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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.

Term:abnormal neck morphology
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Accession:MP:0012719 term browser browse the term
Definition:any structural anomaly of the part of body by which the head is connected to the trunk extending from the base of the cranium to the top of the shoulders



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abnormal neck morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cilk1 ciliogenesis associated kinase 1 IAGP MGI PMID:29098359 NCBI chr 9:78,016,425...78,079,396
Ensembl chr 9:78,016,474...78,079,389
JBrowse link
abnormal laryngeal muscle morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2ird1 general transcription factor II I repeat domain-containing 1 IAGP MGI PMID:22198572 NCBI chr 5:134,386,515...134,485,628
Ensembl chr 5:134,386,510...134,485,570
JBrowse link
G Myog myogenin IAGP MGI PMID:10696067 NCBI chr 1:134,217,742...134,220,286
Ensembl chr 1:134,217,727...134,220,286
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:15385444 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
abnormal nuchal region morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap13 A kinase (PRKA) anchor protein 13 IAGP MGI PMID:20139090 NCBI chr 7:75,105,271...75,404,357
Ensembl chr 7:75,105,282...75,404,357
JBrowse link
abnormal scalene muscle morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmd dystrophin, muscular dystrophy IAGP MGI PMID:1865908 NCBI chr  X:81,858,244...84,248,656
Ensembl chr  X:81,992,476...84,249,747
JBrowse link
elongated neck term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift122 intraflagellar transport 122 IAGP MGI PMID:19000668 NCBI chr 6:115,830,340...115,903,660
Ensembl chr 6:115,830,431...115,903,660
JBrowse link
G Mbd4 methyl-CpG binding domain protein 4 IAGP MGI PMID:19000668 NCBI chr 6:115,817,658...115,830,361
Ensembl chr 6:115,817,658...115,830,332
JBrowse link
nuchal edema term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 IAGP MGI PMID:25190801 NCBI chr 4:148,888,823...149,039,350
Ensembl chr 4:148,888,886...149,039,346
JBrowse link
G Cdk13 cyclin-dependent kinase 13 IAGP MGI PMID:31440507 NCBI chr13:17,885,309...17,979,960
Ensembl chr13:17,884,900...17,979,682
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 IAGP MGI PMID:19017799 NCBI chr16:16,801,246...16,865,317
Ensembl chr16:16,801,246...16,865,317
JBrowse link
G Mapk3 mitogen-activated protein kinase 3 IAGP MGI PMID:19017799 NCBI chr 7:126,358,798...126,364,988
Ensembl chr 7:126,358,773...126,364,991
JBrowse link
G Mymx myomixer, myoblast fusion factor IAGP MGI PMID:28569755 NCBI chr17:45,911,887...45,913,122
Ensembl chr17:45,911,897...45,913,028
JBrowse link
G Nprl3 nitrogen permease regulator-like 3 IAGP MGI PMID:22538705 NCBI chr11:32,181,963...32,217,707
Ensembl chr11:32,175,628...32,217,707
JBrowse link
G Svep1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 IAGP MGI PMID:28179432 NCBI chr 4:58,042,796...58,206,596
Ensembl chr 4:58,042,442...58,206,859
JBrowse link
short neck term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cilk1 ciliogenesis associated kinase 1 IAGP MGI PMID:29098359 NCBI chr 9:78,016,425...78,079,396
Ensembl chr 9:78,016,474...78,079,389
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242110 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
webbed neck term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:19706403 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 15939
    growth/size/body region phenotype 6583
      abnormal neck morphology 16
        abnormal neck muscle morphology + 4
        abnormal neck skin morphology + 1
        abnormal nuchal region morphology + 8
        absent neck 0
        elongated neck 2
        greasy head/neck 0
        short neck 2
paths to the root