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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.

Term:abnormal agouti pigmentation
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Accession:MP:0012076 term browser browse the term
Definition:amount and distribution of yellow pigment (phaeomelanin) relative to black or brown pigment (eumelanin) is variably increased or decreased compared with a wild-type agouti pattern resulting in a range of coat color from yellow to almost black
Comment:This term is rodent specific.



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abnormal agouti pigmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pepd peptidase D IAGP MGI PMID:21472842 NCBI chr 7:34,611,832...34,744,131
Ensembl chr 7:34,611,804...34,744,133
JBrowse link
darkened coat color term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G a nonagouti IAGP MGI PMID:1896452 PMID:2320577 PMID:5962396 PMID:5968639 PMID:7751596 More... NCBI chr 2:154,792,519...154,892,932
Ensembl chr 2:154,633,322...154,892,932
JBrowse link
G Atrn attractin IAGP MGI PMID:11431694 PMID:11444801 PMID:12560552 PMID:18064672 PMID:18821597 NCBI chr 2:130,734,363...130,872,249
Ensembl chr 2:130,748,415...130,872,253
JBrowse link
G Cbl Casitas B-lineage lymphoma IAGP MGI PMID:16211006 NCBI chr 9:44,054,273...44,145,556
Ensembl chr 9:44,054,273...44,145,346
JBrowse link
G Cux1 cut-like homeobox 1 IAGP MGI PMID:9698457 NCBI chr 5:136,276,989...136,596,429
Ensembl chr 5:136,276,989...136,596,344
JBrowse link
G Drd2 dopamine receptor D2 IAGP MGI PMID:9140068 NCBI chr 9:49,251,703...49,319,468
Ensembl chr 9:49,251,927...49,319,477
JBrowse link
G Edar ectodysplasin-A receptor IAGP MGI PMID:892445 NCBI chr10:58,436,602...58,511,518
Ensembl chr10:58,436,611...58,511,476
JBrowse link
G Fmn1 formin 1 IAGP MGI PMID:2320577 NCBI chr 2:113,158,029...113,547,113
Ensembl chr 2:113,158,081...113,547,112
JBrowse link
G Gna11 guanine nucleotide binding protein, alpha 11 IAGP MGI PMID:12533510 NCBI chr10:81,364,558...81,380,996
Ensembl chr10:81,364,558...81,381,024
JBrowse link
G Gnaq guanine nucleotide binding protein, alpha q polypeptide IAGP MGI PMID:12533510 PMID:26763459 NCBI chr19:16,110,048...16,365,884
Ensembl chr19:16,110,195...16,364,827
JBrowse link
G Hephl1 hephaestin-like 1 IAGP MGI PMID:5911159 NCBI chr 9:14,963,137...15,023,466
Ensembl chr 9:14,963,137...15,023,404
JBrowse link
G Krt14 keratin 14 IAGP MGI PMID:17635993 NCBI chr11:100,093,988...100,098,336
Ensembl chr11:100,093,988...100,098,374
JBrowse link
G Macroh2a1 macroH2A.1 histone IAGP MGI PMID:25312643 NCBI chr13:56,221,435...56,283,439
Ensembl chr13:56,221,432...56,284,174
JBrowse link
G Macroh2a2 macroH2A.2 histone IAGP MGI PMID:25312643 NCBI chr10:61,574,419...61,620,383
Ensembl chr10:61,574,444...61,619,926
JBrowse link
G Mc1r melanocortin 1 receptor IEA MGI NCBI chr 8:124,133,839...124,137,483
Ensembl chr 8:124,133,846...124,137,483
JBrowse link
G Mgrn1 mahogunin, ring finger 1 IAGP MGI PMID:12560552 NCBI chr16:4,703,964...4,756,160
Ensembl chr16:4,704,113...4,756,160
JBrowse link
G Mitf melanogenesis associated transcription factor IAGP MGI PMID:22367038 NCBI chr 6:97,783,966...97,998,321
Ensembl chr 6:97,784,013...97,998,310
JBrowse link
G Oca2 oculocutaneous albinism II IEA MGI NCBI chr 7:55,889,341...56,186,266
Ensembl chr 7:55,889,508...56,186,266
JBrowse link
G Pepd peptidase D IAGP MGI PMID:18821597 PMID:21472842 NCBI chr 7:34,611,832...34,744,131
Ensembl chr 7:34,611,804...34,744,133
JBrowse link
G Rps6 ribosomal protein S6 IAGP MGI PMID:18641651 NCBI chr 4:86,772,336...86,775,604
Ensembl chr 4:86,772,897...86,775,649
JBrowse link
G Sik2 salt inducible kinase 2 IAGP MGI PMID:20819186 NCBI chr 9:50,800,944...50,920,432
Ensembl chr 9:50,804,101...50,920,373
JBrowse link
G Sox10 SRY (sex determining region Y)-box 10 IAGP MGI PMID:3855546 NCBI chr15:79,039,113...79,048,690
Ensembl chr15:79,039,108...79,049,440
JBrowse link
G Sox18 SRY (sex determining region Y)-box 18 IAGP MGI PMID:11094083 PMID:12533510 NCBI chr 2:181,311,630...181,313,433
Ensembl chr 2:181,311,629...181,313,433
JBrowse link
G Tmem79 transmembrane protein 79 IEA MGI NCBI chr 3:88,236,351...88,241,761
Ensembl chr 3:88,235,962...88,243,455
JBrowse link
G Trp53 transformation related protein 53 IAGP MGI PMID:12432262 PMID:18641651 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699
JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 IAGP MGI PMID:17635993 NCBI chr 4:141,171,984...141,195,248
Ensembl chr 4:141,171,965...141,195,241
JBrowse link
yellow coat color term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G a nonagouti IAGP MGI PMID:5798139 PMID:7751596 PMID:7926745 PMID:15890782 PMID:17652101 More... NCBI chr 2:154,792,519...154,892,932
Ensembl chr 2:154,633,322...154,892,932
JBrowse link
G Ace2 angiotensin converting enzyme 2 IEA MGI NCBI chr  X:162,922,338...162,971,414
Ensembl chr  X:162,922,328...162,971,416
JBrowse link
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif 20 IAGP MGI PMID:5713933 NCBI chr15:94,166,177...94,329,966
Ensembl chr15:94,168,044...94,363,299
JBrowse link
G Dnmt1 DNA methyltransferase 1 IAGP MGI PMID:15890782 NCBI chr 9:20,818,501...20,871,084
Ensembl chr 9:20,818,505...20,871,184
JBrowse link
G Eda ectodysplasin-A IAGP MGI PMID:14506134 NCBI chr  X:99,019,212...99,444,366
Ensembl chr  X:99,019,212...99,444,368
JBrowse link
G Ednrb endothelin receptor type B IAGP MGI PMID:5713933 NCBI chr14:104,052,055...104,081,764
Ensembl chr14:104,052,061...104,081,838
JBrowse link
G Elovl3 ELOVL fatty acid elongase 3 IEA MGI NCBI chr19:46,120,336...46,124,133
Ensembl chr19:46,120,336...46,124,133
JBrowse link
G Mc1r melanocortin 1 receptor IAGP MGI PMID:767180 PMID:5713933 PMID:10374067 PMID:15653560 PMID:17652101 More... NCBI chr 8:124,133,839...124,137,483
Ensembl chr 8:124,133,846...124,137,483
JBrowse link
G Mitf melanogenesis associated transcription factor IEA MGI NCBI chr 6:97,783,966...97,998,321
Ensembl chr 6:97,784,013...97,998,310
JBrowse link
G Oca2 oculocutaneous albinism II IAGP MGI PMID:8575552 NCBI chr 7:55,889,341...56,186,266
Ensembl chr 7:55,889,508...56,186,266
JBrowse link
G Pepd peptidase D IAGP MGI PMID:18821597 NCBI chr 7:34,611,832...34,744,131
Ensembl chr 7:34,611,804...34,744,133
JBrowse link
G Pomc pro-opiomelanocortin-alpha IAGP MGI PMID:10470087 PMID:17652101 NCBI chr12:4,004,945...4,010,643
Ensembl chr12:4,004,951...4,010,642
JBrowse link
G Prkar2b protein kinase, cAMP dependent regulatory, type II beta IAGP MGI PMID:18172198 NCBI chr12:32,008,468...32,111,639
Ensembl chr12:32,008,475...32,111,295
JBrowse link
G Smchd1 SMC hinge domain containing 1 IAGP MGI PMID:15890782 NCBI chr17:71,651,484...71,782,361
Ensembl chr17:71,651,484...71,782,338
JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 IAGP MGI PMID:12036291 PMID:15846349 NCBI chr 3:34,704,144...34,706,610
Ensembl chr 3:34,704,554...34,706,610
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase IEA MGI NCBI chr 3:81,865,719...81,883,035
Ensembl chr 3:81,864,397...81,883,509
JBrowse link
G Tyr tyrosinase IEA MGI NCBI chr 7:87,073,979...87,142,637
Ensembl chr 7:87,073,979...87,142,720
JBrowse link
G Tyrp1 tyrosinase-related protein 1 IEA MGI NCBI chr 4:80,752,360...80,769,973
Ensembl chr 4:80,752,360...80,769,956
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16931
    pigmentation phenotype 729
      abnormal coat/hair pigmentation 471
        abnormal agouti pigmentation 41
          darkened coat color 28
          yellow coat color 18
Path 2
Term Annotations click to browse term
  mammalian phenotype 16931
    integument phenotype 2829
      abnormal skin adnexa morphology 1633
        abnormal coat/ hair morphology 1024
          abnormal coat appearance 939
            abnormal coat/hair pigmentation 471
              abnormal agouti pigmentation 41
                darkened coat color 28
                yellow coat color 18
paths to the root