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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:signaling pathway
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Accession:PW:0000003 term browser browse the term
Definition:The pathways where a signal - hormone, neurotransmitter, growth factor, peptide, any molecule - triggers one or multiple cascades of events. This involves a number of molecules, including receptors, proteins, ligands, messengers, any participating molecule. A signaling pathway may be upstream or downstream of other signaling pathways. Signaling pathways control a very broad spectrum of processes as well as pathways.
Comment:The definition was compiled based on a number of definitions available in various dictionaries.
Synonyms:related_synonym: Signal Transduction
 alt_id: Reactome:R-HSA-162582


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acetylcholine signaling pathway via muscarinic acetylcholine receptor term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase (Cartwright blood group) ISO RGD PMID:17786266 RGD:8549506 NCBI chrNW_004936543:856,678...862,080 JBrowse link
G Chat choline O-acetyltransferase ISO RGD PMID:23677775 RGD:8549504 NCBI chrNW_004936728:653,654...702,433 JBrowse link
G Grk2 G protein-coupled receptor kinase 2 ISO RGD PMID:23759942 RGD:8549590 NCBI chrNW_004936599:2,437,061...2,456,141 JBrowse link
G Grk5 G protein-coupled receptor kinase 5 ISO RGD PMID:19478075 RGD:8549592 NCBI chrNW_004936486:8,720,036...8,830,472 JBrowse link
G Rgs2 regulator of G protein signaling 2 ISO RGD PMID:22685433 RGD:8549594 NCBI chrNW_004936638:1,065,866...1,068,649 JBrowse link
G Rgs4 regulator of G protein signaling 4 ISO RGD PMID:22685433 RGD:8549594 NCBI chrNW_004937238:101,948...109,513 JBrowse link
G Rgs6 regulator of G protein signaling 6 ISO RGD PMID:22685433 RGD:8549594 NCBI chrNW_004936488:1,336,075...1,924,635 JBrowse link
G Slc18a3 solute carrier family 18 member A3 ISO RGD PMID:23677775 RGD:8549504 NCBI chrNW_004936728:703,688...706,317 JBrowse link
G Slc5a7 solute carrier family 5 member 7 ISO RGD PMID:23677775 RGD:8549504 NCBI chrNW_004936729:1,511,648...1,534,042 JBrowse link
acetylcholine signaling pathway via muscarinic acetylcholine receptors engaging G alphai protein family term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrm2 cholinergic receptor muscarinic 2 ISO RGD PMID:23841840 RGD:8549585 NCBI chrNW_004936592:1,396,939...1,525,255 JBrowse link
G Chrm4 cholinergic receptor muscarinic 4 ISO RGD PMID:23841840 RGD:8549585 NCBI chrNW_004936562:2,685,209...2,687,751 JBrowse link
G Gnai1 G protein subunit alpha i1 ISO RGD PMID:23759942 RGD:8549590 NCBI chrNW_004936810:353,405...435,087 JBrowse link
G Gnai2 G protein subunit alpha i2 ISO RGD PMID:23759942 RGD:8549590 NCBI chrNW_004936529:1,779,582...1,801,251 JBrowse link
acetylcholine signaling pathway via muscarinic acetylcholine receptors engaging G alphaq protein family term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrm1 cholinergic receptor muscarinic 1 ISO RGD PMID:23841840 RGD:8549585 NCBI chrNW_004936581:387,939...400,740 JBrowse link
G Chrm3 cholinergic receptor muscarinic 3 ISO RGD PMID:23841840 RGD:8549585 NCBI chrNW_004936484:13,953,141...14,373,174 JBrowse link
G Chrm5 cholinergic receptor muscarinic 5 ISO RGD PMID:23841840 RGD:8549585 NCBI chrNW_004936673:2,607,906...2,610,885 JBrowse link
G Gna11 G protein subunit alpha 11 ISO RGD PMID:23759942 RGD:8549590 NCBI chrNW_004936588:1,770,777...1,789,143 JBrowse link
G Gna14 G protein subunit alpha 14 ISO RGD PMID:23759942 RGD:8549590 NCBI chrNW_004936503:12,860,296...13,056,880 JBrowse link
G Gnaq G protein subunit alpha q ISO RGD PMID:23759942 RGD:8549590 NCBI chrNW_004936503:13,098,517...13,276,106 JBrowse link
acetylcholine signaling pathway via nicotinic acetylcholine receptor term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase (Cartwright blood group) ISO RGD PMID:17786266 RGD:8549506 NCBI chrNW_004936543:856,678...862,080 JBrowse link
G Agrn agrin ISO RGD PMID:23032192 RGD:8549508 NCBI chrNW_004936737:2,010,647...2,041,401 JBrowse link
G Chat choline O-acetyltransferase ISO RGD PMID:23677775 RGD:8549504 NCBI chrNW_004936728:653,654...702,433 JBrowse link
G Chrna1 cholinergic receptor nicotinic alpha 1 subunit ISO RGD PMID:19126755, PMID:23032192 RGD:8549508, RGD:8549510 NCBI chrNW_004936509:4,452,382...4,470,658 JBrowse link
G Chrna10 cholinergic receptor nicotinic alpha 10 subunit ISO RGD PMID:19126755 RGD:8549510 NCBI chrNW_004936498:1,224,123...1,230,640 JBrowse link
G Chrna2 cholinergic receptor nicotinic alpha 2 subunit ISO RGD PMID:19126755 RGD:8549510 NCBI chrNW_004936675:327,501...334,493 JBrowse link
G Chrna3 cholinergic receptor nicotinic alpha 3 subunit ISO RGD PMID:19126755 RGD:8549510 NCBI chrNW_004936471:36,427,598...36,447,903 JBrowse link
G Chrna4 cholinergic receptor nicotinic alpha 4 subunit ISO RGD PMID:19126755 RGD:8549510 NCBI chrNW_004936514:10,680,893...10,695,859 JBrowse link
G Chrna5 cholinergic receptor nicotinic alpha 5 subunit ISO RGD PMID:19126755 RGD:8549510 NCBI chrNW_004936471:36,451,070...36,492,774 JBrowse link
G Chrna6 cholinergic receptor nicotinic alpha 6 subunit ISO RGD PMID:19126755 RGD:8549510 NCBI chrNW_004936785:17,588...28,565 JBrowse link
G Chrna9 cholinergic receptor nicotinic alpha 9 subunit ISO RGD PMID:19126755 RGD:8549510 NCBI chrNW_004936482:7,792,292...7,801,152 JBrowse link
G Chrnb1 cholinergic receptor nicotinic beta 1 subunit ISO RGD PMID:19126755, PMID:23032192 RGD:8549508, RGD:8549510 NCBI chrNW_004936595:727,907...735,783 JBrowse link
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit ISO RGD PMID:19126755 RGD:8549510 NCBI chrNW_004936580:4,165,255...4,179,285 JBrowse link
G Chrnb3 cholinergic receptor nicotinic beta 3 subunit ISO RGD PMID:19126755 RGD:8549510 NCBI chrNW_004936785:46,076...72,529 JBrowse link
G Chrnb4 cholinergic receptor nicotinic beta 4 subunit ISO RGD PMID:19126755 RGD:8549510 NCBI chrNW_004936471:36,408,471...36,425,571 JBrowse link
G Chrnd cholinergic receptor nicotinic delta subunit ISO RGD PMID:19126755, PMID:23032192 RGD:8549508, RGD:8549510 NCBI chrNW_004936525:4,560,293...4,568,431 JBrowse link
G Chrne cholinergic receptor nicotinic epsilon subunit ISO RGD PMID:19126755, PMID:23032192 RGD:8549508, RGD:8549510 NCBI chrNW_004936677:2,809,057...2,813,838 JBrowse link
G Chrng cholinergic receptor nicotinic gamma subunit ISO RGD PMID:19126755, PMID:23032192 RGD:8549508, RGD:8549510 NCBI chrNW_004936525:4,550,987...4,556,574 JBrowse link
G Dok7 docking protein 7 ISO RGD PMID:23032192 RGD:8549508 NCBI chrNW_004936477:20,251,154...20,278,476 JBrowse link
G Lrp4 LDL receptor related protein 4 ISO RGD PMID:23032192 RGD:8549508 NCBI chrNW_004936562:2,211,519...2,262,899 JBrowse link
G Musk muscle associated receptor tyrosine kinase ISO RGD PMID:23032192 RGD:8549508 NCBI chrNW_004936559:2,387,019...2,486,685 JBrowse link
G Rapsn receptor associated protein of the synapse ISO RGD PMID:23032192 RGD:8549508 NCBI chrNW_004936562:1,796,087...1,804,153 JBrowse link
G Slc18a3 solute carrier family 18 member A3 ISO RGD PMID:23677775 RGD:8549504 NCBI chrNW_004936728:703,688...706,317 JBrowse link
G Slc5a7 solute carrier family 5 member 7 ISO RGD PMID:23677775 RGD:8549504 NCBI chrNW_004936729:1,511,648...1,534,042 JBrowse link
activin signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 ISO PID
RGD
PMID:12770730 PID:200029, RGD:1559169 NCBI chrNW_004936469:20,743,195...20,811,567 JBrowse link
G Acvr1b activin A receptor type 1B ISO RGD PMID:12770730 RGD:1559169 NCBI chrNW_004936512:9,407,578...9,449,611 JBrowse link
G Acvr2a activin A receptor type 2A ISO RGD PMID:12770730 RGD:1559169 NCBI chrNW_004936469:29,195,329...29,273,237 JBrowse link
G Acvr2b activin A receptor type 2B ISO RGD PMID:12770730 RGD:1559169 NCBI chrNW_004936473:27,816,366...27,822,555 JBrowse link
G Acvrl1 activin A receptor like type 1 ISO PID
RGD
PMID:12770730 PID:200029, RGD:1559169 NCBI chrNW_004936512:9,364,551...9,379,131 JBrowse link
G Fkbp1a FKBP prolyl isomerase 1A ISO PID PID:200029 NCBI chrNW_004936485:17,305,376...17,311,797 JBrowse link
G Smad2 SMAD family member 2 ISO RGD PMID:12770730 RGD:1559169 NCBI chrNW_004936497:14,723,199...14,812,160 JBrowse link
G Smad3 SMAD family member 3 ISO RGD PMID:12770730 RGD:1559169 NCBI chrNW_004936471:27,080,662...27,185,861 JBrowse link
adenosine monophosphate-activated protein kinase (AMPK) signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cab39 calcium binding protein 39 ISO RGD PMID:14511394, PMID:15509864 RGD:1600678, RGD:1600691 NCBI chrNW_004936525:5,955,252...6,002,917 JBrowse link
G Calm2 calmodulin 2 ISO RGD PMID:16054095 RGD:2311420 NCBI chrNW_004936508:5,207,909...5,223,780 JBrowse link
G Calm3 calmodulin 3 ISO RGD PMID:16054095 RGD:2311420 NCBI chrNW_004936664:471,446...480,858 JBrowse link
G Camkk1 calcium/calmodulin dependent protein kinase kinase 1 ISO RGD PMID:16054095 RGD:2311420 NCBI chrNW_004936677:499,897...526,537 JBrowse link
G Camkk2 calcium/calmodulin dependent protein kinase kinase 2 ISO RGD PMID:16054095 RGD:2311420 NCBI chrNW_004936558:3,030,343...3,060,191 JBrowse link
G Cpt1a carnitine palmitoyltransferase 1A ISO RGD PMID:30868489 RGD:25823184 NCBI chrNW_004936599:1,491,934...1,535,101 JBrowse link
G LOC101967074 calmodulin ISO RGD PMID:16054095 RGD:2311420 NCBI chrNW_004936488:17,580,425...17,588,480 JBrowse link
G Ppm1e protein phosphatase, Mg2+/Mn2+ dependent 1E ISO RGD PMID:20801214 RGD:7794756 NCBI chrNW_004936490:4,285,770...4,428,213 JBrowse link
G Ppm1f protein phosphatase, Mg2+/Mn2+ dependent 1F ISO RGD PMID:20801214 RGD:7794756 NCBI chrNW_004936619:1,786,223...1,816,083 JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha ISO RGD PMID:21782450 RGD:7794757 NCBI chrNW_004936599:2,345,982...2,348,494 JBrowse link
G Ppp1r3d protein phosphatase 1 regulatory subunit 3D ISO RGD PMID:21782450 RGD:7794757 NCBI chrNW_004936514:8,350,275...8,353,782 JBrowse link
G Ppp2ca protein phosphatase 2 catalytic subunit alpha ISO RGD PMID:21782450 RGD:7794757 NCBI chrNW_004936647:1,031,118...1,055,961 JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ISO RGD PMID:12829246, PMID:14511394, PMID:15509864 RGD:1600678, RGD:1600679, RGD:1600691 NCBI chrNW_004936518:1,817,051...1,843,376 JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 ISO RGD PMID:12829246, PMID:14511394, PMID:15509864 RGD:1600678, RGD:1600679, RGD:1600691 NCBI chrNW_004936522:4,872,360...4,939,873 JBrowse link
G Prkab1 protein kinase AMP-activated non-catalytic subunit beta 1 ISO RGD PMID:12829246, PMID:15509864 RGD:1600678, RGD:1600679 NCBI chrNW_004936668:1,153,791...1,165,469 JBrowse link
G Prkab2 protein kinase AMP-activated non-catalytic subunit beta 2 ISO RGD PMID:12829246, PMID:15509864 RGD:1600678, RGD:1600679 NCBI chrNW_004936953:77,671...93,383 JBrowse link
G Prkag1 protein kinase AMP-activated non-catalytic subunit gamma 1 ISO RGD PMID:12829246, PMID:14511394, PMID:15509864 RGD:1600678, RGD:1600679, RGD:1600691 NCBI chrNW_004936512:6,804,571...6,819,096 JBrowse link
G Prkag2 protein kinase AMP-activated non-catalytic subunit gamma 2 ISO RGD PMID:12829246, PMID:15509864 RGD:1600678, RGD:1600679 NCBI chrNW_004936527:6,907,723...7,168,222 JBrowse link
G Prkag3 protein kinase AMP-activated non-catalytic subunit gamma 3 ISO RGD PMID:12829246, PMID:15509864 RGD:1600678, RGD:1600679 NCBI chrNW_004936569:1,258,678...1,266,925 JBrowse link
G Stk11 serine/threonine kinase 11 ISO RGD PMID:14511394, PMID:15509864 RGD:1600678, RGD:1600691 NCBI chrNW_004936588:579,816...601,033 JBrowse link
G Strada STE20 related adaptor alpha ISO RGD PMID:14511394, PMID:15509864 RGD:1600678, RGD:1600691 NCBI chrNW_004936541:4,352,613...4,385,499 JBrowse link
G Tsc1 TSC complex subunit 1 ISO RGD PMID:31787541 RGD:25823196 NCBI chrNW_004936487:19,331,183...19,386,841 JBrowse link
adenosine signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy2 adenylate cyclase 2 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936643:47,830...338,891 JBrowse link
G Adora2a adenosine A2a receptor ISO SMPDB SMP:00320 NCBI chrNW_004936619:597,970...618,564 JBrowse link
G Adora2b adenosine A2b receptor ISO SMPDB SMP:00321 NCBI chrNW_004936821:583,463...608,189 JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936621:620,163...639,115 JBrowse link
G Arhgef7 Rho guanine nucleotide exchange factor 7 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936472:1,784,215...1,857,296 JBrowse link
G Atf2 activating transcription factor 2 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936509:4,729,984...4,826,367 JBrowse link
G Bad BCL2 associated agonist of cell death ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936599:4,924,349...4,933,683 JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936592:4,728,371...4,833,830 JBrowse link
G Cdc42 cell division cycle 42 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936474:7,556,765...7,598,687 JBrowse link
G Chuk component of inhibitor of nuclear factor kappa B kinase complex ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936636:33,933...78,990 JBrowse link
G Creb1 cAMP responsive element binding protein 1 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936631:3,721,307...3,785,346 JBrowse link
G Elk1 ETS transcription factor ELK1 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936502:13,402,726...13,418,214 JBrowse link
G Gnas GNAS complex locus ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936530:1,353,432...1,407,437 JBrowse link
G Gnb1 G protein subunit beta 1 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936737:1,518,855...1,554,926 JBrowse link
G Gng12 G protein subunit gamma 12 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936591:3,860,668...3,983,305 JBrowse link
G Hras HRas proto-oncogene, GTPase ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936888:375,372...378,125 JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936785:358,128...406,751 JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936522:3,034,364...3,037,632 JBrowse link
G Map2k2 mitogen-activated protein kinase kinase 2 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936588:2,338,127...2,377,090 JBrowse link
G Map2k7 mitogen-activated protein kinase kinase 7 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936588:4,882,191...4,891,807 JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936480:11,082,811...11,156,691 JBrowse link
G Map3k4 mitogen-activated protein kinase kinase kinase 4 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936489:11,908,083...11,972,186 JBrowse link
G Mapk1 mitogen-activated protein kinase 1 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936619:1,889,841...1,932,646 JBrowse link
G Mapk11 mitogen-activated protein kinase 11 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936629:542,143...549,861 JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936728:1,775,746...1,893,895 JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936520:733,760...850,563 JBrowse link
G Nfkb2 nuclear factor kappa B subunit 2 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936600:3,465,016...3,471,258 JBrowse link
G Nfkbia NFKB inhibitor alpha ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936494:9,537,793...9,541,187 JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936498:6,001,126...6,135,663 JBrowse link
G Pard6a par-6 family cell polarity regulator alpha ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936475:18,052,768...18,054,620 JBrowse link
G Pdpk1 3-phosphoinositide dependent protein kinase 1 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936694:1,444,819...1,487,628 JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936566:3,924,013...3,951,052 JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936608:1,353,905...1,464,636 JBrowse link
G Prkcz protein kinase C zeta ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936737:1,303,502...1,383,135 JBrowse link
G Rap1a RAP1A, member of RAS oncogene family ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936690:275,840...363,752 JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936576:5,583,847...5,746,583 JBrowse link
G Rapgef3 Rap guanine nucleotide exchange factor 3 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936512:5,636,197...5,659,606 JBrowse link
G Rps6ka1 ribosomal protein S6 kinase A1 ISO SMPDB SMP:00320, SMP:00321 NCBI chrNW_004936474:10,996,867...11,030,504 JBrowse link
adiponectin signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing ISO RGD PMID:16823476 RGD:1642395 NCBI chrNW_004936578:3,168,599...3,179,369 JBrowse link
G Adipor1 adiponectin receptor 1 ISO RGD PMID:16823476 RGD:1642395 NCBI chrNW_004936567:1,658,405...1,674,794 JBrowse link
G Adipor2 adiponectin receptor 2 ISO RGD PMID:16823476, PMID:18755807, PMID:24797033, PMID:27220557 RGD:1642395, RGD:25824939, RGD:25824940, RGD:25824943 NCBI chrNW_004936606:1,911,104...2,007,109 JBrowse link
aldosterone signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp8ap2 caspase 8 associated protein 2 ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936510:2,420,924...2,447,634 JBrowse link
G Crebbp CREB binding protein ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936694:552,447...663,237 JBrowse link
G Daxx death domain associated protein ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936476:25,546,091...25,550,390 JBrowse link
G Dhx9 DExH-box helicase 9 ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936481:6,896,487...6,934,938 JBrowse link
G Ell elongation factor for RNA polymerase II ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936596:2,745,862...2,812,513 JBrowse link
G Faf1 Fas associated factor 1 ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936522:9,774,943...10,160,987 JBrowse link
G Fkbp4 FKBP prolyl isomerase 4 ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936606:3,122,798...3,131,352 JBrowse link
G Fkbp5 FKBP prolyl isomerase 5 ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936476:23,611,166...23,702,283 JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936835:316,767...321,999 JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936476:15,830,459...15,836,994 JBrowse link
G Jak2 Janus kinase 2 ISO RGD PMID:15932931 RGD:1641841 NCBI chrNW_004936503:111,722...243,627 JBrowse link
G Ncoa1 nuclear receptor coactivator 1 ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936493:7,368,393...7,605,754 JBrowse link
G Ncoa2 nuclear receptor coactivator 2 ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936496:14,844,923...15,102,922 JBrowse link
G Ncor1 nuclear receptor corepressor 1 ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936821:382,756...538,254 JBrowse link
G Ncor2 nuclear receptor corepressor 2 ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936558:658,723...775,263 JBrowse link
G Nfyc nuclear transcription factor Y subunit gamma ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936474:22,368,279...22,432,671 JBrowse link
G Nr3c2 nuclear receptor subfamily 3 group C member 2 ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936535:1,139,687...1,467,469 JBrowse link
G Pias1 protein inhibitor of activated STAT 1 ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936471:27,925,153...28,055,632 JBrowse link
G Ppargc1a PPARG coactivator 1 alpha ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936477:4,881,230...5,488,208 JBrowse link
G Ptges3 prostaglandin E synthase 3 ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936646:969,674...990,532 JBrowse link
G Ube2i ubiquitin conjugating enzyme E2 I ISO RGD PMID:21784126 RGD:7421504 NCBI chrNW_004936694:2,561,701...2,571,284 JBrowse link
altered androgen signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor ISO RGD PMID:18008377, PMID:23759327 RGD:2326139, RGD:8693397 NCBI chrNW_004936635:485,903...647,820 JBrowse link
G Ncoa2 nuclear receptor coactivator 2 ISO RGD PMID:23759327 RGD:8693397 NCBI chrNW_004936496:14,844,923...15,102,922 JBrowse link
G Ncor2 nuclear receptor corepressor 2 ISO RGD PMID:23759327 RGD:8693397 NCBI chrNW_004936558:658,723...775,263 JBrowse link
altered clathrin-dependent synaptic vesicle endocytosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 ISO RGD PMID:25302295 RGD:10450553 NCBI chrNW_004936692:2,788,477...2,836,094 JBrowse link
G Synj1 synaptojanin 1 ISO RGD PMID:25302295 RGD:10450553 NCBI chrNW_004936500:9,484,571...9,565,980 JBrowse link
altered epidermal growth factor/neuregulin signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egf epidermal growth factor ISO RGD PMID:19506583 RGD:5490965 NCBI chrNW_004936563:1,058,803...1,181,393 JBrowse link
G Egfr epidermal growth factor receptor ISO RGD PMID:19506583, PMID:20519133, PMID:20951313 RGD:5133241, RGD:5133242, RGD:5490965 NCBI chrNW_004936678:365,005...560,546 JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO RGD PMID:19078924, PMID:21277552 RGD:4143515, RGD:5133243 NCBI chrNW_004936490:14,887,062...14,910,038 JBrowse link
G Tgfa transforming growth factor alpha ISO RGD PMID:19506583 RGD:5490965 NCBI chrNW_004936491:14,659,089...14,758,614 JBrowse link
altered Erk5 MAPK signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2k5 mitogen-activated protein kinase kinase 5 ISO RGD PMID:16376520 RGD:2298532 NCBI chrNW_004936471:27,491,255...27,728,572 JBrowse link
G Mapk7 mitogen-activated protein kinase 7 ISO RGD PMID:16376520 RGD:2298532 NCBI chrNW_004936881:372,713...377,655 JBrowse link
altered extracellular signal-regulated Raf/Mek/Erk signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO RGD PMID:17126425, PMID:18098337, PMID:20951313, PMID:21277552 RGD:2293882, RGD:2298531, RGD:5133242, RGD:5133243 NCBI chrNW_004936592:4,728,371...4,833,830 JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO RGD PMID:16112461, PMID:18772397, PMID:19078924, PMID:19506583, PMID:20951313 RGD:2306732, RGD:4143515, RGD:5133242, RGD:5490965, RGD:5490966 NCBI chrNW_004936548:2,078,568...2,113,877 JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO RGD PMID:20951313, PMID:21277552 RGD:5133242, RGD:5133243 NCBI chrNW_004936471:26,589,251...26,628,302 JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase ISO RGD PMID:17126425 RGD:2293882 NCBI chrNW_004936602:1,089,979...1,114,376 JBrowse link
altered Hedgehog signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Boc BOC cell adhesion associated, oncogene regulated ISO RGD PMID:18772397 RGD:5490966 NCBI chrNW_004936536:813,984...890,766 JBrowse link
G Dhh desert hedgehog signaling molecule ISO RGD PMID:11118005 RGD:634737 NCBI chrNW_004936512:6,885,607...6,889,955 JBrowse link
G Gli1 GLI family zinc finger 1 ISO RGD PMID:18772397, PMID:21186299 RGD:5490966, RGD:5491005 NCBI chrNW_004936646:1,622,308...1,629,787 JBrowse link
G Gli3 GLI family zinc finger 3 ISO RGD PMID:18772397 RGD:5490966 NCBI chrNW_004936478:17,129,922...17,403,630 JBrowse link
G Lrp2 LDL receptor related protein 2 ISO RGD PMID:18772397 RGD:5490966 NCBI chrNW_004936469:10,245,001...10,438,933 JBrowse link
G Shh sonic hedgehog signaling molecule ISO RGD PMID:19506583 RGD:5490965 NCBI chrNW_004936527:10,033,095...10,042,713 JBrowse link
altered hypoxia inducible factor pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vhl von Hippel-Lindau tumor suppressor ISO RGD PMID:22035299 RGD:6907133 NCBI chrNW_004936602:3,135,790...3,140,622 JBrowse link
altered insulin signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ins insulin ISO RGD PMID:9809695 RGD:2313694 NCBI chrNW_004936816:1,002,137...1,003,357 JBrowse link
G Insr insulin receptor ISO RGD PMID:9809695 RGD:2313694 NCBI chrNW_004936588:4,345,306...4,453,380 JBrowse link
altered insulin-like growth factor signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igf1 insulin like growth factor 1 ISO RGD PMID:15996002 RGD:1580474 NCBI chrNW_004936492:11,709,623...11,784,028 JBrowse link
altered integrin mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ilk integrin linked kinase ISO RGD PMID:18772397 RGD:5490966 NCBI chrNW_004936842:661,961...667,993 JBrowse link
G Itga1 integrin subunit alpha 1 ISO RGD PMID:10536667 RGD:1302875 NCBI chrNW_004936480:14,442,481...14,591,574 JBrowse link
G Itga11 integrin subunit alpha 11 ISO RGD PMID:18772397 RGD:5490966 NCBI chrNW_004936471:28,140,602...28,255,239 JBrowse link
G Itga4 integrin subunit alpha 4 ISO RGD PMID:11782963, PMID:18772397 RGD:1302879, RGD:5490966 NCBI chrNW_004936509:10,215,283...10,293,653 JBrowse link
G Itga8 integrin subunit alpha 8 ISO RGD PMID:10504498 RGD:633055 NCBI chrNW_004936574:5,985,181...6,155,067 JBrowse link
G Itga9 integrin subunit alpha 9 ISO RGD PMID:18772397 RGD:5490966 NCBI chrNW_004936473:26,875,337...27,188,747 JBrowse link
altered Jak-Stat signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jak2 Janus kinase 2 ISO RGD PMID:12032773 RGD:1357939 NCBI chrNW_004936503:111,722...243,627 JBrowse link
G Jak3 Janus kinase 3 ISO RGD PMID:12032773 RGD:1357939 NCBI chrNW_004936596:3,212,593...3,224,426 JBrowse link
altered leptin system pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Insr insulin receptor ISO increased basal hypothalamic leptin signaling without changes in leptin receptor expression after antisense-mediated hypothalamus-specific Insr knock-down RGD PMID:17585961 RGD:2290473 NCBI chrNW_004936588:4,345,306...4,453,380 JBrowse link
G Lep leptin ISO RGD PMID:11102451, PMID:15703762 RGD:1357910, RGD:61790 NCBI chrNW_004936479:15,394,966...15,411,334 JBrowse link
G Lepr leptin receptor ISO RGD PMID:11102451, PMID:15703762, PMID:17229951 RGD:1357910, RGD:1600611, RGD:61790 NCBI chrNW_004936591:5,771,371...5,846,177 JBrowse link
altered melanocortin system pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agrp agouti related neuropeptide ISO RGD PMID:15189116 RGD:1357925 NCBI chrNW_004936475:17,927,991...17,929,377 JBrowse link
G Mc4r melanocortin 4 receptor ISO RGD PMID:15189116 RGD:1357925 NCBI chrNW_004936497:4,636,370...4,638,205 JBrowse link
G Pcsk1 proprotein convertase subtilisin/kexin type 1 ISO RGD PMID:11874690, PMID:15189116 RGD:1357925, RGD:1357926 NCBI chrNW_004936523:7,009,966...7,050,300 JBrowse link
G Pomc proopiomelanocortin ISO RGD PMID:11874690, PMID:15189116 RGD:1357925, RGD:1357926 NCBI chrNW_004936493:7,060,747...7,065,276 JBrowse link
G Sdc1 syndecan 1 ISO RGD PMID:15189116 RGD:1357925 NCBI chrNW_004936493:11,177,804...11,199,678 JBrowse link
altered Notch signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 ISO RGD PMID:12548545 RGD:1334460 NCBI chrNW_004936871:666,961...670,910 JBrowse link
G Numb NUMB endocytic adaptor protein ISO RGD PMID:15492044 RGD:1334451 NCBI chrNW_004936488:2,579,017...2,742,961 JBrowse link
altered Notch signaling pathway involving promoters term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 ISO RGD PMID:12548545 RGD:1334460 NCBI chrNW_004936871:666,961...670,910 JBrowse link
altered Notch signaling pathway involving the macromolecules modifying the main players term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Numb NUMB endocytic adaptor protein ISO RGD PMID:15492044 RGD:1334451 NCBI chrNW_004936488:2,579,017...2,742,961 JBrowse link
G Psen2 presenilin 2 ISO C. elegans transgenics expressing wild-type and mutant PSEN2 RGD PMID:16474849 RGD:2302525 NCBI chrNW_004936526:3,584,194...3,611,719 JBrowse link
altered Notch signaling pathway involving the main players term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll3 delta like canonical Notch ligand 3 ISO Mutations in the gene have been associated with Spondylocostal dysostosis RGD PMID:12141422 RGD:1304493 NCBI chrNW_004936661:2,322,531...2,330,150 JBrowse link
G Jag1 jagged canonical Notch ligand 1 ISO RGD PMID:15057910 RGD:1334443 NCBI chrNW_004936485:8,857,688...8,894,270 JBrowse link
G Notch1 notch receptor 1 ISO Mutations in the dimerization and/or PEST domain have been associated with human acute T-lymphoblastic leukemias RGD PMID:15472075 RGD:1334450 NCBI chrNW_004936669:1,292,016...1,334,061 JBrowse link
G Notch3 notch receptor 3 ISO Mutations are predominantly found in the EGF repeats and clustered within the first five RGD PMID:9388399 RGD:1334441 NCBI chrNW_004936596:5,265,984...5,301,430 JBrowse link
altered p53 signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets1 ETS proto-oncogene 1, transcription factor ISO RGD PMID:22713868 RGD:8663430 NCBI chrNW_004936572:3,728,971...3,795,612 JBrowse link
G Mdm2 MDM2 proto-oncogene ISO RGD PMID:19165225, PMID:23262034 RGD:2316186, RGD:8663434 NCBI chrNW_004936545:6,709,903...6,732,334 JBrowse link
G Mdm4 MDM4 regulator of p53 ISO RGD PMID:23262034 RGD:8663434 NCBI chrNW_004936567:268,151...299,494 JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease ISO RGD PMID:23263379 RGD:8663431 NCBI chrNW_004936674:466,495...528,072 JBrowse link
G Nfya nuclear transcription factor Y subunit alpha ISO RGD PMID:22713868, PMID:23263379 RGD:8663430, RGD:8663431 NCBI chrNW_004936476:18,728,575...18,750,917 JBrowse link
G Nfyb nuclear transcription factor Y subunit beta ISO RGD PMID:22713868, PMID:23263379 RGD:8663430, RGD:8663431 NCBI chrNW_004936492:10,359,387...10,377,537 JBrowse link
G Nfyc nuclear transcription factor Y subunit gamma ISO RGD PMID:22713868, PMID:23263379 RGD:8663430, RGD:8663431 NCBI chrNW_004936474:22,368,279...22,432,671 JBrowse link
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 ISO RGD PMID:22713868 RGD:8663430 NCBI chrNW_004936659:309,530...321,294 JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 ISO RGD PMID:22713868, PMID:23263379 RGD:8663430, RGD:8663431 NCBI chrNW_004936492:115,923...174,614 JBrowse link
G Tp53 tumor protein p53 ISO RGD PMID:18772397, PMID:19078924, PMID:19165225, PMID:20951313, PMID:22713868, PMID:23263379, PMID:23759327 RGD:2316186, RGD:4143515, RGD:5133242, RGD:5490966, RGD:8663430, RGD:8663431, RGD:8693397 NCBI chrNW_004936595:919,807...935,367 JBrowse link
G Tp63 tumor protein p63 ISO RGD PMID:22713868, PMID:23263379 RGD:8663430, RGD:8663431 NCBI chrNW_004936578:492,267...705,282 JBrowse link
G Tp73 tumor protein p73 ISO RGD PMID:22713868, PMID:23263379 RGD:8663430, RGD:8663431 NCBI chrNW_004936737:171,894...211,464 JBrowse link
G Vdr vitamin D receptor ISO RGD PMID:22713868 RGD:8663430 NCBI chrNW_004936512:5,741,836...5,800,999 JBrowse link
altered phosphatidylinositol 3-kinase signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO RGD PMID:23759327 RGD:8693397 NCBI chrNW_004936566:3,924,013...3,951,052 JBrowse link
G Pten phosphatase and tensin homolog ISO RGD PMID:23759327 RGD:8693397 NCBI chrNW_004936735:1,252,414...1,338,318 JBrowse link
altered phosphatidylinositol 3-kinase-Akt signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 ISO RGD PMID:18955974, PMID:21277552 RGD:2313763, RGD:5133243 NCBI chrNW_004936621:620,163...639,115 JBrowse link
G Akt2 AKT serine/threonine kinase 2 ISO RGD PMID:15166380, PMID:18955974, PMID:19506583 RGD:2313408, RGD:2313763, RGD:5490965 NCBI chrNW_004936661:2,652,568...2,694,039 JBrowse link
G Akt3 AKT serine/threonine kinase 3 ISO RGD PMID:18955974 RGD:2313763 NCBI chrNW_004936526:6,944,056...7,201,226 JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO RGD PMID:18955974, PMID:19078924, PMID:20951313, PMID:21277552 RGD:2313763, RGD:4143515, RGD:5133242, RGD:5133243 NCBI chrNW_004936566:3,924,013...3,951,052 JBrowse link
G Pten phosphatase and tensin homolog ISO RGD PMID:18008377, PMID:18955974, PMID:19078924, PMID:19506583, PMID:20951313 RGD:2313763, RGD:2326139, RGD:4143515, RGD:5133242, RGD:5490965 NCBI chrNW_004936735:1,252,414...1,338,318 JBrowse link
altered Reelin signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 DAB adaptor protein 1 ISO RGD PMID:12670697, PMID:12764038, PMID:16266828 RGD:1358468, RGD:2324967, RGD:727518 NCBI chrNW_004936522:3,498,395...4,612,560 JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase ISO RGD PMID:12778121 RGD:2324970 NCBI chrNW_004936679:388,500...588,518 JBrowse link
G Itga3 integrin subunit alpha 3 ISO RGD PMID:15583703 RGD:2325851 NCBI chrNW_004936490:11,553,904...11,583,387 JBrowse link
G Itgb1 integrin subunit beta 1 ISO RGD PMID:15583703 RGD:2325851 NCBI chrNW_004936574:1,465,981...1,495,717 JBrowse link
G Lrp8 LDL receptor related protein 8 ISO RGD PMID:19846452 RGD:2324974 NCBI chrNW_004936522:7,740,887...7,820,488 JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 ISO RGD PMID:17330141 RGD:4107040 NCBI chrNW_004936538:8,612,142...8,693,698 JBrowse link
G Pafah1b2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 ISO RGD PMID:17330141 RGD:4107040 NCBI chrNW_004936542:2,390,904...2,417,596 JBrowse link
G Pafah1b3 platelet activating factor acetylhydrolase 1b catalytic subunit 3 ISO RGD PMID:17330141 RGD:4107040 NCBI chrNW_004936706:212,635...215,498 JBrowse link
G Reln reelin ISO RGD PMID:12670697, PMID:12764038 RGD:1358468, RGD:727518 NCBI chrNW_004936479:19,628,488...20,088,278 JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO RGD PMID:18237558 RGD:2325284 NCBI chrNW_004936561:3,826,802...3,844,406 JBrowse link
G Vldlr very low density lipoprotein receptor ISO RGD PMID:12764038 RGD:1358468 NCBI chrNW_004936503:2,407,040...2,440,366 JBrowse link
altered scatter factor/hepatocyte growth factor signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Met MET proto-oncogene, receptor tyrosine kinase ISO RGD PMID:19506583, PMID:20519133, PMID:20951313, PMID:21277552 RGD:5133241, RGD:5133242, RGD:5133243, RGD:5490965 NCBI chrNW_004936589:2,280,803...2,390,179 JBrowse link
altered transforming growth factor-beta Smad dependent signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 ISO RGD PMID:17613544, PMID:18662538 RGD:2306282, RGD:2308865 NCBI chrNW_004936497:14,723,199...14,812,160 JBrowse link
G Smad3 SMAD family member 3 ISO RGD PMID:17613544, PMID:18772397 RGD:2306282, RGD:5490966 NCBI chrNW_004936471:27,080,662...27,185,861 JBrowse link
G Smad4 SMAD family member 4 ISO RGD PMID:17613544, PMID:18662538, PMID:18772397, PMID:19506583 RGD:2306282, RGD:2308865, RGD:5490965, RGD:5490966 NCBI chrNW_004936497:12,242,869...12,278,012 JBrowse link
G Smad7 SMAD family member 7 ISO RGD PMID:18662538 RGD:2308865 NCBI chrNW_004936497:13,894,586...13,921,978 JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO RGD PMID:17613544, PMID:18313409 RGD:2299005, RGD:2306282 NCBI chrNW_004936661:3,742,080...3,758,266 JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 ISO RGD PMID:17613544, PMID:18313409 RGD:2299005, RGD:2306282 NCBI chrNW_004936524:7,656,523...7,680,043 JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 ISO RGD PMID:17613544, PMID:18313409, PMID:18662538, PMID:18772397, PMID:19506583 RGD:2299005, RGD:2306282, RGD:2308865, RGD:5490965, RGD:5490966 NCBI chrNW_004936473:21,324,669...21,409,430 JBrowse link
altered vascular endothelial growth factor signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flt4 fms related receptor tyrosine kinase 4 ISO RGD PMID:15563310 RGD:1334463 NCBI chrNW_004936739:240,572...281,925 JBrowse link
altered vascular endothelial growth factor signaling pathway involving proteins affecting its expression term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdr kinase insert domain receptor ISO RGD PMID:18221855 RGD:2292019 NCBI chrNW_004936482:17,537,697...17,581,320 JBrowse link
G Vegfa vascular endothelial growth factor A ISO RGD PMID:18221855 RGD:2292019 NCBI chrNW_004936476:16,245,134...16,261,180 JBrowse link
altered vascular endothelial growth factor signaling pathway involving the main players term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flt4 fms related receptor tyrosine kinase 4 ISO RGD PMID:15563310 RGD:1334463 NCBI chrNW_004936739:240,572...281,925 JBrowse link
G Kdr kinase insert domain receptor ISO RGD PMID:18221855 RGD:2292019 NCBI chrNW_004936482:17,537,697...17,581,320 JBrowse link
G Vegfa vascular endothelial growth factor A ISO RGD PMID:18221855 RGD:2292019 NCBI chrNW_004936476:16,245,134...16,261,180 JBrowse link
altered visual phototransduction pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936482:14,091,343...14,107,793 JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936475:9,844,438...9,908,009 JBrowse link
G Guca1b guanylate cyclase activator 1B ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936476:17,679,505...17,688,970 JBrowse link
G Pde6a phosphodiesterase 6A ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936504:5,018,171...5,088,333 JBrowse link
G Pde6b phosphodiesterase 6B ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936477:22,418,037...22,472,251 JBrowse link
G Pde6g phosphodiesterase 6G ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936594:5,263,345...5,267,240 JBrowse link
G Rho rhodopsin ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936602:896,730...901,480 JBrowse link
G Sag S-antigen visual arrestin ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936525:3,932,118...3,965,651 JBrowse link
altered Wnt signaling, canonical pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO RGD PMID:18432252 RGD:2293188 NCBI chrNW_004936531:6,899,580...7,019,016 JBrowse link
G Axin1 axin 1 ISO RGD PMID:18432252 RGD:2293188 NCBI chrNW_004936501:599,963...633,837 JBrowse link
G Axin2 axin 2 ISO RGD PMID:18432252 RGD:2293188 NCBI chrNW_004936541:7,155,963...7,242,466 JBrowse link
G Ctnnb1 catenin beta 1 ISO RGD PMID:18432252, PMID:19078924 RGD:2293188, RGD:4143515 NCBI chrNW_004936473:29,999,542...30,034,610 JBrowse link
G Lrp5 LDL receptor related protein 5 ISO RGD PMID:18432252 RGD:2293188 NCBI chrNW_004936599:1,746,309...1,814,471 JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO RGD PMID:18772397 RGD:5490966 NCBI chrNW_004936486:3,473,877...3,660,565 JBrowse link
G Wnt9a Wnt family member 9A ISO RGD PMID:18772397 RGD:5490966 NCBI chrNW_004936864:216,381...245,885 JBrowse link
androgen signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor ISO RGD PMID:16356826 RGD:2326084 NCBI chrNW_004936635:485,903...647,820 JBrowse link
G Carm1 coactivator associated arginine methyltransferase 1 ISO RGD PMID:17163421 RGD:2326123 NCBI chrNW_004936659:1,071,883...1,120,917 JBrowse link
G Crebbp CREB binding protein ISO RGD PMID:17163421 RGD:2326123 NCBI chrNW_004936694:552,447...663,237 JBrowse link
G Dnaja2 DnaJ heat shock protein family (Hsp40) member A2 ISO RGD PMID:16356826 RGD:2326084 NCBI chrNW_004936475:334,275...351,051 JBrowse link
G Ep300 E1A binding protein p300 ISO RGD PMID:17163421 RGD:2326123 NCBI chrNW_004936492:696,982...778,132 JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 ISO RGD PMID:16356826 RGD:2326084 NCBI chrNW_004936835:316,767...321,999 JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 ISO RGD PMID:16356826 RGD:2326084 NCBI chrNW_004936476:15,830,459...15,836,994 JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 ISO RGD PMID:16356826 RGD:2326084 NCBI chrNW_004936542:7,577,192...7,581,598 JBrowse link
G Ncoa1 nuclear receptor coactivator 1 ISO RGD PMID:17163421 RGD:2326123 NCBI chrNW_004936493:7,368,393...7,605,754 JBrowse link
G Ncoa2 nuclear receptor coactivator 2 ISO RGD PMID:17163421 RGD:2326123 NCBI chrNW_004936496:14,844,923...15,102,922 JBrowse link
G Ncoa3 nuclear receptor coactivator 3 ISO RGD PMID:17163421 RGD:2326123 NCBI chrNW_004936514:5,900,135...5,967,862 JBrowse link
G Ncor1 nuclear receptor corepressor 1 ISO RGD PMID:17163421 RGD:2326123 NCBI chrNW_004936821:382,756...538,254 JBrowse link
G Ncor2 nuclear receptor corepressor 2 ISO RGD PMID:17163421 RGD:2326123 NCBI chrNW_004936558:658,723...775,263 JBrowse link
G Pias2 protein inhibitor of activated STAT 2 ISO RGD PMID:9920921 RGD:70792 NCBI chrNW_004936517:72,676...152,926 JBrowse link
G Prmt1 protein arginine methyltransferase 1 ISO RGD PMID:17163421 RGD:2326123 NCBI chrNW_004936664:3,492,032...3,502,738 JBrowse link
G St13 ST13 Hsp70 interacting protein ISO RGD PMID:16356826 RGD:2326084 NCBI chrNW_004936492:976,928...1,010,748 JBrowse link
G Stip1 stress induced phosphoprotein 1 ISO RGD PMID:16356826 RGD:2326084 NCBI chrNW_004936599:4,990,867...5,005,577 JBrowse link
angiopoietin signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angpt1 angiopoietin 1 ISO RGD PMID:15714275 RGD:1578337 NCBI chrNW_004936470:37,105,469...37,328,183 JBrowse link
G Tek TEK receptor tyrosine kinase ISO RGD PMID:15714275 RGD:1578337 NCBI chrNW_004936611:2,420,176...2,531,726 JBrowse link
angiotensin (1-7) signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ace2 angiotensin I converting enzyme 2 ISO RGD PMID:15638741 RGD:1581742 NCBI chrNW_004936470:4,964,526...5,011,808 JBrowse link
G Agt angiotensinogen ISO RGD PMID:15951342 RGD:1581938 NCBI chrNW_004936484:19,713,299...19,721,144 JBrowse link
G LOC101968921 angiotensin-converting enzyme ISO RGD PMID:10642323, PMID:15283675 RGD:1581953, RGD:1598433 NCBI chrNW_004936541:4,157,847...4,178,156 JBrowse link
G Mme membrane metalloendopeptidase ISO RGD PMID:10642323, PMID:15638741, PMID:16520407 RGD:1581742, RGD:1581931, RGD:1581953 NCBI chrNW_004936519:2,513,896...2,595,896 JBrowse link
angiotensin II signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:16141358 RGD:1581847 NCBI chrNW_004936484:19,713,299...19,721,144 JBrowse link
G Agtr1 angiotensin II receptor type 1 ISO RGD PMID:15590154 RGD:1579760 NCBI chrNW_004936519:6,831,096...6,873,977 JBrowse link
G Agtr2 angiotensin II receptor type 2 ISO RGD PMID:14657020 RGD:1566502 NCBI chrNW_004936479:13,252,678...13,255,570 JBrowse link
G Jak2 Janus kinase 2 ISO RGD PMID:16269269 RGD:1600094 NCBI chrNW_004936503:111,722...243,627 JBrowse link
G LOC101968921 angiotensin-converting enzyme ISO RGD PMID:15638741 RGD:1581742 NCBI chrNW_004936541:4,157,847...4,178,156 JBrowse link
G Olr1 oxidized low density lipoprotein receptor 1 ISO RGD PMID:12661921 RGD:1580992 NCBI chrNW_004936902:405,536...416,393 JBrowse link
G Pdpk1 3-phosphoinositide dependent protein kinase 1 ISO RGD PMID:14585963 RGD:1581775 NCBI chrNW_004936694:1,444,819...1,487,628 JBrowse link
G Pla2g6 phospholipase A2 group VI ISO RGD PMID:17613534 RGD:12910844 NCBI chrNW_004936492:3,011,752...3,060,962 JBrowse link
G Prkcz protein kinase C zeta ISO RGD PMID:16113073 RGD:1642674 NCBI chrNW_004936737:1,303,502...1,383,135 JBrowse link
angiotensin II signaling pathway via AT1 receptor term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:16141358 RGD:1581847 NCBI chrNW_004936484:19,713,299...19,721,144 JBrowse link
G Agtr1 angiotensin II receptor type 1 ISO RGD PMID:9287353, PMID:10977869, PMID:12446719, PMID:14559250 RGD:1581825, RGD:2316188, RGD:5133683, RGD:629553 NCBI chrNW_004936519:6,831,096...6,873,977 JBrowse link
G Agtrap angiotensin II receptor associated protein ISO RGD PMID:17875818 RGD:2314353 NCBI chrNW_004936474:585,440...597,493 JBrowse link
G Arap1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 ISO RGD PMID:14559250 RGD:2316188 NCBI chrNW_004936498:1,953,770...2,016,875 JBrowse link
G Arrb1 arrestin beta 1 ISO RGD PMID:16304060 RGD:5133417 NCBI chrNW_004936498:4,089,621...4,172,749 JBrowse link
G Arrb2 arrestin beta 2 ISO RGD PMID:16304060 RGD:5133417 NCBI chrNW_004936677:3,173,054...3,181,475 JBrowse link
G Gna11 G protein subunit alpha 11 ISO RGD PMID:16141358 RGD:1581847 NCBI chrNW_004936588:1,770,777...1,789,143 JBrowse link
G Gnaq G protein subunit alpha q ISO RGD PMID:16141358 RGD:1581847 NCBI chrNW_004936503:13,098,517...13,276,106 JBrowse link
G Grk2 G protein-coupled receptor kinase 2 ISO RGD PMID:16304060 RGD:5133417 NCBI chrNW_004936599:2,437,061...2,456,141 JBrowse link
G Grk3 G protein-coupled receptor kinase 3 ISO RGD PMID:16304060 RGD:5133417 NCBI chrNW_004936657:425,902...522,331 JBrowse link
G Grk5 G protein-coupled receptor kinase 5 ISO RGD PMID:16304060 RGD:5133417 NCBI chrNW_004936486:8,720,036...8,830,472 JBrowse link
G Grk6 G protein-coupled receptor kinase 6 ISO RGD PMID:16304060 RGD:5133417 NCBI chrNW_004936597:1,706,671...1,722,370 JBrowse link
G Jak2 Janus kinase 2 ISO RGD PMID:9287353, PMID:9314843 RGD:5133683, RGD:6478796 NCBI chrNW_004936503:111,722...243,627 JBrowse link
G Rgs2 regulator of G protein signaling 2 ISO RGD PMID:12588881 RGD:5133418 NCBI chrNW_004936638:1,065,866...1,068,649 JBrowse link
G Tyk2 tyrosine kinase 2 ISO RGD PMID:9314843 RGD:6478796 NCBI chrNW_004936659:681,463...704,484 JBrowse link
angiotensin II signaling pathway via AT2 receptor term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:16286564, PMID:16286568, PMID:22949090 RGD:1582434, RGD:1582435, RGD:7401256 NCBI chrNW_004936484:19,713,299...19,721,144 JBrowse link
G Agtr2 angiotensin II receptor type 2 ISO RGD PMID:10977869, PMID:22949090 RGD:1581825, RGD:7401256 NCBI chrNW_004936479:13,252,678...13,255,570 JBrowse link
G Cnksr1 connector enhancer of kinase suppressor of Ras 1 ISO RGD PMID:20889352 RGD:5133679 NCBI chrNW_004936474:10,697,777...10,706,988 JBrowse link
G Dusp1 dual specificity phosphatase 1 ISO RGD PMID:18804122 RGD:5133675 NCBI chrNW_004936609:2,688,170...2,691,057 JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 ISO RGD PMID:20889352 RGD:5133679 NCBI chrNW_004936646:497,783...515,247 JBrowse link
G Gnai2 G protein subunit alpha i2 ISO RGD PMID:22949090 RGD:7401256 NCBI chrNW_004936529:1,779,582...1,801,251 JBrowse link
G Gnai3 G protein subunit alpha i3 ISO RGD PMID:22949090 RGD:7401256 NCBI chrNW_004936704:1,031,476...1,075,662 JBrowse link
G Mtus1 microtubule associated scaffold protein 1 ISO RGD PMID:20889352 RGD:5133679 NCBI chrNW_004936614:242,710...387,541 JBrowse link
G Ptpn6 protein tyrosine phosphatase non-receptor type 6 ISO RGD PMID:18804122 RGD:5133675 NCBI chrNW_004936709:864,206...884,630 JBrowse link
G Slc9a6 solute carrier family 9 member A6 ISO RGD PMID:20889352 RGD:5133679 NCBI chrNW_004936513:11,158,609...11,215,477 JBrowse link
G Timp3 TIMP metallopeptidase inhibitor 3 ISO RGD PMID:20889352 RGD:5133679 NCBI chrNW_004936492:6,996,627...7,046,137 JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 ISO RGD PMID:20889352 RGD:5133679 NCBI chrNW_004936612:389,877...570,595 JBrowse link
angiotensin III signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:11295571 RGD:1582124 NCBI chrNW_004936484:19,713,299...19,721,144 JBrowse link
G Agtr1 angiotensin II receptor type 1 ISO RGD PMID:11295571 RGD:1582124 NCBI chrNW_004936519:6,831,096...6,873,977 JBrowse link
G Agtr2 angiotensin II receptor type 2 ISO RGD PMID:11295571 RGD:1582124 NCBI chrNW_004936479:13,252,678...13,255,570 JBrowse link
G Enpep glutamyl aminopeptidase ISO RGD PMID:15638741, PMID:16537183 RGD:1581649, RGD:1581742 NCBI chrNW_004936563:1,585,450...1,665,663 JBrowse link
angiotensin III signaling pathway via AT1 receptor term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:11100981 RGD:1582152 NCBI chrNW_004936484:19,713,299...19,721,144 JBrowse link
G Agtr1 angiotensin II receptor type 1 ISO RGD PMID:11100981 RGD:1582152 NCBI chrNW_004936519:6,831,096...6,873,977 JBrowse link
angiotensin III signaling pathway via AT2 receptor term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:16380540 RGD:1582118 NCBI chrNW_004936484:19,713,299...19,721,144 JBrowse link
G Agtr2 angiotensin II receptor type 2 ISO RGD PMID:16380540 RGD:1582118 NCBI chrNW_004936479:13,252,678...13,255,570 JBrowse link
angiotensin IV signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:11282364 RGD:1582105 NCBI chrNW_004936484:19,713,299...19,721,144 JBrowse link
G Anpep alanyl aminopeptidase, membrane ISO RGD PMID:15638741, PMID:16537183 RGD:1581649, RGD:1581742 NCBI chrNW_004936483:15,563,540...15,582,521 JBrowse link
G Lnpep leucyl and cystinyl aminopeptidase ISO RGD PMID:11282364, PMID:12591177 RGD:1581864, RGD:1582105 NCBI chrNW_004936523:6,443,571...6,533,122 JBrowse link
G Rnpep arginyl aminopeptidase ISO RGD PMID:16537183 RGD:1581649 NCBI chrNW_004936567:2,504,544...2,524,977 JBrowse link
angiotensin signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:12676165 RGD:1566511 NCBI chrNW_004936484:19,713,299...19,721,144 JBrowse link
apelin signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apln apelin ISO RGD PMID:14645236 RGD:1304466 NCBI chrNW_004936479:1,889,930...1,899,811 JBrowse link
G Aplnr apelin receptor ISO RGD PMID:14645236 RGD:1304466 NCBI chrNW_004936581:5,230,836...5,234,562 JBrowse link
Arf family mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 ISO PID PID:200195 NCBI chrNW_004936664:3,562,800...3,596,983 JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 ISO PID PID:200195 NCBI chrNW_004936578:5,680,748...5,691,666 JBrowse link
G Arf1 ADP ribosylation factor 1 ISO PID PID:200195 NCBI chrNW_004936864:117,510...119,612 JBrowse link
G Arfgap1 ADP ribosylation factor GTPase activating protein 1 ISO PID PID:200195 NCBI chrNW_004936514:10,627,700...10,641,157 JBrowse link
G Arfip2 ADP ribosylation factor interacting protein 2 ISO PID PID:200195 NCBI chrNW_004936842:526,467...531,278 JBrowse link
G Arl6 ADP ribosylation factor like GTPase 6 ISO RGD PMID:15314642 RGD:1578724 NCBI chrNW_004936666:3,077,006...3,102,469 JBrowse link
G Asap1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 ISO PID PID:200195 NCBI chrNW_004936470:18,340,120...18,640,396 JBrowse link
G Cd4 CD4 molecule ISO PID PID:200195 NCBI chrNW_004936709:997,776...1,022,791 JBrowse link
G Clta clathrin light chain A ISO PID PID:200195 NCBI chrNW_004936524:4,170,425...4,191,951 JBrowse link
G Cltb clathrin light chain B ISO PID PID:200195 NCBI chrNW_004936597:665,365...689,867 JBrowse link
G Copa COPI coat complex subunit alpha ISO PID PID:200195 NCBI chrNW_004936740:301,928...347,323 JBrowse link
G Cyth2 cytohesin 2 ISO PID PID:200195 NCBI chrNW_004936664:2,566,744...2,575,201 JBrowse link
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 ISO PID PID:200195 NCBI chrNW_004936600:3,479,045...3,604,241 JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 ISO PID PID:200195 NCBI chrNW_004936594:531,844...548,487 JBrowse link
G Git1 GIT ArfGAP 1 ISO RGD PMID:9826657 RGD:68782 NCBI chrNW_004936538:5,684,660...5,694,779 JBrowse link
G Gosr2 golgi SNAP receptor complex member 2 ISO PID PID:200195 NCBI chrNW_004936541:1,845,501...1,866,014 JBrowse link
G Kdelr1 KDEL endoplasmic reticulum protein retention receptor 1 ISO PID PID:200195 NCBI chrNW_004936664:2,502,766...2,509,863 JBrowse link
G Pip5k1a phosphatidylinositol-4-phosphate 5-kinase type 1 alpha ISO PID PID:200195 NCBI chrNW_004936580:1,399,492...1,448,398 JBrowse link
G Pld2 phospholipase D2 ISO PID PID:200195 NCBI chrNW_004936677:2,870,664...2,883,545 JBrowse link
G Rac1 Rac family small GTPase 1 ISO PID PID:200195 NCBI chrNW_004936750:107,689...122,679 JBrowse link
G Uso1 USO1 vesicle transport factor ISO PID PID:200195 NCBI chrNW_004936598:172,360...246,565 JBrowse link
aryl hydrocarbon receptor signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor ISO RGD PMID:12586752 RGD:634668 NCBI chrNW_004936546:3,737,908...3,783,492 JBrowse link
G Arnt aryl hydrocarbon receptor nuclear translocator ISO RGD PMID:12586752 RGD:634668 NCBI chrNW_004936580:1,038,420...1,093,319 JBrowse link
G Arnt2 aryl hydrocarbon receptor nuclear translocator 2 ISO RGD PMID:12859947 RGD:631760 NCBI chrNW_004936483:20,041,712...20,218,853 JBrowse link
ataxia telangiectasia-mutated (ATM) signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase ISO RGD PMID:21533982, PMID:23532176 RGD:8661225, RGD:8661232 NCBI chrNW_004936551:359,134...534,672 JBrowse link
G Baz1b bromodomain adjacent to zinc finger domain 1B ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936543:2,713,575...2,779,947 JBrowse link
G Brca1 BRCA1 DNA repair associated ISO RGD PMID:24326623 RGD:8661237 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936927:341,114...380,817 JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936648:395,526...546,705 JBrowse link
G Eya3 EYA transcriptional coactivator and phosphatase 3 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936474:12,191,391...12,295,380 JBrowse link
G Kat5 lysine acetyltransferase 5 ISO RGD PMID:21533982, PMID:23532176 RGD:8661225, RGD:8661232 NCBI chrNW_004936599:3,767,526...3,775,416 JBrowse link
G Kdm4a lysine demethylase 4A ISO RGD PMID:24002223, PMID:24326623 RGD:8661237, RGD:8661242 NCBI chrNW_004936474:25,002,527...25,056,642 JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 ISO RGD PMID:24002223, PMID:24326623 RGD:8661237, RGD:8661242 NCBI chrNW_004936530:3,038,873...3,069,724 JBrowse link
G LOC101966907 histone H2AX ISO RGD PMID:21533982, PMID:24002223 RGD:8661232, RGD:8661242 NCBI chrNW_004936542:4,046,930...4,049,017 JBrowse link
G Mdc1 mediator of DNA damage checkpoint 1 ISO RGD PMID:21533982, PMID:24002223 RGD:8661232, RGD:8661242 NCBI chrNW_004936837:363,870...379,406 JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease ISO RGD PMID:21533982 RGD:8661232 NCBI chrNW_004936674:466,495...528,072 JBrowse link
G Nbn nibrin ISO RGD PMID:21533982 RGD:8661232 NCBI chrNW_004936544:3,773,828...3,812,673 JBrowse link
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936599:5,154,988...5,163,919 JBrowse link
G Pias1 protein inhibitor of activated STAT 1 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936471:27,925,153...28,055,632 JBrowse link
G Pias4 protein inhibitor of activated STAT 4 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936588:2,287,941...2,302,875 JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent 1D ISO RGD PMID:21533982, PMID:24002223 RGD:8661232, RGD:8661242 NCBI chrNW_004936490:2,139,201...2,183,850 JBrowse link
G Ppp2ca protein phosphatase 2 catalytic subunit alpha ISO RGD PMID:21533982, PMID:24002223 RGD:8661232, RGD:8661242 NCBI chrNW_004936647:1,031,118...1,055,961 JBrowse link
G Ppp4c protein phosphatase 4 catalytic subunit ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936501:12,407,968...12,416,057 JBrowse link
G Ppp6c protein phosphatase 6 catalytic subunit ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936487:13,284,652...13,320,936 JBrowse link
G Psmd14 proteasome 26S subunit, non-ATPase 14 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936469:17,494,137...17,601,045 JBrowse link
G Pwwp3a PWWP domain containing 3A, DNA repair factor ISO RGD PMID:24326623 RGD:8661237 NCBI chrNW_004936588:692,436...709,899 JBrowse link
G Rad50 RAD50 double strand break repair protein ISO RGD PMID:21533982 RGD:8661232 NCBI chrNW_004936647:2,546,100...2,637,524 JBrowse link
G Rbbp8 RB binding protein 8, endonuclease ISO RGD PMID:24326623 RGD:8661237 NCBI chrNW_004936550:2,482,915...2,554,077 JBrowse link
G Rif1 replication timing regulatory factor 1 ISO RGD PMID:24326623 RGD:8661237 NCBI chrNW_004936469:26,045,500...26,105,980 JBrowse link
G Rnf168 ring finger protein 168 ISO RGD PMID:21533982, PMID:24326623 RGD:8661232, RGD:8661237 NCBI chrNW_004936784:1,073,236...1,094,575 JBrowse link
G Rnf20 ring finger protein 20 ISO RGD PMID:23532176 RGD:8661225 NCBI chrNW_004936524:9,690,611...9,715,579 JBrowse link
G Rnf4 ring finger protein 4 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936477:21,025,040...21,055,821 JBrowse link
G Rnf40 ring finger protein 40 ISO RGD PMID:23532176 RGD:8661225 NCBI chrNW_004936501:13,154,963...13,167,211 JBrowse link
G Rnf8 ring finger protein 8 ISO RGD PMID:21533982, PMID:24326623 RGD:8661232, RGD:8661237 NCBI chrNW_004936476:22,074,146...22,121,286 JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO RGD PMID:24326623 RGD:8661237 NCBI chrNW_004936471:6,589,395...6,668,242 JBrowse link
G Trip12 thyroid hormone receptor interactor 12 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936525:6,539,234...6,690,457 JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936470:41,222,782...41,345,755 JBrowse link
G Usp16 ubiquitin specific peptidase 16 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936500:12,963,811...12,989,024 JBrowse link
G Usp3 ubiquitin specific peptidase 3 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936471:24,032,644...24,130,543 JBrowse link
G Usp44 ubiquitin specific peptidase 44 ISO RGD PMID:24002223 RGD:8661242 NCBI chrNW_004936507:11,663,069...11,692,174 JBrowse link
G Vcp valosin containing protein ISO RGD PMID:24002223, PMID:24326623 RGD:8661237, RGD:8661242 NCBI chrNW_004936524:3,085,959...3,102,461 JBrowse link
atrial natriuretic peptide signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Corin corin, serine peptidase ISO RGD PMID:17485366 RGD:1626338 NCBI chrNW_004936482:13,782,571...13,999,561 JBrowse link
G Nppa natriuretic peptide A ISO RGD PMID:12608696, PMID:15758553, PMID:16010968 RGD:1578335, RGD:1580001, RGD:1626242 NCBI chrNW_004936474:671,362...673,610 JBrowse link
G Npr1 natriuretic peptide receptor 1 ISO RGD PMID:7552344 RGD:1626243 NCBI chrNW_004936580:3,479,858...3,496,896 JBrowse link
auditory mechanotransduction pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin beta ISO RGD PMID:20624897 RGD:8547669 NCBI chrNW_004936765:667,107...670,627 JBrowse link
G Actg1 actin gamma 1 ISO RGD PMID:20624897 RGD:8547669 NCBI chrNW_004936594:5,170,711...5,173,251 JBrowse link
G Adgrv1 adhesion G protein-coupled receptor V1 ISO RGD PMID:20624897 RGD:8547669 NCBI chrNW_004936469:8,653,031...9,209,840 JBrowse link
G Cdh23 cadherin related 23 ISO RGD PMID:19804752, PMID:22177415 RGD:8547667, RGD:8547671 NCBI chrNW_004936521:7,078,874...7,285,361 JBrowse link
G Espn espin ISO RGD PMID:19804752, PMID:20624897 RGD:8547667, RGD:8547669 NCBI chrNW_004936623:1,220,435...1,249,743 JBrowse link
G LOC101965031 protocadherin-15 ISO RGD PMID:19804752, PMID:22177415 RGD:8547667, RGD:8547671 NCBI chrNW_004936910:233,800...602,145 JBrowse link
G Myo15a myosin XVA ISO RGD PMID:19804752 RGD:8547667 NCBI chrNW_004936741:1,669,680...1,724,929 JBrowse link
G Myo1c myosin IC ISO RGD PMID:19804752 RGD:8547667 NCBI chrNW_004936538:7,614,985...7,639,603 JBrowse link
G Myo3a myosin IIIA ISO RGD PMID:19804752 RGD:8547667 NCBI chrNW_004936484:1,509,248...1,723,717 JBrowse link
G Myo6 myosin VI ISO RGD PMID:20624897, PMID:22715884 RGD:8547669, RGD:8547672 NCBI chrNW_004936788:1,125,332...1,264,372 JBrowse link
G Myo7a myosin VIIA ISO RGD PMID:19804752, PMID:22177415 RGD:8547667, RGD:8547671 NCBI chrNW_004936498:5,758,572...5,824,526 JBrowse link
G Otof otoferlin ISO RGD PMID:22715884 RGD:8547672 NCBI chrNW_004936493:5,916,113...5,999,867 JBrowse link
G Pls1 plastin 1 ISO RGD PMID:20624897 RGD:8547669 NCBI chrNW_004936540:4,205,871...4,323,121 JBrowse link
G Pls3 plastin 3 ISO RGD PMID:20624897 RGD:8547669 NCBI chrNW_004936499:246,042...335,440 JBrowse link
G Ptprq protein tyrosine phosphatase receptor type Q ISO RGD PMID:20624897 RGD:8547669 NCBI chrNW_004936698:1,372,604...1,569,905 JBrowse link
G Slc17a8 solute carrier family 17 member 8 ISO RGD PMID:22715884 RGD:8547672 NCBI chrNW_004936492:13,436,136...13,486,173 JBrowse link
G Ush1c USH1 protein network component harmonin ISO RGD PMID:19804752, PMID:22177415 RGD:8547667, RGD:8547671 NCBI chrNW_004936528:1,552,175...1,594,740 JBrowse link
G Ush1g USH1 protein network component sans ISO RGD PMID:22177415 RGD:8547671 NCBI chrNW_004936594:258,115...262,739 JBrowse link
G Ush2a usherin ISO RGD PMID:20624897 RGD:8547669 NCBI chrNW_004936628:2,123,917...2,859,958 JBrowse link
G Whrn whirlin ISO RGD PMID:19804752 RGD:8547667 NCBI chrNW_004936487:3,668,465...3,748,234 JBrowse link
bile acid signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb11 ATP binding cassette subfamily B member 11 ISO RGD PMID:27090119 RGD:15090804 NCBI chrNW_004936469:10,521,576...10,599,005 JBrowse link
G Abcc2 ATP binding cassette subfamily C member 2 ISO RGD PMID:27090119 RGD:15090804 NCBI chrNW_004936636:292,631...341,999 JBrowse link
G Abcc4 ATP binding cassette subfamily C member 4 ISO RGD PMID:30223280 RGD:15045612 NCBI chrNW_004936472:14,396,986...14,624,597 JBrowse link
G Abcg5 ATP binding cassette subfamily G member 5 ISO RGD PMID:25263431 RGD:15045610 NCBI chrNW_004936508:8,093,804...8,117,467 JBrowse link
G Abcg8 ATP binding cassette subfamily G member 8 ISO RGD PMID:25263431 RGD:15045610 NCBI chrNW_004936508:8,074,697...8,093,424 JBrowse link
G Acat2 acetyl-CoA acetyltransferase 2 ISO RGD PMID:25263431 RGD:15045610 NCBI chrNW_004936489:11,255,871...11,273,848 JBrowse link
G Aldh1l1 aldehyde dehydrogenase 1 family member L1 ISO RGD PMID:30223280 RGD:15045612 NCBI chrNW_004936898:456,299...484,681 JBrowse link
G Cideb cell death inducing DFFA like effector b ISO RGD PMID:25263431 RGD:15045610 NCBI chrNW_004936722:241,484...249,935 JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 ISO RGD PMID:25263431 RGD:15045610 NCBI chrNW_004936498:4,514,212...4,544,523 JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase ISO RGD PMID:25263431 RGD:15045610 NCBI chrNW_004936549:1,378,536...1,400,501 JBrowse link
G LOC101963150 sterol 26-hydroxylase, mitochondrial ISO RGD PMID:28774887 RGD:15045601 NCBI chrNW_004936569:1,213,700...1,250,181 JBrowse link
G LOC101970910 cholesterol 7-alpha-monooxygenase ISO RGD PMID:28774887, PMID:30223280 RGD:15045601, RGD:15045612 NCBI chrNW_004936496:4,599,138...4,605,653 JBrowse link
G LOC101977223 7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase ISO RGD PMID:25263431 RGD:15045610 NCBI chrNW_004936695:2,263,868...2,265,373 JBrowse link
G Nr1h3 nuclear receptor subfamily 1 group H member 3 ISO RGD PMID:25263431 RGD:15045610 NCBI chrNW_004936562:1,937,665...1,946,680 JBrowse link
G Nr1h4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:25263431, PMID:27090119, PMID:28774887, PMID:29235094, PMID:30061734, PMID:30068870, PMID:30223280 RGD:15042870, RGD:15042872, RGD:15045601, RGD:15045610, RGD:15045612, RGD:15090804, RGD:15092071 NCBI chrNW_004936492:13,315,265...13,365,186 JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ISO RGD PMID:27090119 RGD:15090804 NCBI chrNW_004936518:1,817,051...1,843,376 JBrowse link
G Slc10a1 solute carrier family 10 member 1 ISO RGD PMID:27090119 RGD:15090804 NCBI chrNW_004936495:12,958,983...12,975,755 JBrowse link
G Slco1a2 solute carrier organic anion transporter family member 1A2 ISO RGD PMID:27090119 RGD:15090804 NCBI chrNW_004936548:5,507,085...5,562,624 JBrowse link
Bone morphogenetic proteins signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahsg alpha 2-HS glycoprotein ISO PID PID:200144 NCBI chrNW_004936578:3,332,934...3,339,903 JBrowse link
G Bambi BMP and activin membrane bound inhibitor ISO PID PID:200144 NCBI chrNW_004936613:3,098,549...3,103,868 JBrowse link
G Bmp2 bone morphogenetic protein 2 ISO PID
RGD
PMID:16361357 PID:200144, RGD:1580077 NCBI chrNW_004936485:12,428,765...12,439,570 JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO PID
RGD
PMID:18985159 PID:200144, RGD:11553861 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
G Bmp6 bone morphogenetic protein 6 ISO PID PID:200144 NCBI chrNW_004936534:4,707,658...4,871,865 JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO PID PID:200144 NCBI chrNW_004936530:71,965...143,940 JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO PID PID:200144 NCBI chrNW_004936804:52,435...115,289 JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO PID PID:200144 NCBI chrNW_004936687:2,346,601...2,595,283 JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO PID
RGD
PMID:16361357 PID:200144, RGD:1580077 NCBI chrNW_004936726:1,543,263...1,711,422 JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist ISO PID PID:200144 NCBI chrNW_004936539:8,321,432...8,323,909 JBrowse link
G Chrd chordin ISO PID PID:200144 NCBI chrNW_004936578:5,498,473...5,507,195 JBrowse link
G Chrdl1 chordin like 1 ISO PID PID:200144 NCBI chrNW_004936499:4,474,899...4,587,563 JBrowse link
G Ctdsp1 CTD small phosphatase 1 ISO PID PID:200144 NCBI chrNW_004936569:901,357...905,149 JBrowse link
G Ctdsp2 CTD small phosphatase 2 ISO PID PID:200144 NCBI chrNW_004936646:1,952,123...1,977,279 JBrowse link
G Ctdspl CTD small phosphatase like ISO PID PID:200144 NCBI chrNW_004936473:27,228,512...27,340,483 JBrowse link
G Fst follistatin ISO PID PID:200144 NCBI chrNW_004936480:13,990,967...13,997,248 JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist ISO PID PID:200144 NCBI chrNW_004936673:1,394,743...1,399,726 JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO PID PID:200144 NCBI chrNW_004936536:6,730,070...6,893,818 JBrowse link
G Hjv hemojuvelin BMP co-receptor ISO PID PID:200144 NCBI chrNW_004936867:742,539...747,035 JBrowse link
G LOC101976737 zinc finger FYVE domain-containing protein 16 ISO PID PID:200144 NCBI chrNW_004936549:8,082,464...8,110,116 JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 ISO PID PID:200144 NCBI chrNW_004936510:1,772,971...1,836,075 JBrowse link
G Mapk1 mitogen-activated protein kinase 1 ISO PID PID:200144 NCBI chrNW_004936619:1,889,841...1,932,646 JBrowse link
G Nog noggin ISO PID PID:200144 NCBI chrNW_004936490:6,262,651...6,264,069 JBrowse link
G Nup214 nucleoporin 214 ISO PID PID:200144 NCBI chrNW_004936487:17,981,402...18,067,828 JBrowse link
G Ppm1a protein phosphatase, Mg2+/Mn2+ dependent 1A ISO PID PID:200144 NCBI chrNW_004936495:4,542,576...4,560,603 JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha ISO PID PID:200144 NCBI chrNW_004936599:2,345,982...2,348,494 JBrowse link
G Ppp1r15a protein phosphatase 1 regulatory subunit 15A ISO PID PID:200144 NCBI chrNW_004936664:2,910,609...2,914,205 JBrowse link
G Rgma repulsive guidance molecule BMP co-receptor a ISO PID PID:200144 NCBI chrNW_004936483:9,753,112...9,792,817 JBrowse link
G Rgmb repulsive guidance molecule BMP co-receptor b ISO PID PID:200144 NCBI chrNW_004936523:5,050,765...5,078,777 JBrowse link
G Ski SKI proto-oncogene ISO PID PID:200144 NCBI chrNW_004936737:1,223,653...1,274,664 JBrowse link
G Slc39a13 solute carrier family 39 member 13 ISO RGD PMID:18985159 RGD:11553861 NCBI chrNW_004936562:1,811,479...1,825,857 JBrowse link
G Smad1 SMAD family member 1 ISO RGD
PID
PMID:16361357, PMID:18985159 PID:200144, RGD:11553861, RGD:1580077 NCBI chrNW_004936535:3,582,512...3,626,312 JBrowse link
G Smad4 SMAD family member 4 ISO PID PID:200144 NCBI chrNW_004936497:12,242,869...12,278,012 JBrowse link
G Smad5 SMAD family member 5 ISO RGD
PID
PMID:16361357, PMID:18985159 PID:200144, RGD:11553861, RGD:1580077 NCBI chrNW_004936597:3,225,374...3,264,604 JBrowse link
G Smad6 SMAD family member 6 ISO PID PID:200144 NCBI chrNW_004936471:26,781,420...26,856,556 JBrowse link
G Smad7 SMAD family member 7 ISO PID PID:200144 NCBI chrNW_004936497:13,894,586...13,921,978 JBrowse link
G Smad9 SMAD family member 9 ISO RGD
PID
PMID:16361357 PID:200144, RGD:1580077 NCBI chrNW_004936472:30,980,850...31,050,138 JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 ISO PID PID:200144 NCBI chrNW_004936750:1,381,864...1,406,736 JBrowse link
G Smurf2 SMAD specific E3 ubiquitin protein ligase 2 ISO PID PID:200144 NCBI chrNW_004936541:5,046,147...5,147,416 JBrowse link
G Sostdc1 sclerostin domain containing 1 ISO PID PID:200144 NCBI chrNW_004936546:2,976,045...2,980,487 JBrowse link
G Tab1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 ISO PID PID:200144 NCBI chrNW_004936492:2,207,147...2,234,573 JBrowse link
G Tab2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 ISO PID PID:200144 NCBI chrNW_004936489:2,371,953...2,421,882 JBrowse link
G Xiap X-linked inhibitor of apoptosis ISO PID PID:200144 NCBI chrNW_004936479:6,677,533...6,724,800 JBrowse link
brain natriuretic peptide signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nppb natriuretic peptide B ISO RGD PMID:7552344 RGD:1626243 NCBI chrNW_004936474:683,325...684,662 JBrowse link
G Npr1 natriuretic peptide receptor 1 ISO RGD PMID:7552344 RGD:1626243 NCBI chrNW_004936580:3,479,858...3,496,896 JBrowse link
brain-derived neurotrophic factor signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain derived neurotrophic factor ISO RGD PMID:23670594 RGD:11062158 NCBI chrNW_004936540:5,530,081...5,582,765 JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 ISO RGD PMID:23670594 RGD:11062158 NCBI chrNW_004936545:7,286,018...7,407,623 JBrowse link
G Grb2 growth factor receptor bound protein 2 ISO RGD PMID:23670594 RGD:11062158 NCBI chrNW_004936594:592,760...661,369 JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 ISO RGD PMID:23670594 RGD:11062158 NCBI chrNW_004936680:267,850...621,467 JBrowse link
G Shc1 SHC adaptor protein 1 ISO RGD PMID:23670594 RGD:11062158 NCBI chrNW_004936580:4,511,560...4,522,003 JBrowse link
G Tiam1 TIAM Rac1 associated GEF 1 ISO RGD PMID:23670594 RGD:11062158 NCBI chrNW_004936500:10,451,599...10,812,239 JBrowse link
c-Jun N-terminal kinases MAPK signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 ISO RGD PMID:8910292, PMID:9305638 RGD:2293876, RGD:2293879 NCBI chrNW_004936474:7,556,765...7,598,687 JBrowse link
G Dusp1 dual specificity phosphatase 1 ISO RGD PMID:17208316 RGD:2293881 NCBI chrNW_004936609:2,688,170...2,691,057 JBrowse link
G Dusp10 dual specificity phosphatase 10 ISO RGD PMID:17208316 RGD:2293881 NCBI chrNW_004936650:679,650...718,867 JBrowse link
G Dusp16 dual specificity phosphatase 16 ISO RGD PMID:17208316 RGD:2293881 NCBI chrNW_004936587:4,711,085...4,801,030 JBrowse link
G Dusp19 dual specificity phosphatase 19 ISO RGD PMID:11959862 RGD:2314491 NCBI chrNW_004936509:11,653,282...11,670,425 JBrowse link
G Dusp8 dual specificity phosphatase 8 ISO RGD PMID:17208316 RGD:2293881 NCBI chrNW_004936816:414,506...430,491 JBrowse link
G Map2k4 mitogen-activated protein kinase kinase 4 ISO RGD PMID:10051439, PMID:12524169, PMID:17064355, PMID:17306896 RGD:2293875, RGD:2298561, RGD:2298577, RGD:2298708 NCBI chrNW_004936595:4,762,327...4,828,433 JBrowse link
G Map2k7 mitogen-activated protein kinase kinase 7 ISO RGD PMID:10051439, PMID:15680699, PMID:17064355, PMID:17306896 RGD:2293875, RGD:2298561, RGD:2298567, RGD:2298577 NCBI chrNW_004936588:4,882,191...4,891,807 JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 ISO RGD PMID:9305638, PMID:17306896 RGD:2293875, RGD:2293879 NCBI chrNW_004936480:11,082,811...11,156,691 JBrowse link
G Map3k10 mitogen-activated protein kinase kinase kinase 10 ISO RGD PMID:17306896 RGD:2293875 NCBI chrNW_004936661:2,623,356...2,638,218 JBrowse link
G Map3k11 mitogen-activated protein kinase kinase kinase 11 ISO RGD PMID:8910292, PMID:15680699, PMID:17064355, PMID:17306896 RGD:2293875, RGD:2293876, RGD:2298567, RGD:2298577 NCBI chrNW_004936599:3,847,637...3,862,895 JBrowse link
G Map3k12 mitogen-activated protein kinase kinase kinase 12 ISO RGD PMID:17306896 RGD:2293875 NCBI chrNW_004936512:10,755,653...10,773,321 JBrowse link
G Map3k13 mitogen-activated protein kinase kinase kinase 13 ISO RGD PMID:17306896 RGD:2293875 NCBI chrNW_004936578:4,363,361...4,461,133 JBrowse link
G Map3k2 mitogen-activated protein kinase kinase kinase 2 ISO RGD PMID:9305638, PMID:17306896 RGD:2293875, RGD:2293879 NCBI chrNW_004936469:43,880,816...43,958,556 JBrowse link
G Map3k20 mitogen-activated protein kinase kinase kinase 20 ISO RGD PMID:17306896 RGD:2293875 NCBI chrNW_004936509:3,029,942...3,203,319 JBrowse link
G Map3k21 mitogen-activated protein kinase kinase kinase 21 ISO RGD PMID:17306896 RGD:2293875 NCBI chrNW_004936484:18,310,989...18,350,084 JBrowse link
G Map3k3 mitogen-activated protein kinase kinase kinase 3 ISO RGD PMID:9305638, PMID:17306896 RGD:2293875, RGD:2293879 NCBI chrNW_004936541:4,276,371...4,345,239 JBrowse link
G Map3k4 mitogen-activated protein kinase kinase kinase 4 ISO RGD PMID:9305638, PMID:17306896 RGD:2293875, RGD:2293879 NCBI chrNW_004936489:11,908,083...11,972,186 JBrowse link
G Map3k5 mitogen-activated protein kinase kinase kinase 5 ISO RGD PMID:12215209, PMID:17306896 RGD:2293875, RGD:2296020 NCBI chrNW_004936560:3,988,696...4,197,953 JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 ISO RGD PMID:17306896 RGD:2293875 NCBI chrNW_004936510:1,772,971...1,836,075 JBrowse link
G Map3k9 mitogen-activated protein kinase kinase kinase 9 ISO RGD PMID:17306896 RGD:2293875 NCBI chrNW_004936488:355,906...386,829 JBrowse link
G Mapk10 mitogen-activated protein kinase 10 ISO RGD PMID:10051439, PMID:15680699, PMID:17306896 RGD:2293875, RGD:2298561, RGD:2298567 NCBI chrNW_004936896:228,908...539,836 JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO RGD PMID:10051439, PMID:17064355, PMID:17306896 RGD:2293875, RGD:2298561, RGD:2298577 NCBI chrNW_004936728:1,775,746...1,893,895 JBrowse link
G Mapk8ip1 mitogen-activated protein kinase 8 interacting protein 1 ISO RGD PMID:15816852, PMID:17726577 RGD:1579811, RGD:2293880 NCBI chrNW_004936562:3,113,217...3,122,794 JBrowse link
G Mapk8ip2 mitogen-activated protein kinase 8 interacting protein 2 ISO RGD PMID:17726577 RGD:2293880 NCBI chrNW_004936629:201,269...211,058 JBrowse link
G Mapk8ip3 mitogen-activated protein kinase 8 interacting protein 3 ISO RGD PMID:17726577 RGD:2293880 NCBI chrNW_004936694:2,223,020...2,263,388 JBrowse link
G Mapk9 mitogen-activated protein kinase 9 ISO RGD PMID:10051439, PMID:17064355, PMID:17306896 RGD:2293875, RGD:2298561, RGD:2298577 NCBI chrNW_004936739:551,678...602,027 JBrowse link
G Rac1 Rac family small GTPase 1 ISO RGD PMID:8910292, PMID:9305638 RGD:2293876, RGD:2293879 NCBI chrNW_004936750:107,689...122,679 JBrowse link
G Rapgef1 Rap guanine nucleotide exchange factor 1 ISO RGD PMID:10811109 RGD:11534984 NCBI chrNW_004936487:18,305,537...18,411,170 JBrowse link
G Spp1 secreted phosphoprotein 1 ISO RGD PMID:15757900 RGD:1581337 NCBI chrNW_004936905:148,956...156,023 JBrowse link
G Traf2 TNF receptor associated factor 2 ISO RGD PMID:12215209 RGD:2296020 NCBI chrNW_004936669:1,004,891...1,034,913 JBrowse link
C-type natriuretic peptide signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nppc natriuretic peptide C ISO RGD PMID:15337698, PMID:16537417 RGD:1580149, RGD:1601488 NCBI chrNW_004936525:5,092,675...5,099,344 JBrowse link
G Npr2 natriuretic peptide receptor 2 ISO RGD PMID:16537417 RGD:1601488 NCBI chrNW_004936524:3,779,398...3,798,074 JBrowse link
G Npr3 natriuretic peptide receptor 3 ISO RGD PMID:15044621 RGD:1581459 NCBI chrNW_004936518:8,093,111...8,158,862 JBrowse link
cadherin mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh2 cadherin 2 ISO RGD PMID:16515795 RGD:1582675 NCBI chrNW_004936550:6,885,484...7,067,001 JBrowse link
calcineurin signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nfatc2 nuclear factor of activated T cells 2 ISO RGD PMID:15336966 RGD:1579951 NCBI chrNW_004936514:3,453,475...3,579,292 JBrowse link
G Nfatc3 nuclear factor of activated T cells 3 ISO RGD PMID:15336966 RGD:1579951 NCBI chrNW_004936475:18,462,424...18,557,832 JBrowse link
G Nfatc4 nuclear factor of activated T cells 4 ISO RGD PMID:15336966 RGD:1579951 NCBI chrNW_004936722:178,866...187,847 JBrowse link
G Ppp3ca protein phosphatase 3 catalytic subunit alpha ISO RGD PMID:15336966 RGD:1579951 NCBI chrNW_004936520:1,987,989...2,146,473 JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta ISO RGD PMID:15336966 RGD:1579951 NCBI chrNW_004936521:5,576,705...5,614,738 JBrowse link
G Ppp3cc protein phosphatase 3 catalytic subunit gamma ISO RGD PMID:15336966 RGD:1579951 NCBI chrNW_004936555:6,216,202...6,283,012 JBrowse link
G Ppp3r1 protein phosphatase 3 regulatory subunit B, alpha ISO RGD PMID:15336966 RGD:1579951 NCBI chrNW_004936491:12,623,931...12,654,463 JBrowse link
G Ppp3r2 protein phosphatase 3 regulatory subunit B, beta ISO RGD PMID:15336966 RGD:1579951 NCBI chrNW_004936524:9,742,788...9,743,327 JBrowse link
G Rcan1 regulator of calcineurin 1 ISO RGD PMID:16415348 RGD:1581652 NCBI chrNW_004936500:7,942,099...7,950,256 JBrowse link
calcium signaling pathway via the calcium-sensing receptor term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb1 arrestin beta 1 ISO RGD PMID:15637145, PMID:22192592 RGD:7207059, RGD:7207060 NCBI chrNW_004936498:4,089,621...4,172,749 JBrowse link
G Arrb2 arrestin beta 2 ISO RGD PMID:15637145, PMID:22192592 RGD:7207059, RGD:7207060 NCBI chrNW_004936677:3,173,054...3,181,475 JBrowse link
G Casr calcium sensing receptor ISO RGD PMID:12239094, PMID:15637145, PMID:22192592 RGD:7207059, RGD:7207060, RGD:7207227 NCBI chrNW_004936536:8,574,064...8,599,446 JBrowse link
G Flna filamin A ISO RGD PMID:12239094 RGD:7207227 NCBI chrNW_004936809:1,097,288...1,123,206 JBrowse link
G Grk2 G protein-coupled receptor kinase 2 ISO RGD PMID:15637145 RGD:7207060 NCBI chrNW_004936599:2,437,061...2,456,141 JBrowse link
G Grk3 G protein-coupled receptor kinase 3 ISO RGD PMID:15637145 RGD:7207060 NCBI chrNW_004936657:425,902...522,331 JBrowse link
G Grk4 G protein-coupled receptor kinase 4 ISO RGD PMID:15637145 RGD:7207060 NCBI chrNW_004936477:20,580,794...20,668,259 JBrowse link
G Rgs12 regulator of G protein signaling 12 ISO RGD PMID:12239094 RGD:7207227 NCBI chrNW_004936477:20,300,528...20,388,212 JBrowse link
G Rgs2 regulator of G protein signaling 2 ISO RGD PMID:12239094 RGD:7207227 NCBI chrNW_004936638:1,065,866...1,068,649 JBrowse link
G Rgs4 regulator of G protein signaling 4 ISO RGD PMID:12239094 RGD:7207227 NCBI chrNW_004937238:101,948...109,513 JBrowse link
G Rgs5 regulator of G protein signaling 5 ISO RGD PMID:21393447 RGD:7207228 NCBI chrNW_004936481:21,421,319...21,483,108 JBrowse link
G Rhoa ras homolog family member A ISO RGD PMID:12239094 RGD:7207227 NCBI chrNW_004936529:1,000,050...1,045,655 JBrowse link
calcium/calcium-mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2a1 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 ISO RGD PMID:19789383 RGD:7204695 NCBI chrNW_004936501:11,818,301...11,836,221 JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 ISO RGD PMID:19789383 RGD:7204695 NCBI chrNW_004936558:3,300,941...3,357,595 JBrowse link
G Atp2a3 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 ISO RGD PMID:19789383 RGD:7204695 NCBI chrNW_004936677:552,066...585,093 JBrowse link
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 ISO RGD PMID:19789383 RGD:7204695 NCBI chrNW_004936507:6,525,302...6,631,003 JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO RGD PMID:19789383 RGD:7204695 NCBI chrNW_004936602:2,744,757...3,011,051 JBrowse link
G Atp2b3 ATPase plasma membrane Ca2+ transporting 3 ISO RGD PMID:19789383 RGD:7204695 NCBI chrNW_004936809:396,883...466,372 JBrowse link
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 ISO RGD PMID:19789383 RGD:7204695 NCBI chrNW_004936567:944,825...1,039,920 JBrowse link
G Atp2c1 ATPase secretory pathway Ca2+ transporting 1 ISO RGD PMID:19789383 RGD:7204695 NCBI chrNW_004936529:4,340,131...4,474,884 JBrowse link
G Atp2c2 ATPase secretory pathway Ca2+ transporting 2 ISO RGD PMID:19789383 RGD:7204695 NCBI chrNW_004936641:3,498,693...3,547,968 JBrowse link
G Cabp1 calcium binding protein 1 ISO RGD PMID:20668007 RGD:7204681 NCBI chrNW_004936668:324,299...339,334 JBrowse link
G Cabp2 calcium binding protein 2 ISO RGD PMID:20668007 RGD:7204681 NCBI chrNW_004936599:2,246,139...2,250,963 JBrowse link
G Cabp4 calcium binding protein 4 ISO RGD PMID:20668007 RGD:7204681 NCBI chrNW_004936599:2,295,124...2,299,558 JBrowse link
G Cacna1a calcium voltage-gated channel subunit alpha1 A ISO RGD PMID:21746798 RGD:7204688 NCBI chrNW_004936659:2,201,606...2,269,625 JBrowse link
G Cacna1b calcium voltage-gated channel subunit alpha1 B ISO RGD PMID:21746798 RGD:7204688 NCBI chrNW_004936669:133,488...308,623 JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C ISO RGD PMID:21746798 RGD:7204688 NCBI chrNW_004936606:2,168,104...2,867,560 JBrowse link
G Cacna1d calcium voltage-gated channel subunit alpha1 D ISO RGD PMID:21746798 RGD:7204688 NCBI chrNW_004936473:4,164,633...4,479,866 JBrowse link
G Cacna1e calcium voltage-gated channel subunit alpha1 E ISO RGD PMID:21746798 RGD:7204688 NCBI chrNW_004936481:7,694,960...7,908,683 JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F ISO RGD PMID:21746798 RGD:7204688 NCBI chrNW_004936721:1,078,570...1,106,153 JBrowse link
G Cacna1g calcium voltage-gated channel subunit alpha1 G ISO RGD PMID:21746798 RGD:7204688 NCBI chrNW_004936490:11,093,600...11,157,756 JBrowse link
G Cacna1h calcium voltage-gated channel subunit alpha1 H ISO RGD PMID:21746798 RGD:7204688 NCBI chrNW_004936694:2,702,224...2,724,574 JBrowse link
G Cacna1i calcium voltage-gated channel subunit alpha1 I ISO RGD PMID:21746798 RGD:7204688 NCBI chrNW_004936492:1,990,430...2,030,744 JBrowse link
G Cacna1s calcium voltage-gated channel subunit alpha1 S ISO RGD PMID:21746798 RGD:7204688 NCBI chrNW_004936567:3,269,283...3,331,858 JBrowse link
G Cacnb1 calcium voltage-gated channel auxiliary subunit beta 1 ISO RGD PMID:21746798 RGD:7204688 NCBI chrNW_004936490:14,448,305...14,468,785 JBrowse link
G Cacnb2 calcium voltage-gated channel auxiliary subunit beta 2 ISO RGD PMID:21746798 RGD:7204688 NCBI chrNW_004936520:8,951,994...9,164,039 JBrowse link
G Cacnb3 calcium voltage-gated channel auxiliary subunit beta 3 ISO RGD PMID:21746798 RGD:7204688 NCBI chrNW_004936512:6,652,836...6,666,171 JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 ISO RGD PMID:21746798 RGD:7204688 NCBI chrNW_004936469:25,494,820...25,745,783 JBrowse link
G Calb1 calbindin 1 ISO RGD PMID:20943758 RGD:7204685 NCBI chrNW_004936544:3,858,344...3,881,985 JBrowse link
G Calb2 calbindin 2 ISO RGD PMID:20943758 RGD:7204685 NCBI chrNW_004936475:22,344,416...22,372,015 JBrowse link
G Calm2 calmodulin 2 ISO RGD PMID:10884684, PMID:18083096 RGD:7204676, RGD:7204677 NCBI chrNW_004936508:5,207,909...5,223,780 JBrowse link
G Calm3 calmodulin 3 ISO RGD PMID:10884684, PMID:18083096 RGD:7204676, RGD:7204677 NCBI chrNW_004936664:471,446...480,858 JBrowse link
G Calr calreticulin ISO RGD PMID:20356453 RGD:7204686 NCBI chrNW_004936659:1,994,695...1,999,070 JBrowse link
G Casq1 calsequestrin 1 ISO RGD PMID:20356453 RGD:7204686 NCBI chrNW_004936740:430,367...442,468 JBrowse link
G Casq2 calsequestrin 2 ISO RGD PMID:20356453 RGD:7204686 NCBI chrNW_004936627:1,001,681...1,069,377 JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 ISO RGD PMID:22435804 RGD:7204690 NCBI chrNW_004936482:14,091,343...14,107,793 JBrowse link
G Cnga2 cyclic nucleotide gated channel subunit alpha 2 ISO RGD PMID:22435804 RGD:7204690 NCBI chrNW_004936714:1,011,736...1,017,722 JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 ISO RGD PMID:22435804 RGD:7204690 NCBI chrNW_004936744:1,499,431...1,537,784 JBrowse link
G Cnga4 cyclic nucleotide gated channel subunit alpha 4 ISO RGD PMID:22435804 RGD:7204690 NCBI chrNW_004936842:310,741...314,754 JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO RGD PMID:22435804 RGD:7204690 NCBI chrNW_004936475:9,844,438...9,908,009 JBrowse link
G Cngb3 cyclic nucleotide gated channel subunit beta 3 ISO RGD PMID:22435804 RGD:7204690 NCBI chrNW_004936544:1,166,896...1,305,339 JBrowse link
G Guca1b guanylate cyclase activator 1B ISO RGD PMID:20668007 RGD:7204681 NCBI chrNW_004936476:17,679,505...17,688,970 JBrowse link
G Guca2b guanylate cyclase activator 2B ISO RGD PMID:20668007 RGD:7204681 NCBI chrNW_004936474:23,632,836...23,634,330 JBrowse link
G Itpr1 inositol 1,4,5-trisphosphate receptor type 1 ISO RGD PMID:19133301 RGD:7204693 NCBI chrNW_004936577:3,896,455...4,198,396 JBrowse link
G Itpr2 inositol 1,4,5-trisphosphate receptor type 2 ISO RGD PMID:19133301 RGD:7204693 NCBI chrNW_004936548:646,019...1,120,426 JBrowse link
G Itpr3 inositol 1,4,5-trisphosphate receptor type 3 ISO RGD PMID:19133301 RGD:7204693 NCBI chrNW_004936476:25,254,937...25,318,316 JBrowse link
G Kcnip1 potassium voltage-gated channel interacting protein 1 ISO RGD PMID:20668007 RGD:7204681 NCBI chrNW_004936609:4,168,487...4,481,161 JBrowse link
G Kcnip2 potassium voltage-gated channel interacting protein 2 ISO RGD PMID:20668007 RGD:7204681 NCBI chrNW_004936600:3,940,806...3,974,455 JBrowse link
G Kcnip3 potassium voltage-gated channel interacting protein 3 ISO RGD PMID:20668007 RGD:7204681 NCBI chrNW_004936744:91,833...167,214 JBrowse link
G Kcnip4 potassium voltage-gated channel interacting protein 4 ISO RGD PMID:20668007 RGD:7204681 NCBI chrNW_004936477:6,967,927...8,024,539 JBrowse link
G Kcnn1 potassium calcium-activated channel subfamily N member 1 ISO RGD PMID:21942705 RGD:7204683 NCBI chrNW_004936596:3,107,631...3,123,433 JBrowse link
G Kcnn2 potassium calcium-activated channel subfamily N member 2 ISO RGD PMID:21942705 RGD:7204683 NCBI chrNW_004937043:133,981...269,593 JBrowse link
G Kcnn3 potassium calcium-activated channel subfamily N member 3 ISO RGD PMID:21942705 RGD:7204683 NCBI chrNW_004936580:4,277,219...4,426,242 JBrowse link
G Kcnn4 potassium calcium-activated channel subfamily N member 4 ISO RGD PMID:21942705 RGD:7204683 NCBI chrNW_004936706:940,585...952,484 JBrowse link
G LOC101967074 calmodulin ISO RGD PMID:10884684, PMID:18083096 RGD:7204676, RGD:7204677 NCBI chrNW_004936488:17,580,425...17,588,480 JBrowse link
G Mcoln1 mucolipin 1 ISO RGD PMID:20716668 RGD:7204689 NCBI chrNW_004936588:4,600,344...4,608,793 JBrowse link
G Mcu mitochondrial calcium uniporter ISO RGD PMID:22850819 RGD:7204696 NCBI chrNW_004936521:6,129,392...6,191,035 JBrowse link
G Ocm oncomodulin ISO RGD PMID:20943758 RGD:7204685 NCBI chrNW_004936750:556,912...561,291 JBrowse link
G Orai1 ORAI calcium release-activated calcium modulator 1 ISO RGD PMID:22914293 RGD:7204692 NCBI chrNW_004936558:2,730,098...2,743,062 JBrowse link
G Orai2 ORAI calcium release-activated calcium modulator 2 ISO RGD PMID:22914293 RGD:7204692 NCBI chrNW_004936543:1,867,148...1,880,289 JBrowse link
G Orai3 ORAI calcium release-activated calcium modulator 3 ISO RGD PMID:22914293 RGD:7204692 NCBI chrNW_004936501:13,332,859...13,338,838 JBrowse link
G Pvalb parvalbumin ISO RGD PMID:20943758 RGD:7204685 NCBI chrNW_004936492:4,048,459...4,064,024 JBrowse link
G Rcvrn recoverin ISO RGD PMID:20668007 RGD:7204681 NCBI chrNW_004936595:2,873,739...2,882,150 JBrowse link
G Ryr1 ryanodine receptor 1 ISO RGD PMID:20961976 RGD:7204694 NCBI chrNW_004936801:1,185,615...1,298,416 JBrowse link
G Ryr2 ryanodine receptor 2 ISO RGD PMID:20961976 RGD:7204694 NCBI chrNW_004936484:15,402,488...15,825,410 JBrowse link
G Ryr3 ryanodine receptor 3 ISO RGD PMID:20961976 RGD:7204694 NCBI chrNW_004936673:2,078,095...2,434,872 JBrowse link
G S100a1 S100 calcium binding protein A1 ISO RGD PMID:16129693, PMID:17964289 RGD:1579960, RGD:7204682 NCBI chrNW_004936580:3,429,697...3,433,567 JBrowse link
G S100a4 S100 calcium binding protein A4 ISO RGD PMID:17964289 RGD:7204682 NCBI chrNW_004936580:3,355,751...3,358,030 JBrowse link
G S100g S100 calcium binding protein G ISO RGD PMID:20943758 RGD:7204685 NCBI chrNW_004936470:5,931,158...5,934,986 JBrowse link
G Slc24a1 solute carrier family 24 member 1 ISO RGD PMID:17716241 RGD:7204698 NCBI chrNW_004936471:25,872,854...25,909,102 JBrowse link
G Slc24a2 solute carrier family 24 member 2 ISO RGD PMID:17716241 RGD:7204698 NCBI chrNW_004936652:1,375,292...1,585,718 JBrowse link
G Slc24a3 solute carrier family 24 member 3 ISO RGD PMID:17716241 RGD:7204698 NCBI chrNW_004936485:637,715...1,085,860 JBrowse link
G Slc24a4 solute carrier family 24 member 4 ISO RGD PMID:17716241 RGD:7204698 NCBI chrNW_004936733:515,546...639,699 JBrowse link
G Slc24a5 solute carrier family 24 member 5 ISO RGD PMID:17716241 RGD:7204698 NCBI chrNW_004936471:10,470,078...10,492,334 JBrowse link
G Slc8a1 solute carrier family 8 member A1 ISO RGD PMID:17716241 RGD:7204698 NCBI chrNW_004936508:10,894,918...11,256,084 JBrowse link
G Slc8a2 solute carrier family 8 member A2 ISO RGD PMID:17716241 RGD:7204698 NCBI chrNW_004936664:1,116,543...1,139,586 JBrowse link
G Slc8a3 solute carrier family 8 member A3 ISO RGD PMID:17716241 RGD:7204698 NCBI chrNW_004936495:13,236,480...13,370,973 JBrowse link
G Slc8b1 solute carrier family 8 member B1 ISO RGD PMID:22850819 RGD:7204696 NCBI chrNW_004936668:3,160,148...3,181,814 JBrowse link
G Stim1 stromal interaction molecule 1 ISO RGD PMID:22914293 RGD:7204692 NCBI chrNW_004936498:849,775...1,063,552 JBrowse link
G Stim2 stromal interaction molecule 2 ISO RGD PMID:22914293 RGD:7204692 NCBI chrNW_004936477:2,824,720...2,950,069 JBrowse link
G Syt1 synaptotagmin 1 ISO RGD PMID:11751925, PMID:15534041 RGD:2311146, RGD:7204679 NCBI chrNW_004936698:65,210...575,538 JBrowse link
G Syt7 synaptotagmin 7 ISO RGD PMID:15534041, PMID:18713958 RGD:2311148, RGD:7204679 NCBI chrNW_004936581:1,516,199...1,557,992 JBrowse link
G Syt9 synaptotagmin 9 ISO RGD PMID:11751925, PMID:18713958 RGD:2311146, RGD:2311148 NCBI chrNW_004936841:542,211...706,272 JBrowse link
G Tnnc1 troponin C1, slow skeletal and cardiac type ISO RGD PMID:17964289 RGD:7204682 NCBI chrNW_004936473:3,290,961...3,293,920 JBrowse link
G Tnnc2 troponin C2, fast skeletal type ISO RGD PMID:17964289 RGD:7204682 NCBI chrNW_004936514:7,196,576...7,199,603 JBrowse link
G Tpcn1 two pore segment channel 1 ISO RGD PMID:20018950 RGD:7204697 NCBI chrNW_004936668:3,111,038...3,162,163 JBrowse link
G Tpcn2 two pore segment channel 2 ISO RGD PMID:20018950 RGD:7204697 NCBI chrNW_004936599:1,301,937...1,343,046 JBrowse link
G Trpv5 transient receptor potential cation channel subfamily V member 5 ISO RGD PMID:20716668 RGD:7204689 NCBI chrNW_004936527:375,922...399,446 JBrowse link
G Trpv6 transient receptor potential cation channel subfamily V member 6 ISO RGD PMID:20716668 RGD:7204689 NCBI chrNW_004936527:345,237...359,877 JBrowse link
calcium/calmodulin dependent kinase 2 signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1c calcium voltage-gated channel subunit alpha1 C ISO RGD PMID:23091085 RGD:7240708 NCBI chrNW_004936606:2,168,104...2,867,560 JBrowse link
G Cacnb2 calcium voltage-gated channel auxiliary subunit beta 2 ISO RGD PMID:23091085 RGD:7240708 NCBI chrNW_004936520:8,951,994...9,164,039 JBrowse link
G Cacng2 calcium voltage-gated channel auxiliary subunit gamma 2 ISO RGD PMID:22334212 RGD:7240704 NCBI chrNW_004936492:4,125,182...4,232,239 JBrowse link
G Calm2 calmodulin 2 ISO RGD PMID:22717267, PMID:23091085 RGD:7240705, RGD:7240708 NCBI chrNW_004936508:5,207,909...5,223,780 JBrowse link
G Calm3 calmodulin 3 ISO RGD PMID:22717267, PMID:23091085 RGD:7240705, RGD:7240708 NCBI chrNW_004936664:471,446...480,858 JBrowse link
G Camk2a calcium/calmodulin dependent protein kinase II alpha ISO RGD PMID:22334212, PMID:22717267 RGD:7240704, RGD:7240705 NCBI chrNW_004936504:4,636,863...4,700,887 JBrowse link
G Camk2b calcium/calmodulin dependent protein kinase II beta ISO RGD PMID:22334212, PMID:22717267 RGD:7240704, RGD:7240705 NCBI chrNW_004936478:19,183,493...19,278,457 JBrowse link
G Camk2d calcium/calmodulin dependent protein kinase II delta ISO RGD PMID:22717267, PMID:23091085 RGD:7240705, RGD:7240708 NCBI chrNW_004936563:4,226,412...4,526,139 JBrowse link
G Camk2g calcium/calmodulin dependent protein kinase II gamma ISO RGD PMID:22717267 RGD:7240705 NCBI chrNW_004936521:5,276,629...5,325,907 JBrowse link
G Camk2n1 calcium/calmodulin dependent protein kinase II inhibitor 1 ISO RGD PMID:21070840, PMID:21301225 RGD:7240706, RGD:7240707 NCBI chrNW_004936474:6,463,691...6,466,641 JBrowse link
G Camk2n2 calcium/calmodulin dependent protein kinase II inhibitor 2 ISO RGD PMID:21070840, PMID:21301225 RGD:7240706, RGD:7240707 NCBI chrNW_004936578:5,606,507...5,607,850 JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 ISO RGD PMID:22717267 RGD:7240705 NCBI chrNW_004936833:551,989...843,064 JBrowse link
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 ISO RGD PMID:22334212 RGD:7240704 NCBI chrNW_004936515:8,937,391...9,236,438 JBrowse link
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 ISO RGD PMID:22717267 RGD:7240705 NCBI chrNW_004936669:814,330...838,881 JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A ISO RGD PMID:22717267 RGD:7240705 NCBI chrNW_004936530:8,286,101...8,612,183 JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B ISO RGD PMID:22334212, PMID:22717267 RGD:7240704, RGD:7240705 NCBI chrNW_004936587:3,406,055...3,806,956 JBrowse link
G Hdac4 histone deacetylase 4 ISO RGD PMID:21255680 RGD:7241019 NCBI chrNW_004936745:1,730,743...1,942,071 JBrowse link
G Hdac5 histone deacetylase 5 ISO RGD PMID:21255680 RGD:7241019 NCBI chrNW_004936541:561,721...598,915 JBrowse link
G LOC101967074 calmodulin ISO RGD PMID:22717267, PMID:23091085 RGD:7240705, RGD:7240708 NCBI chrNW_004936488:17,580,425...17,588,480 JBrowse link
G Lrrc7 leucine rich repeat containing 7 ISO RGD PMID:22717267 RGD:7240705 NCBI chrNW_004936591:1,905,434...2,417,053 JBrowse link
G Pln phospholamban ISO RGD PMID:23091085 RGD:7240708 NCBI chrNW_004936658:1,443,626...1,453,770 JBrowse link
G Ppm1e protein phosphatase, Mg2+/Mn2+ dependent 1E ISO RGD PMID:18454172 RGD:7241020 NCBI chrNW_004936490:4,285,770...4,428,213 JBrowse link
G Ppm1f protein phosphatase, Mg2+/Mn2+ dependent 1F ISO RGD PMID:18454172 RGD:7241020 NCBI chrNW_004936619:1,786,223...1,816,083 JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma ISO RGD PMID:18454172 RGD:7241020 NCBI chrNW_004936558:3,631,794...3,651,754 JBrowse link
G Ppp2ca protein phosphatase 2 catalytic subunit alpha ISO RGD PMID:18454172 RGD:7241020 NCBI chrNW_004936647:1,031,118...1,055,961 JBrowse link
G Ryr2 ryanodine receptor 2 ISO RGD PMID:23091085 RGD:7240708 NCBI chrNW_004936484:15,402,488...15,825,410 JBrowse link
G Scn5a sodium voltage-gated channel alpha subunit 5 ISO RGD PMID:23091085 RGD:7240708 NCBI chrNW_004936473:27,883,526...27,963,994 JBrowse link
G Syngap1 synaptic Ras GTPase activating protein 1 ISO RGD PMID:22717267 RGD:7240705 NCBI chrNW_004936476:25,446,524...25,474,793 JBrowse link
calcium/calmodulin dependent kinase signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B ISO RGD PMID:15245872 RGD:1581866 NCBI chrNW_004936511:3,446,864...3,478,434 JBrowse link
ceramide signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aifm1 apoptosis inducing factor mitochondria associated 1 ISO PID PID:200119 NCBI chrNW_004936479:1,441,508...1,477,133 JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO PID PID:200119 NCBI chrNW_004936621:620,163...639,115 JBrowse link
G Asah1 N-acylsphingosine amidohydrolase 1 ISO PID PID:200119 NCBI chrNW_004936554:104,666...141,761 JBrowse link
G Bad BCL2 associated agonist of cell death ISO PID PID:200119