227,877,907
Ensembl chr 1:227,814,963...227,877,904 		JBrowse link
G Zbtb33 zinc finger and BTB domain containing 33 ISO RGD PMID:23324617 RGD:8695954 NCBI chr  X:116,963,337...116,970,547
Ensembl chr  X:116,963,347...116,971,023 		JBrowse link
G Zbtb38 zinc finger and BTB domain containing 38 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 8:97,284,617...97,288,518
Ensembl chr 8:97,280,993...97,485,625 		JBrowse link
G Zbtb4 zinc finger and BTB domain containing 4 ISO RGD PMID:23324617 RGD:8695954 NCBI chr10:54,480,698...54,501,492
Ensembl chr10:54,485,071...54,501,492 		JBrowse link
G Zfp57 zinc finger protein 57 ISO RGD PMID:23324617 RGD:8695954 NCBI chr20:1,521,323...1,534,884
Ensembl chr20:1,521,323...1,529,846 		JBrowse link
estrogen signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascc1 activating signal cointegrator 1 complex subunit 1 ISO RGD PMID:16394250 RGD:5128512 NCBI chr20:27,941,053...28,031,272
Ensembl chr20:27,941,283...28,031,272 		JBrowse link
G Calcoco1 calcium binding and coiled coil domain 1 ISO RGD PMID:16394250 RGD:5128512 NCBI chr 7:133,834,705...133,849,515
Ensembl chr 7:133,834,707...133,849,422 		JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 ISO RGD PMID:16394250 RGD:5128512 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689 		JBrowse link
G Crebbp CREB binding protein ISO RGD PMID:16394250 RGD:5128512 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Ddx5 DEAD-box helicase 5 ISO RGD PMID:16394250 RGD:5128512 NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283 		JBrowse link
G Dnaja2 DnaJ heat shock protein family (Hsp40) member A2 ISO RGD PMID:18451092 RGD:4892102 NCBI chr19:21,497,792...21,516,904
Ensembl chr19:21,497,729...21,516,901 		JBrowse link
G Ep300 E1A binding protein p300 ISO RGD PMID:16394250 RGD:5128512 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Esr1 estrogen receptor 1 ISO
IDA		 RGD PMID:16651458 PMID:17928626 PMID:19274700 RGD:1580338, RGD:5128669, RGD:4892064 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002 		JBrowse link
G Esr2 estrogen receptor 2 IDA
ISO		 RGD PMID:15564578 PMID:17928626 PMID:19274700 RGD:1582269, RGD:5128669, RGD:4892064 NCBI chr 6:94,858,438...94,909,630
Ensembl chr 6:94,809,547...94,908,919 		JBrowse link
G Fkbp4 FKBP prolyl isomerase 4 ISO RGD PMID:18451092 RGD:4892102 NCBI chr 4:161,703,379...161,711,833
Ensembl chr 4:161,703,379...161,711,833 		JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 ISO
IMP
IDA		 RGD PMID:19274700 PMID:20445128 PMID:19767412 PMID:20445128 RGD:4892064, RGD:4892084, RGD:5128698, RGD:4892084 NCBI chr12:15,217,217...15,222,679
Ensembl chr12:15,217,442...15,221,889 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 ISO RGD PMID:18451092 RGD:4892102 NCBI chr 6:129,702,376...129,707,907
Ensembl chr 6:129,702,383...129,707,268 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 ISO RGD PMID:18451092 RGD:4892102 NCBI chr 9:15,432,986...15,438,358
Ensembl chr 9:15,433,691...15,438,488 		JBrowse link
G Hspa4 heat shock protein family A (Hsp70) member 4 ISO RGD PMID:18451092 RGD:4892102 NCBI chr10:37,408,025...37,449,080
Ensembl chr10:37,408,025...37,449,001 		JBrowse link
G Med1 mediator complex subunit 1 ISO RGD PMID:16394250 RGD:5128512 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Ncoa1 nuclear receptor coactivator 1 ISO RGD PMID:16394250 RGD:5128512 NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664 		JBrowse link
G Ncoa2 nuclear receptor coactivator 2 ISO RGD PMID:16394250 RGD:5128512 NCBI chr 5:5,835,642...6,069,693
Ensembl chr 5:5,835,706...6,067,451 		JBrowse link
G Ncoa3 nuclear receptor coactivator 3 ISO RGD PMID:16394250 RGD:5128512 NCBI chr 3:154,738,566...154,821,395
Ensembl chr 3:154,738,581...154,818,594 		JBrowse link
G Ncoa6 nuclear receptor coactivator 6 ISO RGD PMID:16394250 RGD:5128512 NCBI chr 3:143,890,896...143,961,916
Ensembl chr 3:143,890,896...143,952,268 		JBrowse link
G Ncor1 nuclear receptor co-repressor 1 ISO RGD PMID:16394250 RGD:5128512 NCBI chr10:46,999,536...47,142,294
Ensembl chr10:46,999,536...47,141,032 		JBrowse link
G Ncor2 nuclear receptor co-repressor 2 ISO RGD PMID:16394250 RGD:5128512 NCBI chr12:31,466,418...31,628,319
Ensembl chr12:31,466,412...31,628,319 		JBrowse link
G Nrip1 nuclear receptor interacting protein 1 ISO RGD PMID:16394250 RGD:5128512 NCBI chr11:14,895,843...14,979,490
Ensembl chr11:14,895,553...14,981,761 		JBrowse link
G Phb2 prohibitin 2 ISO RGD PMID:16394250 RGD:5128512 NCBI chr 4:157,517,662...157,522,268
Ensembl chr 4:157,517,577...157,522,272 		JBrowse link
G Ppid peptidylprolyl isomerase D ISO RGD PMID:18451092 RGD:4892102 NCBI chr 2:164,727,803...164,740,168
Ensembl chr 2:164,727,779...164,740,221 		JBrowse link
G Prmt1 protein arginine methyltransferase 1 ISO RGD PMID:16394250 RGD:5128512 NCBI chr 1:95,458,853...95,468,176
Ensembl chr 1:95,458,850...95,468,345 		JBrowse link
G Ptges3 prostaglandin E synthase 3 ISO RGD PMID:18451092 RGD:4892102 NCBI chr 7:490,698...507,759
Ensembl chr 7:490,656...508,084 		JBrowse link
G Siah2 siah E3 ubiquitin protein ligase 2 ISO RGD PMID:16394250 RGD:5128512 NCBI chr 2:142,913,924...142,931,752
Ensembl chr 2:142,914,003...142,931,950 		JBrowse link
G Sra1 steroid receptor RNA activator 1 ISO RGD PMID:16394250 RGD:5128512 NCBI chr18:28,269,192...28,273,023
Ensembl chr18:28,269,311...28,272,538 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase IMP RGD PMID:17928626 PMID:20445128 RGD:5128669, RGD:4892084 NCBI chr 3:146,091,969...146,139,492
Ensembl chr 3:146,091,841...146,139,476 		JBrowse link
G Stip1 stress-induced phosphoprotein 1 ISO RGD PMID:18451092 RGD:4892102 NCBI chr 1:204,209,433...204,228,452
Ensembl chr 1:204,178,932...204,228,476 		JBrowse link
forkhead class A signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc8 ATP binding cassette subfamily C member 8 ISO PID PID:200087 NCBI chr 1:96,598,568...96,679,563
Ensembl chr 1:96,598,647...96,679,510 		JBrowse link
G Acadm acyl-CoA dehydrogenase medium chain ISO PID PID:200087 NCBI chr 2:242,858,865...242,883,036
Ensembl chr 2:242,858,865...242,883,147 		JBrowse link
G Acadvl acyl-CoA dehydrogenase, very long chain ISO PID PID:200087 NCBI chr10:54,732,875...54,738,102
Ensembl chr10:54,732,469...54,738,075 		JBrowse link
G Afp alpha-fetoprotein ISO PID PID:200087 NCBI chr14:17,573,412...17,591,476
Ensembl chr14:17,573,412...17,591,480 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO PID PID:200087 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921 		JBrowse link
G Alas1 5'-aminolevulinate synthase 1 ISO PID PID:200087 NCBI chr 8:106,876,514...106,889,917
Ensembl chr 8:106,876,514...106,889,917 		JBrowse link
G Alb albumin ISO PID PID:200087 NCBI chr14:17,607,397...17,622,814
Ensembl chr14:17,607,381...17,622,836 		JBrowse link
G Aldob aldolase, fructose-bisphosphate B ISO PID PID:200087 NCBI chr 5:63,889,045...63,902,086
Ensembl chr 5:63,889,046...63,902,116 		JBrowse link
G Ap1b1 adaptor related protein complex 1 subunit beta 1 ISO PID PID:200226 NCBI chr14:79,879,482...79,930,778
Ensembl chr14:79,879,533...79,930,778 		JBrowse link
G Apoa1 apolipoprotein A1 ISO PID PID:200087 NCBI chr 8:46,527,251...46,529,035
Ensembl chr 8:46,527,144...46,529,035 		JBrowse link
G Apob apolipoprotein B ISO PID PID:200226 NCBI chr 6:30,844,386...30,883,983
Ensembl chr 6:30,844,368...30,892,497 		JBrowse link
G Ar androgen receptor ISO PID PID:200226 NCBI chr  X:63,104,771...63,273,934
Ensembl chr  X:63,104,771...63,273,925 		JBrowse link
G Atp5pf ATP synthase peripheral stalk subunit F6 ISO PID PID:200226 NCBI chr11:23,881,594...23,889,581
Ensembl chr11:23,881,592...23,889,119 		JBrowse link
G Bdh1 3-hydroxybutyrate dehydrogenase 1 ISO PID PID:200087 NCBI chr11:69,302,534...69,343,173
Ensembl chr11:69,302,534...69,337,671 		JBrowse link
G Brca1 BRCA1, DNA repair associated ISO PID PID:200226 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G C4bpb complement component 4 binding protein, beta ISO PID PID:200226 NCBI chr13:42,120,798...42,131,515
Ensembl chr13:42,120,798...42,131,817 		JBrowse link
G Cdkn1b cyclin-dependent kinase inhibitor 1B ISO PID PID:200226 NCBI chr 4:167,760,067...167,765,177
Ensembl chr 4:167,760,181...167,764,982 		JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha ISO PID PID:200087 NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412 		JBrowse link
G Cebpb CCAAT/enhancer binding protein beta ISO PID PID:200087 PID:200226 NCBI chr 3:156,398,035...156,399,466
Ensembl chr 3:156,397,052...156,399,473 		JBrowse link
G Cebpd CCAAT/enhancer binding protein delta ISO PID PID:200087 NCBI chr11:84,764,670...84,765,808
Ensembl chr11:84,764,565...84,765,829 		JBrowse link
G Col18a1 collagen type XVIII alpha 1 chain ISO PID PID:200226 NCBI chr20:11,474,104...11,582,593
Ensembl chr20:11,474,104...11,582,593 		JBrowse link
G Cpt1a carnitine palmitoyltransferase 1A ISO PID PID:200087 NCBI chr 1:200,564,634...200,627,059
Ensembl chr 1:200,565,613...200,627,055 		JBrowse link
G Cpt1b carnitine palmitoyltransferase 1B ISO PID PID:200087 NCBI chr 7:120,491,354...120,500,833
Ensembl chr 7:120,491,354...120,500,404 		JBrowse link
G Cpt1c carnitine palmitoyltransferase 1c ISO PID PID:200087 NCBI chr 1:95,442,814...95,457,347
Ensembl chr 1:95,442,817...95,457,342 		JBrowse link
G Creb1 cAMP responsive element binding protein 1 ISO PID PID:200087 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816 		JBrowse link
G Crebbp CREB binding protein ISO PID PID:200226 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Cyp2c11 cytochrome P450, subfamily 2, polypeptide 11 ISO PID PID:200226 NCBI chr 1:236,762,719...236,799,069
Ensembl chr 1:236,762,842...236,799,066 		JBrowse link
G Dlk1 delta like non-canonical Notch ligand 1 ISO PID PID:200087 NCBI chr 6:128,410,216...128,417,518
Ensembl chr 6:128,410,316...128,417,522 		JBrowse link
G Dscam DS cell adhesion molecule ISO PID PID:200226 NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Ep300 E1A binding protein p300 ISO PID PID:200226 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Esr1 estrogen receptor 1 ISO PID PID:200226 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002 		JBrowse link
G F2 coagulation factor II, thrombin ISO PID PID:200087 NCBI chr 3:77,596,196...77,609,486
Ensembl chr 3:77,596,198...77,609,486 		JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO PID PID:200226 NCBI chr 6:105,121,170...105,124,036
Ensembl chr 6:105,121,170...105,124,036 		JBrowse link
G Foxa1 forkhead box A1 ISO PID PID:200087 PID:200226 NCBI chr 6:75,099,907...75,136,534
Ensembl chr 6:75,103,503...75,136,188 		JBrowse link
G Foxa2 forkhead box A2 ISO PID PID:200087 PID:200226 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Foxa3 forkhead box A3 ISO PID PID:200087 PID:200226 NCBI chr 1:78,662,067...78,672,321
Ensembl chr 1:78,662,431...78,672,155 		JBrowse link
G Foxf1 forkhead box F1 ISO PID PID:200087 NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G G6pc1 glucose-6-phosphatase catalytic subunit 1 ISO PID PID:200087 NCBI chr10:86,307,400...86,318,766
Ensembl chr10:86,257,668...86,333,804 		JBrowse link
G Gcg glucagon ISO PID PID:200226 NCBI chr 3:47,113,914...47,122,958
Ensembl chr 3:47,113,914...47,122,929 		JBrowse link
G Gck glucokinase ISO PID PID:200087 NCBI chr14:80,785,060...80,829,842
Ensembl chr14:80,785,060...80,826,995 		JBrowse link
G Hadh hydroxyacyl-CoA dehydrogenase ISO PID PID:200087 NCBI chr 2:219,787,935...219,830,335
Ensembl chr 2:219,787,927...219,830,353 		JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 ISO PID PID:200087 NCBI chr 2:51,649,368...51,667,100
Ensembl chr 2:51,649,497...51,667,100 		JBrowse link
G Hnf1a HNF1 homeobox A ISO PID PID:200087 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104 		JBrowse link
G Hnf1b HNF1 homeobox B ISO PID PID:200087 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha ISO PID PID:200087 NCBI chr 3:152,186,787...152,248,320
Ensembl chr 3:152,186,787...152,248,320 		JBrowse link
G Igfbp1 insulin-like growth factor binding protein 1 ISO PID PID:200087 NCBI chr14:82,047,415...82,052,482
Ensembl chr14:82,047,415...82,052,482 		JBrowse link
G Ins2 insulin 2 ISO PID PID:200087 PID:200226 NCBI chr 1:197,843,277...197,992,522
Ensembl chr 1:197,843,281...197,864,775 		JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO PID PID:200226 NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656 		JBrowse link
G Kcnj11 potassium inwardly-rectifying channel, subfamily J, member 11 ISO PID PID:200087 NCBI chr 1:96,591,048...96,594,574
Ensembl chr 1:96,591,049...96,594,082 		JBrowse link
G Klk1c10 kallikrein 1-related peptidase C10 ISO PID PID:200226 NCBI chr 1:94,402,993...94,407,052
Ensembl chr 1:94,402,993...94,407,052 		JBrowse link
G Ncoa3 nuclear receptor coactivator 3 ISO PID PID:200226 NCBI chr 3:154,738,566...154,821,395
Ensembl chr 3:154,738,581...154,818,594 		JBrowse link
G Ndufv3 NADH:ubiquinone oxidoreductase subunit V3 ISO PID PID:200226 NCBI chr20:9,612,462...9,621,622
Ensembl chr20:9,612,431...9,623,074
Ensembl chr13:9,612,431...9,623,074 		JBrowse link
G Nf1 neurofibromin 1 ISO PID PID:200087 NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658 		JBrowse link
G Nfia nuclear factor I/A ISO PID PID:200226 NCBI chr 5:112,436,655...112,781,878
Ensembl chr 5:112,436,644...112,775,885 		JBrowse link
G Nfib nuclear factor I/B ISO PID PID:200226 NCBI chr 5:96,759,208...96,974,001
Ensembl chr 5:96,764,653...96,975,479 		JBrowse link
G Nfic nuclear factor I/C ISO PID PID:200226 NCBI chr 7:8,278,210...8,309,936
Ensembl chr 7:8,253,361...8,309,936 		JBrowse link
G Nkx2-1 NK2 homeobox 1 ISO PID PID:200087 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
G Nkx3-1 NK3 homeobox 1 ISO PID PID:200226 NCBI chr15:44,473,851...44,476,443
Ensembl chr15:44,473,851...44,476,441 		JBrowse link
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 ISO PID PID:200226 NCBI chr 1:124,008,282...124,022,521
Ensembl chr 1:124,009,181...124,022,031 		JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 ISO PID PID:200087 NCBI chr18:31,271,681...31,393,320
Ensembl chr18:31,271,681...31,393,375 		JBrowse link
G Nrip1 nuclear receptor interacting protein 1 ISO PID PID:200226 NCBI chr11:14,895,843...14,979,490
Ensembl chr11:14,895,553...14,981,761 		JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1 ISO PID PID:200087 NCBI chr 3:161,930,256...161,936,205
Ensembl chr 3:161,930,256...161,936,191 		JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 ISO PID PID:200087 NCBI chr12:7,757,865...7,763,064
Ensembl chr12:7,757,865...7,763,064 		JBrowse link
G Pisd phosphatidylserine decarboxylase ISO PID PID:200226 NCBI chr14:77,941,927...77,991,021
Ensembl chr14:77,941,948...77,991,003 		JBrowse link
G Pklr pyruvate kinase L/R ISO PID PID:200087 NCBI chr 2:174,543,008...174,551,863
Ensembl chr 2:174,543,039...174,551,870 		JBrowse link
G Pou2f1 POU class 2 homeobox 1 ISO PID PID:200226 NCBI chr13:78,120,617...78,263,306
Ensembl chr13:78,130,685...78,263,363 		JBrowse link
G Prdm15 PR/SET domain 15 ISO PID PID:200226 NCBI chr11:37,164,608...37,225,172
Ensembl chr11:37,165,575...37,222,207 		JBrowse link
G Scgb1a1 secretoglobin family 1A member 1 ISO PID PID:200226 NCBI chr 1:205,977,060...205,980,610
Ensembl chr 1:205,977,060...205,980,610 		JBrowse link
G Serpina1 serpin family A member 1 ISO PID PID:200226 NCBI chr 6:122,866,314...122,888,339
Ensembl chr 6:122,866,312...122,888,339 		JBrowse link
G Sftpa1 surfactant protein A1 ISO PID PID:200226 NCBI chr16:17,008,180...17,011,686
Ensembl chr16:17,008,180...17,011,685 		JBrowse link
G Sftpd surfactant protein D ISO PID PID:200226 NCBI chr16:17,046,491...17,058,968
Ensembl chr16:17,046,483...17,059,927 		JBrowse link
G Shh sonic hedgehog signaling molecule ISO PID PID:200226 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Slc2a2 solute carrier family 2 member 2 ISO PID PID:200087 NCBI chr 2:111,609,798...111,639,930
Ensembl chr 2:111,611,774...111,639,933 		JBrowse link
G Sod1 superoxide dismutase 1 ISO PID PID:200226 NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249 		JBrowse link
G Sp1 Sp1 transcription factor ISO PID PID:200087 PID:200226 NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961 		JBrowse link
G Tat tyrosine aminotransferase ISO PID PID:200087 NCBI chr19:37,947,153...37,957,717
Ensembl chr19:37,947,112...37,958,031 		JBrowse link
G Tff1 trefoil factor 1 ISO PID PID:200226 NCBI chr20:9,235,736...9,239,597
Ensembl chr20:9,235,736...9,239,597 		JBrowse link
G Tfrc transferrin receptor ISO PID PID:200087 NCBI chr11:68,163,413...68,185,257
Ensembl chr11:68,163,413...68,185,257 		JBrowse link
G Ttr transthyretin ISO PID PID:200087 NCBI chr18:11,941,791...11,951,008
Ensembl chr18:11,943,789...11,951,008 		JBrowse link
G Ucp2 uncoupling protein 2 ISO PID PID:200087 NCBI chr 1:154,839,242...154,845,612
Ensembl chr 1:154,839,209...154,845,611 		JBrowse link
G Vtn vitronectin ISO PID PID:200226 NCBI chr10:63,394,732...63,397,812
Ensembl chr10:63,394,719...63,397,810 		JBrowse link
G Xbp1 X-box binding protein 1 ISO PID PID:200226 NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693 		JBrowse link
histone modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aebp2 AE binding protein 2 ISO RGD PMID:24148750 RGD:9479059 NCBI chr 4:173,527,881...173,566,033
Ensembl chr 4:173,528,344...173,593,100 		JBrowse link
G Aplf aprataxin and PNKP like factor ISO RGD PMID:23288364 RGD:9068945 NCBI chr 4:120,070,471...120,122,656
Ensembl chr 4:120,070,471...120,122,633 		JBrowse link
G Asf1a anti-silencing function 1A histone chaperone ISO RGD PMID:23288364 RGD:9068945 NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808 		JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO RGD PMID:23288364 RGD:9068945 NCBI chr19:24,181,024...24,195,604
Ensembl chr19:24,181,028...24,195,549 		JBrowse link
G Ash1l ASH1 like histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:174,346,267...174,483,057
Ensembl chr 2:174,346,150...174,483,055 		JBrowse link
G Ash2l ASH2 like histone lysine methyltransferase complex subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chr16:66,242,205...66,264,064
Ensembl chr16:66,242,212...66,264,061 		JBrowse link
G Bap1 BRCA1 associated deubiquitinase 1 ISO RGD PMID:24647359 RGD:9479061 NCBI chr16:6,446,709...6,455,535
Ensembl chr16:6,446,709...6,455,535 		JBrowse link
G Birc5 baculoviral IAP repeat-containing 5 ISO RGD PMID:23642229 RGD:9479074 NCBI chr10:103,072,530...103,081,382
Ensembl chr10:103,073,408...103,081,380 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690 		JBrowse link
G Bptf bromodomain PHD finger transcription factor ISO RGD PMID:24686119 PMID:23642229 RGD:9479075, RGD:9479074 NCBI chr10:91,980,279...92,082,731
Ensembl chr10:91,982,758...92,082,769 		JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 9:1,986,942...1,989,484
Ensembl chr 9:1,986,575...1,991,080 		JBrowse link
G Brd1 bromodomain containing 1 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 7:119,774,187...119,822,032
Ensembl chr 7:119,774,188...119,822,031 		JBrowse link
G Brd2 bromodomain containing 2 ISO RGD PMID:24686119 RGD:9479075 NCBI chr20:4,727,078...4,735,389
Ensembl chr20:4,728,151...4,735,388 		JBrowse link
G Brd3 bromodomain containing 3 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 3:10,773,163...10,829,675
Ensembl chr 3:10,775,272...10,829,577 		JBrowse link
G Brd4 bromodomain containing 4 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539 		JBrowse link
G Brd7 bromodomain containing 7 ISO RGD PMID:24686119 RGD:9479075 NCBI chr19:18,708,792...18,737,497
Ensembl chr19:18,709,022...18,737,494 		JBrowse link
G Brdt bromodomain testis associated ISO RGD PMID:24686119 RGD:9479075 NCBI chr14:2,387,372...2,445,857
Ensembl chr14:2,387,796...2,445,842 		JBrowse link
G Brf1 BRF1 general transcription factor IIIB subunit ISO RGD PMID:23642229 RGD:9479074 NCBI chr 6:132,034,378...132,081,313
Ensembl chr 6:132,037,272...132,081,278 		JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 ISO RGD PMID:24583552 RGD:9479047 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689 		JBrowse link
G Cbx2 chromobox 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr10:104,278,517...104,287,384
Ensembl chr10:104,278,549...104,287,383 		JBrowse link
G Cbx4 chromobox 4 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr10:104,337,140...104,343,210
Ensembl chr10:104,336,876...104,356,706 		JBrowse link
G Cbx5 chromobox 5 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 7:134,333,165...134,376,102
Ensembl chr 7:134,331,335...134,375,022 		JBrowse link
G Cbx6 chromobox 6 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 7:111,372,979...111,383,026
Ensembl chr 7:111,372,980...111,383,091 		JBrowse link
G Cbx7 chromobox 7 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 7:111,460,656...111,479,231
Ensembl chr 7:111,460,656...111,477,973 		JBrowse link
G Cbx8 chromobox 8 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr10:104,294,518...104,296,956
Ensembl chr10:104,294,518...104,297,024 		JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A ISO RGD PMID:23288364 RGD:9068945 NCBI chr 9:873,953...900,701
Ensembl chr 9:874,051...900,654 		JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B ISO RGD PMID:23288364 RGD:9068945 NCBI chr11:33,200,894...33,221,076
Ensembl chr11:33,200,981...33,221,070 		JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 1:56,661,743...56,729,119
Ensembl chr 1:56,664,054...56,728,125 		JBrowse link
G Crebbp CREB binding protein ISO RGD PMID:21151613 PMID:24686119 RGD:9104959, RGD:9479075 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Cxxc1 CXXC finger protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr18:67,813,185...67,818,556
Ensembl chr18:67,813,206...67,818,551 		JBrowse link
G Daxx death-domain associated protein ISO RGD PMID:23288364 RGD:9068945 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843 		JBrowse link
G Dot1l DOT1 like histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 7:8,918,764...8,959,474
Ensembl chr 7:8,917,786...8,956,475 		JBrowse link
G Dpf3 double PHD fingers 3 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 6:102,841,403...103,125,558
Ensembl chr 6:102,846,029...103,125,493 		JBrowse link
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chr 6:21,120,947...21,141,720
Ensembl chr 6:21,120,947...21,141,432 		JBrowse link
G Eed embryonic ectoderm development ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr 1:143,867,875...143,895,008
Ensembl chr 1:143,867,875...143,894,974 		JBrowse link
G Ehmt1 euchromatic histone lysine methyltransferase 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 3:7,580,680...7,729,046
Ensembl chr 3:7,580,683...7,729,007 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 ISO RGD PMID:23200123 PMID:23642229 RGD:7242632, RGD:9479074 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G Ep300 E1A binding protein p300 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr10:86,126,023...86,162,001
Ensembl chr10:86,126,015...86,161,921 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO RGD PMID:23200123 PMID:24148750 PMID:23473600 RGD:7242632, RGD:9479059, RGD:9479058 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G H2ax H2A.X variant histone ISO RGD PMID:24614311 RGD:9075965 NCBI chr 8:44,671,907...44,673,262
Ensembl chr 8:44,671,786...44,673,239
Ensembl chr 4:44,671,786...44,673,239 		JBrowse link
G H2az1 H2A.Z variant histone 1 ISO RGD PMID:24696452 RGD:9074213 NCBI chr 2:226,355,668...226,357,984
Ensembl chr 2:226,355,708...226,358,485 		JBrowse link
G H3f3a H3.3 histone A ISO RGD PMID:24614311 RGD:9075965 NCBI chr13:92,533,289...92,544,902
Ensembl chr13:92,533,298...92,544,908 		JBrowse link
G H3f3b H3.3 histone B ISO RGD PMID:24614311 RGD:9075965 NCBI chr10:101,256,484...101,258,716
Ensembl chr10:101,256,480...101,258,709
Ensembl chr13:101,256,480...101,258,709 		JBrowse link
G Hat1 histone acetyltransferase 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 3:56,217,344...56,265,021
Ensembl chr 3:56,217,342...56,275,517 		JBrowse link
G Hcfc1 host cell factor C1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr  X:151,687,779...151,712,688
Ensembl chr  X:151,687,779...151,712,638 		JBrowse link
G Hdac1 histone deacetylase 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111 		JBrowse link
G Hdac10 histone deacetylase 10 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 7:120,199,126...120,205,850
Ensembl chr 7:120,199,129...120,204,228 		JBrowse link
G Hdac11 histone deacetylase 11 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 4:123,645,873...123,667,407
Ensembl chr 4:123,650,157...123,667,405 		JBrowse link
G Hdac2 histone deacetylase 2 ISO RGD PMID:21151613 RGD:9104959 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609 		JBrowse link
G Hdac3 histone deacetylase 3 ISO RGD PMID:21151613 RGD:9104959 NCBI chr18:29,770,637...29,789,850
Ensembl chr18:29,770,636...29,793,856 		JBrowse link
G Hdac4 histone deacetylase 4 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164 		JBrowse link
G Hdac5 histone deacetylase 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chr10:87,152,978...87,187,921
Ensembl chr10:87,152,978...87,188,235 		JBrowse link
G Hdac6 histone deacetylase 6 ISO RGD PMID:21151613 RGD:9104959 NCBI chr  X:14,550,645...14,572,445
Ensembl chr  X:14,551,044...14,572,441 		JBrowse link
G Hdac7 histone deacetylase 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 7:128,923,918...128,961,926
Ensembl chr 7:128,923,920...128,962,072 		JBrowse link
G Hdac8 histone deacetylase 8 ISO RGD PMID:21151613 RGD:9104959 NCBI chr  X:67,385,288...67,593,014
Ensembl chr  X:67,385,289...67,592,923 		JBrowse link
G Hdac9 histone deacetylase 9 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 6:50,762,074...51,624,311
Ensembl chr 6:50,763,590...51,625,333 		JBrowse link
G Hira histone cell cycle regulator ISO RGD PMID:23288364 RGD:9068945 NCBI chr11:82,024,469...82,133,212
Ensembl chr11:82,024,469...82,133,529 		JBrowse link
G Hjurp Holliday junction recognition protein ISO RGD PMID:23288364 RGD:9068945 NCBI chr 9:88,853,379...88,867,730
Ensembl chr 9:88,853,386...88,867,728 		JBrowse link
G Ing2 inhibitor of growth family, member 2 ISO RGD PMID:23642229 RGD:9479074 NCBI chr16:44,573,592...44,584,180
Ensembl chr16:44,575,597...44,583,482 		JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr17:19,777,487...19,957,696
Ensembl chr17:19,777,266...19,955,690 		JBrowse link
G Jmjd1c jumonji domain containing 1C ISO RGD PMID:23200123 RGD:7242632 NCBI chr20:21,332,147...21,494,220
Ensembl chr20:21,332,147...21,463,122 		JBrowse link
G Kat2a lysine acetyltransferase 2A ISO RGD PMID:21151613 PMID:23642229 RGD:9104959, RGD:9479074 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Kat2b lysine acetyltransferase 2B ISO RGD PMID:21151613 RGD:9104959 NCBI chr 9:6,562,525...6,667,064
Ensembl chr 9:6,562,288...6,667,064 		JBrowse link
G Kat5 lysine acetyltransferase 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458 		JBrowse link
G Kat6a lysine acetyltransferase 6A ISO RGD PMID:21151613 RGD:9104959 NCBI chr16:69,084,914...69,165,923
Ensembl chr16:69,084,914...69,163,606 		JBrowse link
G Kat6b lysine acetyltransferase 6B ISO RGD PMID:21151613 RGD:9104959 NCBI chr15:2,638,885...2,811,977
Ensembl chr15:2,639,200...2,812,316 		JBrowse link
G Kat7 lysine acetyltransferase 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567 		JBrowse link
G Kat8 lysine acetyltransferase 8 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 1:182,524,355...182,536,638
Ensembl chr 1:182,515,327...182,536,633 		JBrowse link
G Kdm1a lysine demethylase 1A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319 		JBrowse link
G Kdm1b lysine demethylase 1B ISO RGD PMID:23200123 RGD:7242632 NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800 		JBrowse link
G Kdm2a lysine demethylase 2A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:201,612,427...201,682,359
Ensembl chr 1:201,612,453...201,680,787 		JBrowse link
G Kdm2b lysine demethylase 2B ISO RGD PMID:23200123 RGD:7242632 NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355 		JBrowse link
G Kdm3a lysine demethylase 3A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:103,630,907...103,675,073
Ensembl chr 4:103,630,908...103,675,073 		JBrowse link
G Kdm3b lysine demethylase 3B ISO RGD PMID:23200123 RGD:7242632 NCBI chr18:26,380,859...26,436,701
Ensembl chr18:26,380,964...26,436,628 		JBrowse link
G Kdm4a lysine demethylase 4A ISO RGD PMID:23200123 PMID:23642229 PMID:24035451 RGD:7242632, RGD:9479074, RGD:9479148 NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501 		JBrowse link
G Kdm4b lysine demethylase 4B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 9:1,158,737...1,237,233
Ensembl chr 9:1,158,752...1,236,543 		JBrowse link
G Kdm4c lysine demethylase 4C ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818 		JBrowse link
G Kdm4d lysine demethylase 4D ISO RGD PMID:23200123 RGD:7242632 NCBI chr 8:11,279,756...11,304,920
Ensembl chr 8:11,268,859...11,305,290 		JBrowse link
G Kdm5a lysine demethylase 5A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:153,565,909...153,643,912
Ensembl chr 4:153,565,846...153,642,422 		JBrowse link
G Kdm5b lysine demethylase 5B ISO RGD PMID:23200123 RGD:7242632 NCBI chr13:46,001,589...46,073,868
Ensembl chr13:46,002,542...46,073,872 		JBrowse link
G Kdm5c lysine demethylase 5C ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:21,345,459...21,387,045
Ensembl chr  X:21,345,481...21,381,870 		JBrowse link
G Kdm5d lysine demethylase 5D ISO RGD PMID:23200123 RGD:7242632 NCBI chr  Y:527,069...624,019
Ensembl chr  Y:530,401...624,018 		JBrowse link
G Kdm6a lysine demethylase 6A ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Kdm6b lysine demethylase 6B ISO RGD PMID:23200123 RGD:7242632 NCBI chr10:54,120,716...54,142,212
Ensembl chr10:54,121,848...54,130,794 		JBrowse link
G Kdm7a lysine demethylase 7A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:67,899,407...67,974,264
Ensembl chr 4:67,904,307...67,966,998 		JBrowse link
G Kdm8 lysine demethylase 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:180,013,969...180,028,829
Ensembl chr 1:180,020,656...180,028,841 		JBrowse link
G Kmt2a lysine methyltransferase 2A ISO RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr 8:45,116,763...45,193,320
Ensembl chr 8:45,118,814...45,193,181 		JBrowse link
G Kmt2b lysine methyltransferase 2B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:85,821,700...85,840,987
Ensembl chr 1:85,821,753...85,841,326 		JBrowse link
G Kmt2c lysine methyltransferase 2C ISO RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr 4:9,620,638...9,834,787
Ensembl chr 4:9,609,627...9,833,539 		JBrowse link
G Kmt2d lysine methyltransferase 2D ISO RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr 7:129,980,744...130,022,088
Ensembl chr 7:129,962,887...130,020,325 		JBrowse link
G Kmt2e lysine methyltransferase 2E ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:11,658,218...11,727,373
Ensembl chr 4:11,658,979...11,727,373 		JBrowse link
G Kmt5a lysine methyltransferase 5A ISO RGD PMID:23200123 RGD:7242632 NCBI chr12:32,139,353...32,167,777
Ensembl chr12:32,139,178...32,162,711 		JBrowse link
G Kmt5al1 lysine methyltransferase 5A like 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:142,289,672...142,292,195 JBrowse link
G Kmt5b lysine methyltransferase 5B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:201,000,444...201,049,819
Ensembl chr 1:201,000,444...201,049,819 		JBrowse link
G Kmt5c lysine methyltransferase 5C ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:69,099,531...69,107,145
Ensembl chr 1:69,099,539...69,107,145 		JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 3:151,597,903...151,633,657
Ensembl chr 3:151,602,980...151,631,233 		JBrowse link
G Lbr lamin B receptor ISO RGD PMID:24035451 RGD:9479148 NCBI chr13:93,539,386...93,564,026
Ensembl chr13:93,538,920...93,564,017 		JBrowse link
G LOC100911617 protein arginine N-methyltransferase 6-like ISO RGD PMID:24583552 RGD:9479047
G Macroh2a1 macroH2A.1 histone ISO RGD PMID:24696452 RGD:9074213 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Macroh2a2 macroH2A.2 histone ISO RGD PMID:24696452 RGD:9074213 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891 		JBrowse link
G Mcph1 microcephalin 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr16:71,021,855...71,224,067
Ensembl chr16:71,024,588...71,224,122 		JBrowse link
G Mdc1 mediator of DNA damage checkpoint 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr20:2,893,693...2,912,394
Ensembl chr20:2,895,505...2,910,240 		JBrowse link
G Men1 menin 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871 		JBrowse link
G Mtf2 metal response element binding transcription factor 2 ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr14:1,639,256...1,683,513
Ensembl chr14:1,640,746...1,683,524 		JBrowse link
G Mysm1 myb-like, SWIRM and MPN domains 1 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 5:109,761,345...109,826,652
Ensembl chr 5:109,776,286...109,819,967 		JBrowse link
G Nap1l1 nucleosome assembly protein 1-like 1 ISO RGD PMID:23288364 RGD:9068945 NCBI chr 7:46,933,278...46,957,853
Ensembl chr 7:46,933,356...46,956,593 		JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO RGD PMID:23288364 RGD:9068945 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928 		JBrowse link
G Ncoa6 nuclear receptor coactivator 6 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 3:143,890,896...143,961,916
Ensembl chr 3:143,890,896...143,952,268 		JBrowse link
G Nsd1 nuclear receptor binding SET domain protein 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr17:9,311,963...9,426,373
Ensembl chr17:9,315,237...9,425,358 		JBrowse link
G Nsd3 nuclear receptor binding SET domain protein 3 ISO RGD PMID:23200123 RGD:7242632 NCBI chr16:66,354,030...66,466,202
Ensembl chr16:66,358,973...66,465,423 		JBrowse link
G Orc1 origin recognition complex, subunit 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 5:123,324,273...123,348,375
Ensembl chr 5:123,324,315...123,348,375 		JBrowse link
G Pagr1 Paxip1-associated glutamate-rich protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 1:181,622,698...181,625,024 JBrowse link
G Paxip1 PAX interacting protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 4:7,525,132...7,576,659
Ensembl chr 4:7,525,004...7,576,548 		JBrowse link
G Pbrm1 polybromo 1 ISO RGD PMID:24686119 RGD:9479075 NCBI chr16:6,213,507...6,312,895
Ensembl chr16:6,213,300...6,311,780 		JBrowse link
G Pcgf1 polycomb group ring finger 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 4:115,576,165...115,587,019
Ensembl chr 4:115,583,867...115,587,008 		JBrowse link
G Pcgf2 polycomb group ring finger 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr10:82,682,563...82,694,563
Ensembl chr10:82,683,553...82,693,406 		JBrowse link
G Pcgf3 polycomb group ring finger 3 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr14:1,237,594...1,291,717
Ensembl chr14:1,233,947...1,291,793 		JBrowse link
G Pcgf5 polycomb group ring finger 5 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 1:234,063,854...234,180,022
Ensembl chr 1:234,063,892...234,175,315 		JBrowse link
G Pcgf6 polycomb group ring finger 6 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 1:245,925,354...245,944,964
Ensembl chr 1:245,925,360...245,944,914 		JBrowse link
G Phc1 polyhomeotic homolog 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 4:155,510,274...155,532,636
Ensembl chr 4:155,510,274...155,533,959 		JBrowse link
G Phc2 polyhomeotic homolog 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 5:141,000,604...141,099,268
Ensembl chr 5:141,050,842...141,099,268 		JBrowse link
G Phc3 polyhomeotic homolog 3 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 2:112,408,709...112,483,719
Ensembl chr 2:112,408,531...112,476,540 		JBrowse link
G Phf1 PHD finger protein 1 ISO RGD PMID:23473600 PMID:23642229 PMID:24035451 PMID:24148750 RGD:9479058, RGD:9479074, RGD:9479148, RGD:9479059 NCBI chr20:5,017,765...5,022,872
Ensembl chr20:5,017,893...5,022,871 		JBrowse link
G Phf19 PHD finger protein 19 ISO RGD PMID:23473600 PMID:23642229 PMID:24035451 PMID:24148750 RGD:9479058, RGD:9479074, RGD:9479148, RGD:9479059 NCBI chr 3:18,175,281...18,197,289
Ensembl chr 3:18,175,282...18,196,405 		JBrowse link
G Phf2 PHD finger protein 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chr17:15,783,221...15,851,209
Ensembl chr17:15,781,864...15,851,208 		JBrowse link
G Phf8 PHD finger protein 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:20,524,103...20,623,459
Ensembl chr  X:20,524,558...20,623,410 		JBrowse link
G Prdm16 PR/SET domain 16 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:164,879,864...165,203,986
Ensembl chr 5:164,880,587...165,203,601 		JBrowse link
G Prdm2 PR/SET domain 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:155,421,066...155,531,884
Ensembl chr 5:155,422,134...155,531,825 		JBrowse link
G Prdm6 PR/SET domain 6 ISO RGD PMID:23200123 RGD:7242632 NCBI chr18:46,904,115...47,008,482
Ensembl chr18:46,904,127...47,007,823 		JBrowse link
G Prdm8 PR/SET domain 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chr14:11,403,202...11,424,059
Ensembl chr14:11,404,407...11,410,993 		JBrowse link
G Prdm9 PR/SET domain 9 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:56,505,579...56,525,726
Ensembl chr 1:56,505,579...56,525,652 		JBrowse link
G Prmt1 protein arginine methyltransferase 1 ISO RGD PMID:24583552 RGD:9479047 NCBI chr 1:95,458,853...95,468,176
Ensembl chr 1:95,458,850...95,468,345 		JBrowse link
G Prmt2 protein arginine methyltransferase 2 ISO RGD PMID:24583552 RGD:9479047 NCBI chr20:12,394,748...12,420,643
Ensembl chr20:12,394,798...12,420,643 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 ISO RGD PMID:24583552 RGD:9479047 NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296 		JBrowse link
G Prmt6 protein arginine methyltransferase 6 ISO RGD PMID:24583552 RGD:9479047 NCBI chr 2:197,927,750...197,932,760
Ensembl chr 2:197,927,220...197,933,648 		JBrowse link
G Prmt7 protein arginine methyltransferase 7 ISO RGD PMID:24583552 RGD:9479047 NCBI chr19:34,110,724...34,161,531
Ensembl chr19:34,110,747...34,162,577 		JBrowse link
G Rag2 recombination activating 2 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 3:87,902,373...87,910,227
Ensembl chr 3:87,902,238...87,911,066 		JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr 5:141,655,863...141,675,157
Ensembl chr 5:141,638,421...141,675,284
Ensembl chr 2:141,638,421...141,675,284 		JBrowse link
G Rbbp5 RB binding protein 5, histone lysine methyltransferase complex subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chr13:43,912,254...43,939,107
Ensembl chr13:43,912,254...43,939,107 		JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr  X:31,913,080...31,931,245
Ensembl chr  X:31,913,081...31,931,226 		JBrowse link
G Ring1 ring finger protein 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr20:4,830,120...4,833,623
Ensembl chr20:4,830,053...4,833,620 		JBrowse link
G Rnf2 ring finger protein 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr13:63,553,964...63,584,047
Ensembl chr13:63,554,862...63,583,099 		JBrowse link
G Setd1a SET domain containing 1A, histone lysine methyltransferase ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr 1:182,386,197...182,411,695
Ensembl chr 1:182,388,060...182,411,090 		JBrowse link
G Setd1b SET domain containing 1B, histone lysine methyltransferase ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr12:33,395,963...33,421,671
Ensembl chr12:33,396,120...33,426,934 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 8:110,511,808...110,597,475
Ensembl chr 8:110,511,772...110,597,489 		JBrowse link
G Setd7 SET domain containing 7, histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:135,562,683...135,605,468
Ensembl chr 2:135,562,683...135,605,468 		JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506 		JBrowse link
G Sgf29 SAGA complex associated factor 29 ISO RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr 1:181,238,458...181,271,931
Ensembl chr 1:181,238,468...181,274,781 		JBrowse link
G Sirt1 sirtuin 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Sirt2 sirtuin 2 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 1:84,053,883...84,076,975
Ensembl chr 1:84,052,903...84,076,975 		JBrowse link
G Sirt3 sirtuin 3 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 1:195,942,066...195,964,472
Ensembl chr 1:195,942,073...195,964,808 		JBrowse link
G Sirt4 sirtuin 4 ISO RGD PMID:21151613 RGD:9104959 NCBI chr12:41,125,533...41,139,440
Ensembl chr12:41,131,262...41,139,439 		JBrowse link
G Sirt5 sirtuin 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chr17:21,310,028...21,337,137
Ensembl chr17:21,310,028...21,337,101 		JBrowse link
G Sirt6 sirtuin 6 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
G Sirt7 sirtuin 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172 		JBrowse link
G Smarca2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 1:224,191,125...224,358,640
Ensembl chr 1:224,191,125...224,358,684 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smyd1 SET and MYND domain containing 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:103,195,330...103,252,989
Ensembl chr 4:103,200,322...103,311,766 		JBrowse link
G Smyd2 SET and MYND domain containing 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chr13:101,425,270...101,466,576
Ensembl chr13:101,425,273...101,466,576 		JBrowse link
G Smyd3 SET and MYND domain containing 3 ISO RGD PMID:23200123 RGD:7242632 NCBI chr13:90,709,263...91,266,209
Ensembl chr13:90,709,270...91,266,253 		JBrowse link
G Spin1 spindlin 1 ISO RGD PMID:24035451 RGD:9479148 NCBI chr17:14,055,685...14,105,366
Ensembl chr17:14,055,689...14,105,411 		JBrowse link
G Ssrp1 structure specific recognition protein 1 ISO RGD PMID:23288364 RGD:9068945 NCBI chr 3:70,124,371...70,134,481
Ensembl chr 3:70,118,655...70,134,482 		JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit ISO RGD PMID:23288364 RGD:9068945 NCBI chr15:24,867,697...24,904,818
Ensembl chr15:24,866,489...24,904,846 		JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:14,421,028...14,433,993
Ensembl chr  X:14,421,109...14,433,982 		JBrowse link
G Suv39h1-ps1 SUV39H1 histone lysine methyltransferase, pseudogene 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:141,792,589...141,795,257 JBrowse link
G Suv39h2 SUV39H2 histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr17:74,756,290...74,775,332
Ensembl chr17:74,756,306...74,775,332 		JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr10:64,967,035...65,012,916
Ensembl chr10:64,966,967...65,012,738 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 ISO RGD PMID:23642229 PMID:24686119 RGD:9479074, RGD:9479075 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543 		JBrowse link
G Tdrd3 tudor domain containing 3 ISO RGD PMID:24035451 PMID:23211769 RGD:9479148, RGD:9479163 NCBI chr15:63,340,531...63,497,208
Ensembl chr15:63,341,235...63,476,110 		JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822 		JBrowse link
G Trim24 tripartite motif-containing 24 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 4:66,567,342...66,692,029
Ensembl chr 4:66,566,686...66,717,241 		JBrowse link
G Trim33 tripartite motif-containing 33 ISO RGD PMID:23642229 PMID:24686119 RGD:9479074, RGD:9479075 NCBI chr 2:190,812,329...190,892,663
Ensembl chr 2:190,807,243...190,888,814 		JBrowse link
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 ISO RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr 9:1,133,117...1,154,639
Ensembl chr 9:1,134,909...1,154,631 		JBrowse link
G Usp12 ubiquitin specific peptidase 12 ISO RGD PMID:24647359 RGD:9479061 NCBI chr12:8,309,845...8,363,686
Ensembl chr12:8,309,750...8,363,656 		JBrowse link
G Usp16 ubiquitin specific peptidase 16 ISO RGD PMID:24647359 RGD:9479061 NCBI chr11:26,681,359...26,711,313
Ensembl chr11:26,681,414...26,710,539 		JBrowse link
G Usp21 ubiquitin specific peptidase 21 ISO RGD PMID:24647359 RGD:9479061 NCBI chr13:83,702,672...83,709,215
Ensembl chr13:83,702,631...83,708,717 		JBrowse link
G Usp22 ubiquitin specific peptidase 22 ISO RGD PMID:24647359 RGD:9479061 NCBI chr10:45,828,619...45,855,468
Ensembl chr10:45,828,622...45,855,497 		JBrowse link
G Usp3 ubiquitin specific peptidase 3 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 8:67,078,249...67,154,109
Ensembl chr 8:67,079,927...67,154,111 		JBrowse link
G Usp44 ubiquitin specific peptidase 44 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 7:28,364,169...28,412,039
Ensembl chr 7:28,364,033...28,410,053 		JBrowse link
G Uty ubiquitously transcribed tetratricopeptide repeat containing, Y-linked ISO RGD PMID:22663077 PMID:23200123 RGD:9479053, RGD:7242632 NCBI chr  Y:942,838...1,105,313
Ensembl chr  Y:924,168...1,103,422 		JBrowse link
G Wdr5 WD repeat domain 5 ISO RGD PMID:22663077 PMID:23642229 RGD:9479053, RGD:9479074 NCBI chr 3:10,836,964...10,856,682
Ensembl chr 3:10,837,025...10,856,671 		JBrowse link
G Wdr82 WD repeat domain 82 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438 		JBrowse link
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta ISO RGD PMID:23642229 RGD:9479074 NCBI chr 7:67,941,353...67,963,651
Ensembl chr 7:67,940,017...67,963,668 		JBrowse link
hypoxia inducible factor pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP binding cassette subfamily B member 1A ISO PID PID:200202 NCBI chr 4:25,357,467...25,529,941
Ensembl chr 4:25,158,362...25,442,709 		JBrowse link
G Abcg2 ATP binding cassette subfamily G member 2 ISO PID PID:200036 PID:200202 NCBI chr 4:87,676,241...87,802,757
Ensembl chr 4:87,745,319...87,802,409 		JBrowse link
G Adm adrenomedullin ISO PID PID:200202 NCBI chr 1:164,745,484...164,747,655
Ensembl chr 1:164,745,466...164,747,654 		JBrowse link
G Adora2a adenosine A2a receptor ISO PID PID:200036 NCBI chr20:13,315,848...13,333,386
Ensembl chr20:13,315,853...13,333,386 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO PID PID:200202 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921 		JBrowse link
G Aldoa aldolase, fructose-bisphosphate A ISO PID PID:200202 NCBI chr 1:181,402,275...181,407,476
Ensembl chr 1:181,402,275...181,406,182 		JBrowse link
G Aldoart2 aldolase 1 A retrogene 2 ISO PID PID:200202 NCBI chr 6:72,939,821...72,941,511
Ensembl chr 6:72,939,788...72,941,709 		JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO PID PID:200036 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785 		JBrowse link
G Arnt aryl hydrocarbon receptor nuclear translocator ISO PID
RGD		 PMID:22169972 PID:200036 PID:200202, RGD:6483352 NCBI chr 2:182,997,731...183,056,584
Ensembl chr 2:182,997,736...183,056,580 		JBrowse link
G Arnt2 aryl hydrocarbon receptor nuclear translocator 2 ISO RGD PMID:22169972 RGD:6483352 NCBI chr 1:138,236,235...138,392,868
Ensembl chr 1:138,189,940...138,393,153 		JBrowse link
G Bhlhe40 basic helix-loop-helix family, member e40 ISO PID PID:200036 PID:200202 NCBI chr 4:141,618,453...141,624,154
Ensembl chr 4:141,618,476...141,624,774 		JBrowse link
G Bhlhe41 basic helix-loop-helix family, member e41 ISO PID PID:200202 NCBI chr 4:178,834,264...178,838,618
Ensembl chr 4:178,834,271...178,838,468 		JBrowse link
G Bnip3 BCL2 interacting protein 3 ISO PID PID:200202 NCBI chr 1:193,708,164...193,725,348
Ensembl chr 1:193,708,167...193,725,359 		JBrowse link
G Car9 carbonic anhydrase 9 ISO PID PID:200202 NCBI chr 5:57,763,234...57,769,838
Ensembl chr 5:57,763,206...57,769,838 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO PID PID:200036 PID:200202 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cops5 COP9 signalosome subunit 5 ISO PID PID:200202 NCBI chr 5:9,192,233...9,210,498
Ensembl chr 5:9,192,100...9,210,731 		JBrowse link
G Cp ceruloplasmin ISO PID PID:200202 NCBI chr 2:102,439,433...102,498,075
Ensembl chr 2:102,439,624...102,498,075 		JBrowse link
G Creb1 cAMP responsive element binding protein 1 ISO PID PID:200202 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816 		JBrowse link
G Crebbp CREB binding protein ISO PID
RGD		 PMID:19364912 PMID:20396958 PID:200036 PID:200202, RGD:6483358, RGD:6483503 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Cul2 cullin 2 ISO RGD PMID:19364912 RGD:6483358 NCBI chr17:54,169,093...54,210,197
Ensembl chr17:54,169,086...54,209,968 		JBrowse link
G Cxcl12 C-X-C motif chemokine ligand 12 ISO PID PID:200202 NCBI chr 4:150,388,326...150,401,173
Ensembl chr 4:150,388,325...150,401,168 		JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 ISO PID PID:200202 NCBI chr13:40,077,976...40,081,883
Ensembl chr13:40,077,976...40,081,883 		JBrowse link
G Edn1 endothelin 1 ISO PID PID:200202 NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G Efna1 ephrin A1 ISO PID PID:200036 NCBI chr 2:174,681,676...174,689,061
Ensembl chr 2:174,681,682...174,690,866 		JBrowse link
G Egln1 egl-9 family hypoxia-inducible factor 1 IDA
ISO
TAS		 PID
RGD		 PMID:12876291 PMID:20396958 PMID:19364912 PMID:14597660 PID:200036 PID:200202, RGD:727754, RGD:6483503, RGD:6483358, RGD:1334466 NCBI chr19:52,867,900...52,907,308
Ensembl chr19:52,869,486...52,907,777 		JBrowse link
G Egln2 egl-9 family hypoxia-inducible factor 2 ISO PID
RGD		 PMID:20396958 PID:200036, RGD:6483503 NCBI chr 1:82,451,554...82,459,809
Ensembl chr 1:82,451,555...82,459,751 		JBrowse link
G Egln3 egl-9 family hypoxia-inducible factor 3 ISO PID
RGD		 PMID:20396958 PID:200036 PID:200202, RGD:6483503 NCBI chr 6:71,650,297...71,675,766
Ensembl chr 6:71,650,297...71,675,766 		JBrowse link
G Eif3e eukaryotic translation initiation factor 3 subunit E ISO PID PID:200036 NCBI chr 7:74,339,848...74,372,483
Ensembl chr 7:74,339,828...74,373,096 		JBrowse link
G Elk1 ETS transcription factor ELK1 ISO PID PID:200036 NCBI chr  X:1,138,826...1,155,713
Ensembl chr  X:1,139,756...1,155,713 		JBrowse link
G Elob elongin B ISO PID
RGD		 PMID:19364912 PID:200036, RGD:6483358 NCBI chr10:12,848,830...12,853,897
Ensembl chr10:12,848,827...12,853,635 		JBrowse link
G Eloc elongin C ISO PID
RGD		 PMID:19364912 PID:200036, RGD:6483358 NCBI chr 5:2,661,527...2,677,893
Ensembl chr 5:2,661,724...2,677,890
Ensembl chr20:2,661,724...2,677,890 		JBrowse link
G Eng endoglin ISO PID PID:200202 NCBI chr 3:15,934,566...15,972,618
Ensembl chr 3:15,934,518...15,973,230 		JBrowse link
G Eno1 enolase 1 ISO PID PID:200202 NCBI chr 5:160,719,951...160,731,337
Ensembl chr 5:160,719,951...160,731,336
Ensembl chr 3:160,719,951...160,731,336 		JBrowse link
G Ep300 E1A binding protein p300 ISO PID
RGD		 PMID:19364912 PMID:20396958 PID:200036 PID:200202, RGD:6483358, RGD:6483503 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Epas1 endothelial PAS domain protein 1 ISO PID
RGD		 PMID:22169972 PMID:20396958 PID:200036, RGD:6483352, RGD:6483503 NCBI chr 6:7,790,236...7,871,717
Ensembl chr 6:7,790,647...7,871,228 		JBrowse link
G Epo erythropoietin ISO PID PID:200036 PID:200202 NCBI chr12:19,204,258...19,207,948
Ensembl chr12:19,204,508...19,207,946 		JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor ISO PID PID:200036 PID:200202 NCBI chr 8:31,045,909...31,168,010
Ensembl chr 8:31,045,945...31,168,010 		JBrowse link
G Fech ferrochelatase ISO PID PID:200202 NCBI chr18:57,945,123...57,978,327
Ensembl chr18:57,945,122...57,979,348 		JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 ISO PID PID:200036 NCBI chr12:7,296,899...7,468,626
Ensembl chr12:7,297,292...7,468,626 		JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO PID PID:200202 NCBI chr 6:105,121,170...105,124,036
Ensembl chr 6:105,121,170...105,124,036 		JBrowse link
G Furin furin (paired basic amino acid cleaving enzyme) ISO PID PID:200202 NCBI chr 1:134,348,142...134,361,182
Ensembl chr 1:134,348,144...134,364,314 		JBrowse link
G Fxn frataxin ISO PID PID:200036 NCBI chr 1:221,874,007...221,897,543
Ensembl chr 1:221,872,420...221,897,540 		JBrowse link
G Gata2 GATA binding protein 2 ISO PID PID:200202 NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Gck glucokinase ISO PID PID:200202 NCBI chr14:80,785,060...80,829,842
Ensembl chr14:80,785,060...80,826,995 		JBrowse link
G Hdac7 histone deacetylase 7 ISO PID PID:200202 NCBI chr 7:128,923,918...128,961,926
Ensembl chr 7:128,923,920...128,962,072 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IDA
ISO		 PID
RGD		 PMID:12388599 PMID:20396958 PMID:22169972 PMID:18614764 PMID:15063765 PID:200202, RGD:628389, RGD:6483503, RGD:6483352, RGD:2301848, RGD:1580561 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hif1an hypoxia inducible factor 1 subunit alpha inhibitor ISO PID
RGD		 PMID:14597660 PMID:19364912 PMID:22169972 PID:200036, RGD:1334466, RGD:6483358, RGD:6483352 NCBI chr 1:243,419,175...243,440,464
Ensembl chr 1:243,419,194...243,434,327 		JBrowse link
G Hif3a hypoxia inducible factor 3 subunit alpha TAS
ISO		 RGD PMID:11237857 PMID:22169972 RGD:68201, RGD:6483352 NCBI chr 1:77,718,110...77,750,448
Ensembl chr 1:77,722,471...77,749,758 		JBrowse link
G Hk1 hexokinase 1 ISO PID PID:200202 NCBI chr20:30,230,488...30,332,099
Ensembl chr20:30,230,486...30,332,131 		JBrowse link
G Hk2 hexokinase 2 ISO PID PID:200202 NCBI chr 4:115,234,509...115,283,530
Ensembl chr 4:115,234,509...115,283,530 		JBrowse link
G Hmox1 heme oxygenase 1 ISO PID PID:200202 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079 		JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha ISO PID PID:200202 NCBI chr 3:152,186,787...152,248,320
Ensembl chr 3:152,186,787...152,248,320 		JBrowse link
G Id2 inhibitor of DNA binding 2 ISO PID PID:200202 NCBI chr 6:41,740,556...41,742,393
Ensembl chr 6:41,728,946...41,744,400 		JBrowse link
G Igfbp1 insulin-like growth factor binding protein 1 ISO PID PID:200202 NCBI chr14:82,047,415...82,052,482
Ensembl chr14:82,047,415...82,052,482 		JBrowse link
G Itgb2 integrin subunit beta 2 ISO PID PID:200202 NCBI chr20:11,061,394...11,097,656
Ensembl chr20:11,061,430...11,097,600 		JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO PID PID:200202 NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656 		JBrowse link
G Kdr kinase insert domain receptor ISO PID PID:200036 NCBI chr14:32,217,871...32,261,018
Ensembl chr14:32,217,871...32,261,018 		JBrowse link
G Ldha lactate dehydrogenase A ISO PID PID:200202 NCBI chr 1:97,371,823...97,381,247
Ensembl chr 1:97,366,021...97,433,472 		JBrowse link
G Lep leptin ISO PID PID:200202 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262 		JBrowse link
G Mcl1 MCL1 apoptosis regulator, BCL2 family member ISO PID PID:200202 NCBI chr 2:183,219,137...183,235,676
Ensembl chr 2:183,219,220...183,222,303 		JBrowse link
G Mmp14 matrix metallopeptidase 14 ISO PID PID:200036 NCBI chr15:27,887,795...27,897,020
Ensembl chr15:27,887,727...27,899,864 		JBrowse link
G Ncoa1 nuclear receptor coactivator 1 ISO PID PID:200202 NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664 		JBrowse link
G Ncoa2 nuclear receptor coactivator 2 ISO PID PID:200202 NCBI chr 5:5,835,642...6,069,693
Ensembl chr 5:5,835,706...6,067,451 		JBrowse link
G Ndrg1 N-myc downstream regulated 1 ISO PID PID:200202 NCBI chr 7:98,684,487...98,725,869
Ensembl chr 7:98,684,487...98,725,880 		JBrowse link
G Nos2 nitric oxide synthase 2 ISO PID PID:200202 NCBI chr10:63,815,308...63,851,208
Ensembl chr10:63,815,308...63,851,210 		JBrowse link
G Npm1 nucleophosmin 1 ISO PID PID:200202 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
Ensembl chr  X:17,739,941...17,751,645 		JBrowse link
G Nt5e 5' nucleotidase, ecto ISO PID PID:200202 NCBI chr 8:89,271,046...89,314,918
Ensembl chr 8:89,270,696...89,314,881 		JBrowse link
G Os9 OS9, endoplasmic reticulum lectin ISO RGD PMID:19364912 RGD:6483358 NCBI chr 7:62,915,498...62,957,591
Ensembl chr 7:62,915,515...62,943,745 		JBrowse link
G Pfkfb3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 ISO PID PID:200202 NCBI chr17:66,983,629...67,064,702
Ensembl chr17:66,983,686...67,063,125 		JBrowse link
G Pfkl phosphofructokinase, liver type ISO PID PID:200202 NCBI chr20:10,664,285...10,686,324
Ensembl chr20:10,664,272...10,686,315 		JBrowse link
G Pgk1 phosphoglycerate kinase 1 ISO PID PID:200036 PID:200202 NCBI chr  X:71,271,454...71,287,429
Ensembl chr  X:71,271,440...71,287,418 		JBrowse link
G Pgm1 phosphoglucomutase 1 ISO PID PID:200202 NCBI chr 5:114,595,298...114,654,728
Ensembl chr 5:114,595,293...114,654,728 		JBrowse link
G Pkm pyruvate kinase M1/2 ISO PID PID:200202 NCBI chr 8:60,057,629...60,079,600
Ensembl chr 8:60,057,402...60,079,599 		JBrowse link
G Plin2 perilipin 2 ISO PID PID:200202 NCBI chr 5:101,156,648...101,211,738
Ensembl chr 5:101,154,411...101,242,319 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO PID PID:200036 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Rack1 receptor for activated C kinase 1 ISO RGD PMID:19364912 RGD:6483358 NCBI chr10:33,169,415...33,174,896
Ensembl chr10:33,169,169...33,174,975 		JBrowse link
G Rbx1 ring-box 1 ISO RGD PMID:19364912 RGD:6483358 NCBI chr 7:112,976,863...113,001,051
Ensembl chr 7:112,990,835...113,001,051 		JBrowse link
G Sat1 spermidine/spermine N1-acetyl transferase 1 ISO RGD PMID:19364912 RGD:6483358 NCBI chr  X:40,158,354...40,161,641
Ensembl chr  X:40,157,046...40,196,813 		JBrowse link
G Sat2 spermidine/spermine N1-acetyltransferase family member 2 ISO RGD PMID:19364912 RGD:6483358 NCBI chr10:54,340,756...54,343,507
Ensembl chr10:54,340,372...54,343,224 		JBrowse link
G Serpine1 serpin family E member 1 ISO PID PID:200036 PID:200202 NCBI chr12:19,601,272...19,611,657
Ensembl chr12:19,601,272...19,611,657 		JBrowse link
G Sirt1 sirtuin 1 ISO PID PID:200036 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Slc11a2 solute carrier family 11 member 2 ISO PID PID:200036 NCBI chr 7:131,503,076...131,540,246
Ensembl chr 7:131,503,081...131,540,145 		JBrowse link
G Slc2a1 solute carrier family 2 member 1 ISO PID PID:200036 PID:200202 NCBI chr 5:132,717,196...132,745,416
Ensembl chr 5:132,717,196...132,745,416 		JBrowse link
G Smad3 SMAD family member 3 ISO PID PID:200202 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Smad4 SMAD family member 4 ISO PID PID:200202 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Sp1 Sp1 transcription factor ISO PID PID:200036 PID:200202 NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961 		JBrowse link
G Tert telomerase reverse transcriptase ISO PID PID:200202 NCBI chr 1:29,637,213...29,659,561
Ensembl chr 1:29,637,506...29,659,561 		JBrowse link
G Tf transferrin ISO PID PID:200202 NCBI chr 8:103,789,780...103,816,487
Ensembl chr 8:103,767,995...103,816,511 		JBrowse link
G Tff3 trefoil factor 3 ISO PID PID:200202 NCBI chr20:9,193,259...9,197,969
Ensembl chr20:9,193,262...9,198,054 		JBrowse link
G Tfrc transferrin receptor ISO PID PID:200202 NCBI chr11:68,163,413...68,185,257
Ensembl chr11:68,163,413...68,185,257 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO PID PID:200036 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Vegfa vascular endothelial growth factor A ISO PID PID:200036 PID:200202 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor ISO
IDA		 PID
RGD		 PMID:15611513 PMID:19364912 PMID:15063765 PID:200036, RGD:1358257, RGD:6483358, RGD:1580561 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
INO80 family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:11,663,112...11,666,697
Ensembl chr12:11,663,109...11,672,877 		JBrowse link
G Actl6a actin-like 6A ISO RGD PMID:21502417 RGD:9495926 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401 		JBrowse link
G Actr5 actin related protein 5 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 3:147,282,461...147,295,870
Ensembl chr 3:147,282,624...147,296,110 		JBrowse link
G Actr6 actin related protein 6 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 7:24,150,250...24,171,057
Ensembl chr 7:24,150,250...24,171,067 		JBrowse link
G Actr8 actin related protein 8 ISO RGD PMID:21502417 RGD:9495926 NCBI chr16:5,164,131...5,186,353
Ensembl chr16:5,164,129...5,178,577 		JBrowse link
G Brd8 bromodomain containing 8 ISO RGD PMID:21502417 RGD:9495926 NCBI chr18:26,204,892...26,229,999
Ensembl chr18:26,181,732...26,229,884 		JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 5:131,143,726...131,151,760
Ensembl chr 5:131,143,729...131,151,742 		JBrowse link
G Ep400 E1A binding protein p400 ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:45,891,886...46,002,523
Ensembl chr12:45,891,916...45,998,861 		JBrowse link
G Epc1 enhancer of polycomb homolog 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr17:54,503,358...54,594,444
Ensembl chr17:54,503,358...54,594,425 		JBrowse link
G Epc2 enhancer of polycomb homolog 2 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 3:33,867,219...33,967,908
Ensembl chr 3:33,867,219...33,967,150 		JBrowse link
G Ing3 inhibitor of growth family, member 3 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 4:50,477,954...50,505,168
Ensembl chr 4:50,477,962...50,503,715 		JBrowse link
G Ino80 INO80 complex ATPase subunit ISO RGD PMID:21502417 RGD:9495926 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911 		JBrowse link
G Ino80b INO80 complex subunit B ISO RGD PMID:21502417 RGD:9495926 NCBI chr 4:115,627,907...115,631,069
Ensembl chr 4:115,627,908...115,631,456 		JBrowse link
G Ino80c INO80 complex subunit C ISO RGD PMID:21502417 RGD:9495926 NCBI chr18:15,378,764...15,398,574
Ensembl chr18:15,378,770...15,393,403 		JBrowse link
G Ino80d INO80 complex subunit D ISO RGD PMID:21502417 RGD:9495926 NCBI chr 9:64,447,075...64,514,013
Ensembl chr 9:64,457,165...64,515,242 		JBrowse link
G Ino80e INO80 complex subunit E ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:181,461,406...181,472,059
Ensembl chr 1:181,461,408...181,472,469 		JBrowse link
G Kat5 lysine acetyltransferase 5 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458 		JBrowse link
G Mcrs1 microspherule protein 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 7:130,383,853...130,392,667
Ensembl chr 7:130,383,853...130,392,685 		JBrowse link
G Meaf6 MYST/Esa1-associated factor 6 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 5:137,344,681...137,369,703
Ensembl chr 5:137,344,380...137,370,014 		JBrowse link
G Morf4l1 mortality factor 4 like 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 8:90,642,988...90,664,518
Ensembl chr 8:90,642,988...90,664,519 		JBrowse link
G Morf4l2 mortality factor 4 like 2 ISO RGD PMID:21502417 RGD:9495926 NCBI chr  X:100,082,562...100,093,658
Ensembl chr  X:100,082,404...100,093,728 		JBrowse link
G Mrgbp MRG domain binding protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr 3:167,697,129...167,700,592
Ensembl chr 3:167,697,185...167,700,592 		JBrowse link
G Nfrkb nuclear factor related to kappa B binding protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr 8:29,831,802...29,863,360
Ensembl chr 8:29,831,812...29,863,359 		JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:95,902,014...95,915,247
Ensembl chr 1:95,901,701...95,915,342 		JBrowse link
G Srcap Snf2-related CREBBP activator protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:182,123,562...182,172,643
Ensembl chr 1:182,118,416...182,176,610 		JBrowse link
G Tfpt TCF3 fusion partner ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:65,587,633...65,597,407
Ensembl chr 1:65,582,359...65,611,689 		JBrowse link
G Trrap transformation/transcription domain-associated protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:9,738,006...9,827,708
Ensembl chr12:9,738,006...9,827,674 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 ISO RGD PMID:21502417 RGD:9495926 NCBI chr13:55,520,722...55,556,503
Ensembl chr13:55,520,729...55,556,502 		JBrowse link
G Vps72 vacuolar protein sorting 72 homolog ISO RGD PMID:21502417 RGD:9495926 NCBI chr 2:182,678,594...182,690,185
Ensembl chr 2:182,678,609...182,690,182 		JBrowse link
G Yeats4 YEATS domain containing 4 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 7:52,858,313...52,865,454
Ensembl chr 7:52,858,305...52,865,635 		JBrowse link
G Yy1 YY1 transcription factor ISO RGD PMID:21502417 RGD:9495926 NCBI chr 6:127,706,739...127,736,499
Ensembl chr 6:127,707,596...127,732,747 		JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880 		JBrowse link
ISWI family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz1a bromodomain adjacent to zinc finger domain, 1A ISO RGD PMID:21358755 RGD:9495920 NCBI chr 6:72,389,701...72,512,516
Ensembl chr 6:72,389,703...72,512,459 		JBrowse link
G Baz1b bromodomain adjacent to zinc finger domain, 1B ISO RGD PMID:21358755 RGD:9495920 NCBI chr12:21,431,985...21,489,956
Ensembl chr12:21,431,985...21,490,426 		JBrowse link
G Bptf bromodomain PHD finger transcription factor ISO RGD PMID:21358755 RGD:9495920 NCBI chr10:91,980,279...92,082,731
Ensembl chr10:91,982,758...92,082,769 		JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 ISO RGD PMID:21358755 RGD:9495920 NCBI chr 7:105,013,047...105,016,435
Ensembl chr 7:105,013,015...105,017,136 		JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit ISO RGD PMID:21358755 RGD:9495920 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
Ensembl chr 7:75,974,717...75,977,231 		JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO RGD PMID:21358755 RGD:9495920 NCBI chr 5:141,655,863...141,675,157
Ensembl chr 5:141,638,421...141,675,284
Ensembl chr 2:141,638,421...141,675,284 		JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor ISO RGD PMID:21358755 RGD:9495920 NCBI chr  X:31,913,080...31,931,245
Ensembl chr  X:31,913,081...31,931,226 		JBrowse link
G Smarca1 SNF2 related chromatin remodeling ATPase 1 ISO RGD PMID:21358755 RGD:9495920 NCBI chr  X:126,980,201...127,066,385
Ensembl chr  X:126,994,947...127,066,347 		JBrowse link
G Smarca5 SNF2 related chromatin remodeling ATPase 5 ISO RGD PMID:21358755 RGD:9495920 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594 		JBrowse link
nuclear factor kappa B signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb2 arrestin, beta 2 ISO PID PID:200021 NCBI chr10:55,146,887...55,154,854
Ensembl chr10:55,146,818...55,154,850 		JBrowse link
G Atm ATM serine/threonine kinase ISO PID PID:200031 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Bcl10 BCL10, immune signaling adaptor ISO PID PID:200031 NCBI chr 2:234,840,880...234,850,520
Ensembl chr 2:234,840,858...234,850,523 		JBrowse link
G Bcl3 BCL3, transcription coactivator ISO PID PID:200021 NCBI chr 1:79,471,368...79,485,908
Ensembl chr 1:79,471,369...79,485,607 		JBrowse link
G Birc2 baculoviral IAP repeat-containing 2 ISO PID PID:200031 NCBI chr 8:4,968,856...4,989,325
Ensembl chr 8:4,968,842...4,988,732 		JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase ISO RGD PMID:21135871 RGD:5490225 NCBI chr 1:244,210,299...244,380,126
Ensembl chr 1:244,210,314...244,376,721 		JBrowse link
G Chuk component of inhibitor of nuclear factor kappa B kinase complex ISO PID
RGD		 PMID:18267068 PID:200031 PID:200048, RGD:2292172 NCBI chr 1:242,959,539...242,995,066
Ensembl chr 1:242,959,760...242,995,065 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 ISO PID PID:200021 NCBI chr 3:140,709,984...140,756,757
Ensembl chr 3:140,709,991...140,756,696 		JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 ISO PID PID:200021 NCBI chr19:9,556,443...9,596,080
Ensembl chr19:9,556,260...9,596,080 		JBrowse link
G Csnk2b casein kinase 2 beta ISO PID PID:200021 NCBI chr20:3,700,363...3,705,331
Ensembl chr20:3,698,733...3,707,133 		JBrowse link
G Cul1 cullin 1 ISO RGD PMID:21135871 RGD:5490225 NCBI chr 4:76,551,952...76,625,830
Ensembl chr 4:76,551,983...76,627,980 		JBrowse link
G Cyld CYLD lysine 63 deubiquitinase ISO PID
RGD		 PMID:21119682 PMID:23312890 PID:200031, RGD:7800735, RGD:7800734 NCBI chr19:18,310,632...18,373,696
Ensembl chr19:18,314,019...18,373,658 		JBrowse link
G Erc1 ELKS/RAB6-interacting/CAST family member 1 ISO PID PID:200031 NCBI chr 4:152,763,664...153,055,724
Ensembl chr 4:152,767,419...153,055,639 		JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta ISO PID
RGD		 PMID:18267068 PID:200021 PID:200031, RGD:2292172 NCBI chr16:69,319,487...69,373,251
Ensembl chr16:69,319,554...69,373,250 		JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma ISO PID
RGD		 PMID:18267068 PID:200031, RGD:2292172 NCBI chr  X:152,216,485...152,241,476
Ensembl chr  X:152,216,596...152,239,499 		JBrowse link
G Irf1 interferon regulatory factor 1 IMP RGD PMID:15141302 RGD:5128786 NCBI chr10:37,917,155...37,924,166
Ensembl chr10:37,916,670...37,924,166 		JBrowse link
G Lck LCK proto-oncogene, Src family tyrosine kinase ISO PID PID:200021 NCBI chr 5:141,888,318...141,916,945
Ensembl chr 5:141,888,326...141,903,794 		JBrowse link
G Malt1 MALT1 paracaspase ISO PID PID:200031 NCBI chr18:58,942,282...58,996,318
Ensembl chr18:58,942,299...58,994,260 		JBrowse link
G Map3k14 mitogen-activated protein kinase kinase kinase 14 ISO PID
RGD		 PMID:18267068 PID:200048, RGD:2292172 NCBI chr10:88,165,349...88,215,558
Ensembl chr10:88,165,351...88,215,523 		JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 ISO RGD PMID:21135871 PMID:30854566 RGD:5490225, RGD:155791647 NCBI chr 5:46,356,973...46,415,597
Ensembl chr 5:46,357,931...46,415,597 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 ISO PID PID:200021 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 ISO PID
RGD		 PMID:18267068 PMID:23975431 PID:200021 PID:200031 PID:200048, RGD:2292172, RGD:40902973 NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404 		JBrowse link
G Nfkb2 nuclear factor kappa B subunit 2 ISO PID
RGD		 PMID:18267068 PID:200048, RGD:2292172 NCBI chr 1:245,164,586...245,173,225
Ensembl chr 1:245,165,950...245,173,213 		JBrowse link
G Nfkbia NFKB inhibitor alpha ISO PID
RGD		 PMID:18267068 PID:200021 PID:200031, RGD:2292172 NCBI chr 6:72,858,713...72,861,941
Ensembl chr 6:72,858,712...72,861,941 		JBrowse link
G Nfkbib NFKB inhibitor beta ISO RGD PMID:18267068 RGD:2292172 NCBI chr 1:84,046,292...84,053,862
Ensembl chr 1:84,046,295...84,053,862 		JBrowse link
G Nfkbie NFKB inhibitor epsilon ISO RGD PMID:18267068 RGD:2292172 NCBI chr 9:15,443,600...15,450,437
Ensembl chr 9:15,436,941...15,450,437 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO PID PID:200031 NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha ISO PID PID:200021 NCBI chr 2:115,175,275...115,249,034
Ensembl chr 2:115,174,984...115,249,032 		JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO PID PID:200021 NCBI chr 2:32,878,942...32,963,668
Ensembl chr 2:32,882,032...32,963,631 		JBrowse link
G Prkca protein kinase C, alpha ISO PID PID:200031 NCBI chr10:92,889,390...93,288,013
Ensembl chr10:92,894,012...93,288,012 		JBrowse link
G Ran RAN, member RAS oncogene family ISO PID PID:200031 NCBI chr12:27,674,049...27,678,598
Ensembl chr12:27,674,050...27,678,276 		JBrowse link
G Rbck1 RANBP2-type and C3HC4-type zinc finger containing 1 ISO RGD PMID:23085193 RGD:7800730 NCBI chr 3:140,789,079...140,806,017
Ensembl chr 3:140,789,080...140,806,005 		JBrowse link
G Rbx1 ring-box 1 ISO RGD PMID:21135871 RGD:5490225 NCBI chr 7:112,976,863...113,001,051
Ensembl chr 7:112,990,835...113,001,051 		JBrowse link
G Rel REL proto-oncogene, NF-kB subunit ISO PID
RGD		 PMID:18267068 PID:200021, RGD:2292172 NCBI chr14:97,690,105...97,721,194
Ensembl chr14:97,695,161...97,720,892 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit ISO PID
RGD		 PMID:18267068 PID:200021 PID:200031, RGD:2292172 NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484 		JBrowse link
G Relb RELB proto-oncogene, NF-kB subunit ISO PID PID:200048 NCBI chr 1:79,257,738...79,285,490
Ensembl chr 1:79,257,725...79,285,507 		JBrowse link
G Ripk2 receptor-interacting serine-threonine kinase 2 ISO PID PID:200031 NCBI chr 5:29,630,806...29,662,804
Ensembl chr 5:29,631,570...29,662,657 		JBrowse link
G Rnf31 ring finger protein 31 ISO RGD PMID:23085193 RGD:7800730 NCBI chr15:29,083,047...29,095,328
Ensembl chr15:29,083,631...29,101,915 		JBrowse link
G Sharpin SHANK-associated RH domain interactor ISO RGD PMID:23085193 RGD:7800730 NCBI chr 7:108,070,681...108,075,012
Ensembl chr 7:108,070,687...108,074,955 		JBrowse link
G Skp1 S-phase kinase-associated protein 1 ISO RGD PMID:21135871 RGD:5490225 NCBI chr10:36,401,987...36,417,066
Ensembl chr10:36,402,153...36,417,388 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO PID PID:200021 NCBI chr 3:146,091,969...146,139,492
Ensembl chr 3:146,091,841...146,139,476 		JBrowse link
G Sspo SCO-spondin ISO PID PID:200021 PID:200031 PID:200048 NCBI chr 4:77,394,915...77,450,526
Ensembl chr 4:77,397,059...77,450,412 		JBrowse link
G Syk spleen associated tyrosine kinase ISO PID PID:200021 NCBI chr17:12,604,615...12,678,437
Ensembl chr17:12,604,619...12,661,410 		JBrowse link
G Tab1 TGF-beta activated kinase 1/MAP3K7 binding protein 1 ISO RGD PMID:21135871 RGD:5490225 NCBI chr 7:111,675,829...111,707,058
Ensembl chr 7:111,686,371...111,707,058 		JBrowse link
G Tab2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 ISO RGD PMID:21135871 RGD:5490225 NCBI chr 1:2,375,026...2,425,115
Ensembl chr 1:2,375,490...2,424,756 		JBrowse link
G Tab3 TGF-beta activated kinase 1 (MAP3K7) binding protein 3 ISO RGD PMID:21135871 RGD:5490225 NCBI chr  X:49,972,414...50,044,658
Ensembl chr  X:49,972,330...50,042,056 		JBrowse link
G Tnf tumor necrosis factor ISO PID PID:200031 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629 		JBrowse link
G Tnfaip3 TNF alpha induced protein 3 ISO PID PID:200031 NCBI chr 1:13,709,211...13,724,291
Ensembl chr 1:13,709,206...13,725,282 		JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A ISO PID PID:200031 NCBI chr 4:158,150,815...158,163,592
Ensembl chr 4:158,150,820...158,163,591 		JBrowse link
G Traf6 TNF receptor associated factor 6 ISO PID PID:200031 NCBI chr 3:87,963,517...87,988,316
Ensembl chr 3:87,963,514...87,983,507 		JBrowse link
G Ube2d3 ubiquitin-conjugating enzyme E2D 3 ISO PID PID:200031 NCBI chr 2:223,868,397...223,899,606
Ensembl chr 2:223,868,730...223,898,081 		JBrowse link
G Xpo1 exportin 1 ISO PID PID:200031 NCBI chr14:97,233,282...97,275,536
Ensembl chr14:97,233,270...97,275,498 		JBrowse link
nuclear factor of activated T-cells signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nfatc2 nuclear factor of activated T-cells 2 ISO RGD PMID:15336966 RGD:1579951 NCBI chr 3:157,195,970...157,328,640
Ensembl chr 3:157,198,872...157,328,325 		JBrowse link
G Nfatc3 nuclear factor of activated T-cells 3 ISO RGD PMID:15336966 RGD:1579951 NCBI chr19:33,960,643...34,035,150
Ensembl chr19:33,960,852...34,035,150 		JBrowse link
G Nfatc4 nuclear factor of activated T-cells 4 ISO RGD PMID:15336966 RGD:1579951 NCBI chr15:29,286,998...29,314,610
Ensembl chr15:29,305,535...29,314,610 		JBrowse link
nuclear factor, erythroid 2 like 2 signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 BRCA1, DNA repair associated ISO RGD PMID:24647116 RGD:11535066 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase ISO RGD PMID:24647116 PMID:25937177 RGD:11535066, RGD:11535070 NCBI chr 1:244,210,299...244,380,126
Ensembl chr 1:244,210,314...244,376,721 		JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A ISO RGD PMID:24647116 RGD:11535066 NCBI chr20:7,149,177...7,159,727
Ensembl chr20:7,149,217...7,159,585 		JBrowse link
G Chd6 chromodomain helicase DNA binding protein 6 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 3:149,596,509...149,757,765
Ensembl chr 3:149,596,509...149,757,755 		JBrowse link
G Crebbp CREB binding protein ISO RGD PMID:24647116 RGD:11535066 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Cul1 cullin 1 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 4:76,551,952...76,625,830
Ensembl chr 4:76,551,983...76,627,980 		JBrowse link
G Cul3 cullin 3 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 9:81,592,641...81,670,428
Ensembl chr 9:81,592,641...81,670,462 		JBrowse link
G Dpp3 dipeptidylpeptidase 3 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 1:202,204,683...202,228,501
Ensembl chr 1:202,204,693...202,228,541 		JBrowse link
G Gadd45gip1 GADD45G interacting protein 1 ISO RGD PMID:24647116 RGD:11535066 NCBI chr19:23,320,662...23,323,211
Ensembl chr19:23,320,159...23,323,236 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha ISO RGD PMID:25937177 RGD:11535070 NCBI chr 1:80,815,843...80,825,732
Ensembl chr 1:80,815,850...80,825,802 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO RGD PMID:25937177 RGD:11535070 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646 		JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta ISO RGD PMID:24647116 RGD:11535066 NCBI chr16:69,319,487...69,373,251
Ensembl chr16:69,319,554...69,373,250 		JBrowse link
G Keap1 Kelch-like ECH-associated protein 1 IDA
ISO		 RGD PMID:20026152 PMID:24647116 PMID:26419687 RGD:6902900, RGD:11535066, RGD:11530066 NCBI chr 8:19,768,375...19,777,862
Ensembl chr 8:19,768,375...19,777,862 		JBrowse link
G Maff MAF bZIP transcription factor F ISO RGD PMID:24647116 RGD:11535066 NCBI chr 7:110,912,367...110,923,711
Ensembl chr 7:110,912,499...110,923,851 		JBrowse link
G Mafg MAF bZIP transcription factor G ISO RGD PMID:24647116 RGD:11535066 NCBI chr10:105,903,307...105,911,808
Ensembl chr10:105,903,237...105,912,026 		JBrowse link
G Mafk MAF bZIP transcription factor K ISO RGD PMID:24647116 RGD:11535066 NCBI chr12:14,834,628...14,856,414
Ensembl chr12:14,833,984...14,837,048
Ensembl chr12:14,833,984...14,837,048 		JBrowse link
G Ncoa3 nuclear receptor coactivator 3 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 3:154,738,566...154,821,395
Ensembl chr 3:154,738,581...154,818,594 		JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 ISO RGD PMID:26419687 PMID:25937177 PMID:24647116 RGD:11530066, RGD:11535070, RGD:11535066 NCBI chr 3:60,594,239...60,621,712
Ensembl chr 3:60,594,242...60,621,737 		JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 IEP RGD PMID:31889292 PMID:31432116 RGD:21201308, RGD:25823187 NCBI chr19:35,295,633...35,310,528
Ensembl chr19:35,295,573...35,310,557 		JBrowse link
G Palb2 partner and localizer of BRCA2 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990 		JBrowse link
G Pgam5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase ISO RGD PMID:24647116 RGD:11535066 NCBI chr12:46,409,324...46,416,410
Ensembl chr12:46,409,369...46,416,420 		JBrowse link
G Pten phosphatase and tensin homolog ISO RGD PMID:25937177 RGD:11535070 NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838 		JBrowse link
G Rbx1 ring-box 1 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 7:112,976,863...113,001,051
Ensembl chr 7:112,990,835...113,001,051 		JBrowse link
G Rnf4 ring finger protein 4 ISO RGD PMID:24647116 RGD:11535066 NCBI chr14:76,401,292...76,423,270
Ensembl chr14:76,401,299...76,422,566 		JBrowse link
G Siah2 siah E3 ubiquitin protein ligase 2 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 2:142,913,924...142,931,752
Ensembl chr 2:142,914,003...142,931,950 		JBrowse link
G Skp1 S-phase kinase-associated protein 1 ISO RGD PMID:24647116 RGD:11535066 NCBI chr10:36,401,987...36,417,066
Ensembl chr10:36,402,153...36,417,388 		JBrowse link
G Sqstm1 sequestosome 1 ISO RGD PMID:24647116 RGD:11535066 NCBI chr10:34,525,517...34,536,670
Ensembl chr10:34,525,519...34,536,673 		JBrowse link
p53 signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase ISO PID
RGD		 PMID:20679336 PID:200206, RGD:8662965 NCBI chr 3:14,979,853...15,083,065
Ensembl chr 3:14,979,853...15,083,065 		JBrowse link
G Adgrb1 adhesion G protein-coupled receptor B1 IEA KEGG rno:04115 NCBI chr 7:106,404,827...106,476,902
Ensembl chr 7:106,404,958...106,476,902 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO PID PID:200206 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921 		JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 IEA KEGG rno:04115 NCBI chr 7:25,494,143...25,579,540
Ensembl chr 7:25,494,609...25,579,540 		JBrowse link
G Atm ATM serine/threonine kinase ISO
IEA		 KEGG
PID
RGD		 PMID:19450511 PMID:16601750 PID:200206 rno:04115, RGD:2316155, RGD:2316156 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Atr ATR serine/threonine kinase ISO PID PID:200206 NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator IEA KEGG rno:04115 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bbc3 Bcl-2 binding component 3 IEA KEGG rno:04115 NCBI chr 1:77,013,281...77,022,509
Ensembl chr 1:77,014,543...77,022,509 		JBrowse link
G Bid BH3 interacting domain death agonist IEA KEGG rno:04115 NCBI chr 4:154,113,198...154,136,353
Ensembl chr 4:154,113,198...154,134,720 		JBrowse link
G Brca1 BRCA1, DNA repair associated ISO RGD PMID:20679336 RGD:8662965 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Casp3 caspase 3 IEA KEGG rno:04115 NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648 		JBrowse link
G Casp8 caspase 8 IEA KEGG rno:04115 NCBI chr 9:60,263,863...60,312,542
Ensembl chr 9:60,264,075...60,312,542 		JBrowse link
G Casp9 caspase 9 IEA KEGG rno:04115 NCBI chr 5:154,108,872...154,126,628
Ensembl chr 5:154,109,046...154,126,626 		JBrowse link
G Ccna2 cyclin A2 ISO PID PID:200206 NCBI chr 2:119,427,239...119,433,645
Ensembl chr 2:119,426,089...119,433,577 		JBrowse link
G Ccnb1 cyclin B1 IEA KEGG rno:04115 NCBI chr 2:31,912,190...31,921,163
Ensembl chr 2:31,912,193...31,921,172 		JBrowse link
G Ccnb2 cyclin B2 IEA KEGG rno:04115 NCBI chr 8:71,087,594...71,100,794
Ensembl chr 8:71,087,595...71,100,874 		JBrowse link
G Ccnb3 cyclin B3 IEA KEGG rno:04115 NCBI chr  X:15,478,050...15,543,292
Ensembl chr  X:15,478,065...15,542,885 		JBrowse link
G Ccnd1 cyclin D1 IEA KEGG rno:04115 NCBI chr 1:200,089,002...200,098,524
Ensembl chr 1:200,089,002...200,098,602 		JBrowse link
G Ccnd2 cyclin D2 IEA KEGG rno:04115 NCBI chr 4:159,966,883...159,989,261
Ensembl chr 4:159,962,363...159,989,495 		JBrowse link
G Ccnd3 cyclin D3 IEA KEGG rno:04115 NCBI chr 9:13,394,161...13,400,341
Ensembl chr 9:13,394,169...13,489,371 		JBrowse link
G Ccne1 cyclin E1 IEA KEGG rno:04115 NCBI chr 1:90,781,947...90,791,188
Ensembl chr 1:90,781,949...90,791,101 		JBrowse link
G Ccne2 cyclin E2 IEA KEGG rno:04115 NCBI chr 5:24,285,078...24,298,258
Ensembl chr 5:24,284,922...24,297,632 		JBrowse link
G Ccng1 cyclin G1 ISO
IEA		 PID
KEGG		 PID:200206 rno:04115 NCBI chr10:25,176,231...25,182,604
Ensembl chr10:25,176,234...25,181,641 		JBrowse link
G Ccng2 cyclin G2 IEA KEGG rno:04115 NCBI chr14:14,804,321...14,812,819
Ensembl chr14:14,804,322...14,812,830 		JBrowse link
G Cd82 Cd82 molecule IEA KEGG rno:04115 NCBI chr 3:79,387,361...79,431,847
Ensembl chr 3:79,385,887...79,431,809 		JBrowse link
G Cdk1 cyclin-dependent kinase 1 IEA KEGG rno:04115 NCBI chr20:19,266,226...19,281,417
Ensembl chr20:19,266,248...19,281,408 		JBrowse link
G Cdk2 cyclin dependent kinase 2 ISO
IEA		 PID
KEGG		 PID:200206 rno:04115 NCBI chr 7:1,129,878...1,137,431
Ensembl chr 7:1,129,811...1,137,403 		JBrowse link
G Cdk4 cyclin-dependent kinase 4 IEA KEGG rno:04115 NCBI chr 7:62,886,124...62,889,562
Ensembl chr 7:62,883,105...62,942,403 		JBrowse link
G Cdk6 cyclin-dependent kinase 6 IEA KEGG rno:04115 NCBI chr 4:30,637,650...30,829,688
Ensembl chr 4:30,646,460...30,829,634 		JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A IEA KEGG rno:04115 NCBI chr20:7,149,177...7,159,727
Ensembl chr20:7,149,217...7,159,585 		JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A IEA KEGG rno:04115 NCBI chr 5:103,984,949...103,992,143
Ensembl chr 5:103,984,949...104,003,149 		JBrowse link
G Chek1 checkpoint kinase 1 ISO
IEA		 KEGG
PID
RGD		 PMID:19450511 PMID:16601750 PID:200206 rno:04115, RGD:2316155, RGD:2316156 NCBI chr 8:36,420,565...36,443,477
Ensembl chr 8:36,420,569...36,441,009 		JBrowse link
G Chek2 checkpoint kinase 2 ISO
IEA		 KEGG
PID
RGD		 PMID:19450511 PMID:16601750 PID:200206 rno:04115, RGD:2316155, RGD:2316156 NCBI chr12:45,788,823...45,821,382
Ensembl chr12:45,788,827...45,821,286