Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal alveolar lamellar body morphology
go back to main search page
Accession:MP:0010813 term browser browse the term
Definition:any structural anomaly of the specialized secretory organelles found in the cytoplasm of type II pneumocytes and involved in the synthesis, secretion, and reutilization of pulmonary surfactant


show annotations for term's descendants           Sort by:
enlarged alveolar lamellar bodies term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine-rich repeat kinase 2 IMP RGD PMID:24465451 RGD:13462051 NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Lrrk2em1Sage leucine-rich repeat kinase 2; zinc finger nuclease induced mutant 1, Sigma Advanced Genetic Engineering Labs IMP RGD PMID:24465451 RGD:13462051
G Rab38 RAB38, member RAS oncogene family IMP RGD PMID:28438206 RGD:13524861 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924 		JBrowse link
G Rab38ru Rab38, member of RAS oncogene family, ruby allele IMP RGD PMID:28438206 RGD:13524861
increased alveolar lamellar body number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine-rich repeat kinase 2 IMP RGD PMID:24244710 RGD:12880447 NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Lrrk2em1Sage leucine-rich repeat kinase 2; zinc finger nuclease induced mutant 1, Sigma Advanced Genetic Engineering Labs IMP RGD PMID:24244710 RGD:12880447
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 5417
    respiratory system phenotype 47
      abnormal respiratory system morphology 33
        abnormal lung morphology 26
          abnormal lung epithelium morphology 6
            abnormal pulmonary alveolus epithelium morphology 6
              abnormal pulmonary alveolus epithelial cell morphology 6
                abnormal type II pneumocyte morphology 6
                  abnormal alveolar lamellar body morphology 6
                    absent alveolar lamellar bodies 0
                    decreased alveolar lamellar body number 0
                    enlarged alveolar lamellar bodies 6
                    increased alveolar lamellar body number 3
                    small alveolar lamellar bodies 0
Path 2
Term Annotations click to browse term
  mammalian phenotype 5417
    respiratory system phenotype 47
      abnormal respiratory system morphology 33
        abnormal lung morphology 26
          abnormal pulmonary alveolar system morphology 7
            abnormal pulmonary acinus morphology 7
              abnormal pulmonary alveolus morphology 7
                abnormal pulmonary alveolus epithelium morphology 6
                  abnormal pulmonary alveolus epithelial cell morphology 6
                    abnormal type II pneumocyte morphology 6
                      abnormal alveolar lamellar body morphology 6
                        absent alveolar lamellar bodies 0
                        decreased alveolar lamellar body number 0
                        enlarged alveolar lamellar bodies 6
                        increased alveolar lamellar body number 3
                        small alveolar lamellar bodies 0
paths to the root