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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:small middle ear ossicles
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Accession:MP:0030123 term browser browse the term
Definition:reduced size of the three bones of the middle ear
Synonyms:exact_synonym: small middle ear bones


show annotations for term's descendants           Sort by:
small middle ear ossicles term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf6 growth differentiation factor 6 IAGP MGI PMID:12606286 NCBI chr 4:9,844,372...9,862,345
Ensembl chr 4:9,844,372...9,862,345 		JBrowse link
G Hoxa1 homeobox A1 IAGP MGI PMID:10529419 NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297 		JBrowse link
G Hoxa2 homeobox A2 IAGP MGI PMID:10529419 NCBI chr 6:52,139,389...52,141,808
Ensembl chr 6:52,139,397...52,141,811 		JBrowse link
G Scube3 signal peptide, CUB domain, EGF-like 3 IAGP MGI PMID:27815347 NCBI chr17:28,361,074...28,393,825
Ensembl chr17:28,361,115...28,393,828 		JBrowse link
gonial bone hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E2f1 E2F transcription factor 1 IAGP MGI PMID:25725491 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Foxc2 forkhead box C2 IAGP MGI PMID:9409679 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Gas1 growth arrest specific 1 IAGP MGI PMID:17525797 NCBI chr13:60,322,219...60,325,179
Ensembl chr13:60,322,219...60,325,179 		JBrowse link
G Nkx3-2 NK3 homeobox 2 IAGP MGI PMID:14973294 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844 		JBrowse link
G Sdccag33 serologically defined colon cancer antigen 33 IAGP MGI PMID:17586487 NCBI chr18:84,029,752...84,105,833
Ensembl chr18:84,029,752...84,105,831 		JBrowse link
incus hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:26341559 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Gna11 guanine nucleotide binding protein, alpha 11 IAGP MGI PMID:9687499 NCBI chr10:81,364,558...81,380,996
Ensembl chr10:81,364,558...81,381,024 		JBrowse link
G Gnaq guanine nucleotide binding protein, alpha q polypeptide IAGP MGI PMID:9687499 NCBI chr19:16,110,048...16,365,884
Ensembl chr19:16,110,195...16,364,827 		JBrowse link
malleus hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E2f1 E2F transcription factor 1 IAGP MGI PMID:25725491 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:26341559 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Foxc2 forkhead box C2 IAGP MGI PMID:9409679 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Gna11 guanine nucleotide binding protein, alpha 11 IAGP MGI PMID:9687499 NCBI chr10:81,364,558...81,380,996
Ensembl chr10:81,364,558...81,381,024 		JBrowse link
G Gnaq guanine nucleotide binding protein, alpha q polypeptide IAGP MGI PMID:9687499 NCBI chr19:16,110,048...16,365,884
Ensembl chr19:16,110,195...16,364,827 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:15652707 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
middle ear ossicle hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E2f1 E2F transcription factor 1 IAGP MGI PMID:25053435 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:26341559 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 IAGP MGI PMID:15996652 NCBI chr 1:89,855,684...89,858,898
Ensembl chr 1:89,855,678...89,858,901 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 IAGP MGI PMID:25053435 NCBI chr11:57,719,539...57,722,973
Ensembl chr11:57,719,531...57,723,644 		JBrowse link
G Hapln1 hyaluronan and proteoglycan link protein 1 IAGP MGI PMID:9988279 NCBI chr13:89,688,654...89,759,951
Ensembl chr13:89,687,915...89,759,771 		JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 IAGP MGI PMID:10888597 NCBI chr18:60,946,827...60,982,055
Ensembl chr18:60,946,827...60,982,043 		JBrowse link
short malleus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kl klotho IAGP MGI PMID:25860694 NCBI chr 5:150,876,072...150,917,282
Ensembl chr 5:150,876,072...150,917,282 		JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:7914451 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927 		JBrowse link
small gonial bone term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:12514106 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:12514106 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
small incus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf6 growth differentiation factor 6 IAGP MGI PMID:12606286 NCBI chr 4:9,844,372...9,862,345
Ensembl chr 4:9,844,372...9,862,345 		JBrowse link
G Hoxa1 homeobox A1 IAGP MGI PMID:10529420 NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297 		JBrowse link
G Hoxb1 homeobox B1 IAGP MGI PMID:10529420 NCBI chr11:96,256,547...96,259,082
Ensembl chr11:96,256,578...96,259,082 		JBrowse link
G Scube3 signal peptide, CUB domain, EGF-like 3 IAGP MGI PMID:27815347 NCBI chr17:28,361,074...28,393,825
Ensembl chr17:28,361,115...28,393,828 		JBrowse link
small malleus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf6 growth differentiation factor 6 IAGP MGI PMID:12606286 NCBI chr 4:9,844,372...9,862,345
Ensembl chr 4:9,844,372...9,862,345 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:17523175 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:17523175 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Hoxa1 homeobox A1 IAGP MGI PMID:10529420 PMID:15367676 NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297 		JBrowse link
G Hoxb1 homeobox B1 IAGP MGI PMID:10529420 NCBI chr11:96,256,547...96,259,082
Ensembl chr11:96,256,578...96,259,082 		JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:12701100 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927 		JBrowse link
G Msx2 msh homeobox 2 IAGP MGI PMID:12701100 NCBI chr13:53,620,917...53,626,816
Ensembl chr13:53,620,920...53,627,110 		JBrowse link
small stapes term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 IAGP MGI PMID:29615807 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659 		JBrowse link
G Dlx1 distal-less homeobox 1 IAGP MGI PMID:9187081 NCBI chr 2:71,358,457...71,364,325
Ensembl chr 2:71,358,457...71,364,325 		JBrowse link
G Dlx2 distal-less homeobox 2 IAGP MGI PMID:9187081 NCBI chr 2:71,373,752...71,377,095
Ensembl chr 2:71,373,752...71,377,098 		JBrowse link
G Gdf6 growth differentiation factor 6 IAGP MGI PMID:12606286 NCBI chr 4:9,844,372...9,862,345
Ensembl chr 4:9,844,372...9,862,345 		JBrowse link
stapes hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:26341559 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Gna11 guanine nucleotide binding protein, alpha 11 IAGP MGI PMID:9687499 NCBI chr10:81,364,558...81,380,996
Ensembl chr10:81,364,558...81,381,024 		JBrowse link
G Gnaq guanine nucleotide binding protein, alpha q polypeptide IAGP MGI PMID:9687499 NCBI chr19:16,110,048...16,365,884
Ensembl chr19:16,110,195...16,364,827 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16954
    hearing/vestibular/ear phenotype 1026
      abnormal ear morphology 570
        abnormal middle ear morphology 131
          abnormal middle ear ossicle morphology 79
            small middle ear ossicles 26
              middle ear ossicle hypoplasia + 13
              small gonial bone + 7
              small incus + 7
              small malleus + 14
              small stapes + 7
Path 2
Term Annotations click to browse term
  mammalian phenotype 16954
    skeleton phenotype 3369
      abnormal skeleton morphology 3176
        abnormal axial skeleton morphology 1783
          abnormal craniofacial bone morphology 1037
            abnormal middle ear ossicle morphology 79
              small middle ear ossicles 26
                middle ear ossicle hypoplasia + 13
                small gonial bone + 7
                small incus + 7
                small malleus + 14
                small stapes + 7
paths to the root