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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal palatal shelf elevation
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Accession:MP:0009885 term browser browse the term
Definition:any anomaly in the process in which the palatal shelves move from a vertical position in the orofacial cavity to a horizontal apposition above the developing tongue


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abnormal palatal shelf elevation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 IAGP MGI PMID:15037318 NCBI chr 2:58,336,450...58,456,840
Ensembl chr 2:58,278,656...58,457,169 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 IAGP MGI PMID:11238884 NCBI chr16:31,482,261...31,692,174
Ensembl chr16:31,482,261...31,693,947 		JBrowse link
G E2f1 E2F transcription factor 1 IAGP MGI PMID:25759071 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Gli2 GLI-Kruppel family member GLI2 IAGP MGI PMID:9006072 NCBI chr 1:118,761,791...118,987,578
Ensembl chr 1:118,761,862...118,981,349 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:31300413 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:15037318 PMID:24433583 PMID:32169905 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IAGP MGI PMID:19341725 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668 		JBrowse link
G Hhat hedgehog acyltransferase IAGP MGI PMID:23055936 NCBI chr 1:192,195,133...192,453,546
Ensembl chr 1:192,179,019...192,453,531 		JBrowse link
G Ldb1 LIM domain binding 1 IAGP MGI PMID:24433583 NCBI chr19:46,019,963...46,036,584
Ensembl chr19:46,020,009...46,033,653 		JBrowse link
G Meis2 Meis homeobox 2 IAGP MGI PMID:32169905 NCBI chr 2:115,691,745...115,897,925
Ensembl chr 2:115,693,545...115,896,320 		JBrowse link
G Msc musculin IAGP MGI PMID:12493912 NCBI chr 1:14,823,570...14,826,216
Ensembl chr 1:14,823,570...14,826,216 		JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:9732271 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607 		JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic IAGP MGI PMID:19465597 NCBI chr17:83,522,708...83,532,496
Ensembl chr17:83,522,721...83,532,499 		JBrowse link
G Prdm16 PR domain containing 16 IAGP MGI PMID:20007998 NCBI chr 4:154,400,579...154,721,851
Ensembl chr 4:154,400,582...154,721,330 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:31300413 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
G Sp8 trans-acting transcription factor 8 IAGP MGI PMID:23872235 NCBI chr12:118,809,968...118,816,313
Ensembl chr12:118,810,064...118,816,311 		JBrowse link
G Tcf21 transcription factor 21 IAGP MGI PMID:12493912 NCBI chr10:22,693,162...22,696,042
Ensembl chr10:22,693,180...22,696,073 		JBrowse link
G Tmem107 transmembrane protein 107 IAGP MGI PMID:28954202 NCBI chr11:68,961,635...68,964,119
Ensembl chr11:68,961,632...68,964,119 		JBrowse link
G Vegfa vascular endothelial growth factor A IAGP MGI PMID:25759071 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295 		JBrowse link
delayed palatal shelf elevation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 IAGP MGI PMID:15037318 NCBI chr 2:58,336,450...58,456,840
Ensembl chr 2:58,278,656...58,457,169 		JBrowse link
G Crkl v-crk avian sarcoma virus CT10 oncogene homolog-like IAGP MGI PMID:25565927 NCBI chr16:17,269,849...17,305,304
Ensembl chr16:17,269,851...17,305,298 		JBrowse link
G Fgf9 fibroblast growth factor 9 IAGP MGI PMID:33959039 NCBI chr14:58,308,543...58,350,311
Ensembl chr14:58,308,004...58,350,177 		JBrowse link
G Fuz fuzzy planar cell polarity protein IAGP MGI PMID:21935430 NCBI chr 7:44,545,517...44,552,053
Ensembl chr 7:44,545,503...44,552,055 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:15037318 PMID:29986157 PMID:33772547 PMID:35151207 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Osr2 odd-skipped related 2 IAGP MGI PMID:19389375 NCBI chr15:35,296,244...35,303,451
Ensembl chr15:35,296,244...35,303,451 		JBrowse link
G Prmt1 protein arginine N-methyltransferase 1 IAGP MGI PMID:29986157 NCBI chr 7:44,626,179...44,635,844
Ensembl chr 7:44,625,413...44,635,992 		JBrowse link
G Rere arginine glutamic acid dipeptide (RE) repeats IAGP MGI PMID:33772547 NCBI chr 4:150,365,372...150,706,423
Ensembl chr 4:150,366,103...150,706,423 		JBrowse link
G Rspo2 R-spondin 2 IAGP MGI PMID:21237142 NCBI chr15:42,884,184...43,034,990
Ensembl chr15:42,884,190...43,034,222 		JBrowse link
G Setdb1 SET domain, bifurcated 1 IAGP MGI PMID:35151207 NCBI chr 3:95,230,836...95,264,513
Ensembl chr 3:95,230,836...95,264,513 		JBrowse link
G Six2 sine oculis-related homeobox 2 IAGP MGI PMID:31765609 NCBI chr17:85,970,276...85,995,682
Ensembl chr17:85,991,705...85,995,702 		JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 IAGP MGI PMID:26826126 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573 		JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 IAGP MGI PMID:23638914 NCBI chr 3:34,704,144...34,706,610
Ensembl chr 3:34,704,554...34,706,610 		JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1-like IAGP MGI PMID:33446878 NCBI chr10:75,047,872...75,148,234
Ensembl chr10:75,047,905...75,148,577 		JBrowse link
G Tbx2 T-box 2 IAGP MGI PMID:19769959 NCBI chr11:85,723,441...85,732,774
Ensembl chr11:85,723,377...85,732,774 		JBrowse link
G Trps1 transcriptional repressor GATA binding 1 IAGP MGI PMID:31130868 NCBI chr15:50,518,149...50,754,027
Ensembl chr15:50,518,148...50,753,859 		JBrowse link
G Wiz widely-interspaced zinc finger motifs IAGP MGI PMID:34150743 NCBI chr17:32,573,021...32,608,463
Ensembl chr17:32,573,029...32,608,413 		JBrowse link
failure of palatal shelf elevation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgap29 Rho GTPase activating protein 29 IAGP MGI PMID:28817352 NCBI chr 3:121,746,752...121,810,326
Ensembl chr 3:121,746,190...121,810,402 		JBrowse link
G Bcor BCL6 interacting corepressor IAGP MGI PMID:32692983 NCBI chr  X:11,902,976...12,026,769
Ensembl chr  X:11,902,979...12,026,594 		JBrowse link
G Bmp2 bone morphogenetic protein 2 IAGP MGI PMID:30413887 NCBI chr 2:133,394,079...133,404,816
Ensembl chr 2:133,394,079...133,404,805 		JBrowse link
G Boc BOC cell adhesion associated, oncogene regulated IAGP MGI PMID:21183473 PMID:27811357 NCBI chr16:44,305,408...44,379,233
Ensembl chr16:44,305,412...44,379,260 		JBrowse link
G Ccn2 cellular communication network factor 2 IAGP MGI PMID:12736220 NCBI chr10:24,471,340...24,474,581
Ensembl chr10:24,471,340...24,474,581 		JBrowse link
G Cdc42 cell division cycle 42 IAGP MGI PMID:28326341 NCBI chr 4:137,047,011...137,085,007
Ensembl chr 4:137,047,007...137,085,031 		JBrowse link
G Cdon cell adhesion molecule-related/down-regulated by oncogenes IAGP MGI PMID:21183473 NCBI chr 9:35,332,836...35,418,948
Ensembl chr 9:35,332,424...35,418,948 		JBrowse link
G Dhrs3 dehydrogenase/reductase 3 IAGP MGI PMID:24005908 NCBI chr 4:144,618,712...144,654,214
Ensembl chr 4:144,619,397...144,654,779 		JBrowse link
G Dicer1 dicer 1, ribonuclease type III IAGP MGI PMID:23716939 NCBI chr12:104,654,001...104,718,331
Ensembl chr12:104,654,001...104,718,211 		JBrowse link
G Ednrb endothelin receptor type B IAGP MGI PMID:17693063 NCBI chr14:104,052,055...104,081,764
Ensembl chr14:104,052,061...104,081,838 		JBrowse link
G Efnb1 ephrin B1 IAGP MGI PMID:15037550 NCBI chr  X:98,179,667...98,192,628
Ensembl chr  X:98,179,736...98,192,597 		JBrowse link
G Fgf18 fibroblast growth factor 18 IAGP MGI PMID:11937493 NCBI chr11:33,066,970...33,097,400
Ensembl chr11:33,067,430...33,097,400 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:12514106 PMID:23754280 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Flna filamin, alpha IAGP MGI PMID:16825286 NCBI chr  X:73,267,067...73,293,787
Ensembl chr  X:73,267,067...73,293,426 		JBrowse link
G Foxf2 forkhead box F2 IAGP MGI PMID:12812790 NCBI chr13:31,809,686...31,815,390
Ensembl chr13:31,809,799...31,815,386 		JBrowse link
G Fzd1 frizzled class receptor 1 IAGP MGI PMID:20940229 NCBI chr 5:4,803,839...4,808,216
Ensembl chr 5:4,803,839...4,808,035 		JBrowse link
G Fzd2 frizzled class receptor 2 IAGP MGI PMID:20940229 NCBI chr11:102,495,257...102,498,884
Ensembl chr11:102,495,222...102,498,884 		JBrowse link
G Gad1 glutamate decarboxylase 1 IAGP MGI PMID:20333300 NCBI chr 2:70,392,109...70,432,358
Ensembl chr 2:70,383,416...70,432,358 		JBrowse link
G Gas1 growth arrest specific 1 IAGP MGI PMID:27811357 NCBI chr13:60,322,219...60,325,179
Ensembl chr13:60,322,219...60,325,179 		JBrowse link
G Golgb1 golgi autoantigen, golgin subfamily b, macrogolgin 1 IAGP MGI PMID:27226319 NCBI chr16:36,695,455...36,753,447
Ensembl chr16:36,695,502...36,753,447 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta IAGP MGI PMID:20981831 NCBI chr16:37,909,363...38,066,446
Ensembl chr16:37,909,363...38,066,446 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:18483623 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:15037550 PMID:17376812 PMID:17610273 PMID:23546880 PMID:23754280 More... NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IAGP MGI PMID:19211672 PMID:19341725 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668 		JBrowse link
G Has2 hyaluronan synthase 2 IAGP MGI PMID:31526805 NCBI chr15:56,529,023...56,557,942
Ensembl chr15:56,529,023...56,557,935 		JBrowse link
G Hoxa2 homeobox A2 IAGP MGI PMID:19653318 PMID:29218017 NCBI chr 6:52,139,389...52,141,808
Ensembl chr 6:52,139,397...52,141,811 		JBrowse link
G Irf6 interferon regulatory factor 6 IAGP MGI PMID:20196077 NCBI chr 1:192,835,420...192,854,344
Ensembl chr 1:192,835,419...192,854,331 		JBrowse link
G Jag2 jagged 2 IAGP MGI PMID:9531541 NCBI chr12:112,871,439...112,893,437
Ensembl chr12:112,871,439...112,893,396 		JBrowse link
G Loxl3 lysyl oxidase-like 3 IAGP MGI PMID:26307084 NCBI chr 6:83,011,186...83,029,547
Ensembl chr 6:83,011,154...83,029,543 		JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 IAGP MGI PMID:23546880 NCBI chr 4:31,963,659...32,023,470
Ensembl chr 4:31,964,097...32,023,467 		JBrowse link
G Mapk1 mitogen-activated protein kinase 1 IAGP MGI PMID:26395480 NCBI chr16:16,801,246...16,865,317
Ensembl chr16:16,801,246...16,865,317 		JBrowse link
G Med23 mediator complex subunit 23 IAGP MGI PMID:33155500 NCBI chr10:24,745,889...24,789,358
Ensembl chr10:24,745,884...24,789,579 		JBrowse link
G Memo1 mediator of cell motility 1 IAGP MGI PMID:26746790 NCBI chr17:74,493,759...74,602,677
Ensembl chr17:74,506,031...74,602,516 		JBrowse link
G Mnt max binding protein IAGP MGI PMID:15028671 NCBI chr11:74,721,651...74,736,551
Ensembl chr11:74,721,746...74,736,551 		JBrowse link
G Myh10 myosin, heavy polypeptide 10, non-muscle IAGP MGI PMID:24825879 NCBI chr11:68,581,228...68,707,451
Ensembl chr11:68,582,385...68,707,458 		JBrowse link
G Pax3 paired box 3 IAGP MGI PMID:18483623 PMID:32692983 NCBI chr 1:78,077,904...78,173,773
Ensembl chr 1:78,077,904...78,173,771 		JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:17610273 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607 		JBrowse link
G Pdgfc platelet-derived growth factor, C polypeptide IAGP MGI PMID:15361870 NCBI chr 3:80,943,723...81,121,347
Ensembl chr 3:80,943,723...81,121,347 		JBrowse link
G Pitx1 paired-like homeodomain transcription factor 1 IAGP MGI PMID:10101115 NCBI chr13:55,972,857...55,984,002
Ensembl chr13:55,972,864...55,984,005 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 IAGP MGI PMID:24689077 NCBI chr15:93,396,992...93,494,147
Ensembl chr15:93,396,995...93,493,772 		JBrowse link
G Rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IAGP MGI PMID:10391239 NCBI chr11:120,671,571...120,675,077
Ensembl chr11:120,671,572...120,675,033 		JBrowse link
G Ripk4 receptor-interacting serine-threonine kinase 4 IAGP MGI PMID:25430793 NCBI chr16:97,543,133...97,564,979
Ensembl chr16:97,543,133...97,564,987 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 IAGP MGI PMID:14745966 NCBI chr13:53,263,353...53,440,160
Ensembl chr13:53,263,348...53,440,160 		JBrowse link
G Slc32a1 solute carrier family 32 (GABA vesicular transporter), member 1 IAGP MGI PMID:20333300 NCBI chr 2:158,449,158...158,457,667
Ensembl chr 2:158,452,687...158,457,668 		JBrowse link
G Snai1 snail family zinc finger 1 IAGP MGI PMID:17376812 NCBI chr 2:167,380,115...167,384,734
Ensembl chr 2:167,380,115...167,384,734 		JBrowse link
G Snai2 snail family zinc finger 2 IAGP MGI PMID:17376812 NCBI chr16:14,523,716...14,527,259
Ensembl chr16:14,523,716...14,527,249 		JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 IAGP MGI PMID:23638914 NCBI chr 3:34,704,144...34,706,610
Ensembl chr 3:34,704,554...34,706,610 		JBrowse link
G Sox5 SRY (sex determining region Y)-box 5 IAGP MGI PMID:11702786 NCBI chr 6:143,774,151...144,728,008
Ensembl chr 6:143,774,151...144,727,703 		JBrowse link
G Tbx10 T-box 10 IAGP MGI PMID:15118109 NCBI chr19:4,042,752...4,049,512
Ensembl chr19:4,042,752...4,049,512 		JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 IAGP MGI PMID:10888597 NCBI chr18:60,946,827...60,982,055
Ensembl chr18:60,946,827...60,982,043 		JBrowse link
G Tfrc transferrin receptor IAGP MGI PMID:27362800 NCBI chr16:32,427,714...32,451,612
Ensembl chr16:32,427,738...32,451,612 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 IAGP MGI PMID:9217007 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
G Tgfbr3 transforming growth factor, beta receptor III IAGP MGI PMID:25382630 NCBI chr 5:107,254,433...107,437,495
Ensembl chr 5:107,254,436...107,437,495 		JBrowse link
G Zfhx4 zinc finger homeodomain 4 IAGP MGI PMID:34732852 NCBI chr 3:5,276,268...5,480,921
Ensembl chr 3:5,283,586...5,480,917 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16965
    digestive/alimentary phenotype 1912
      abnormal digestive system morphology 1568
        abnormal palate morphology 449
          abnormal secondary palate morphology 237
            cleft secondary palate 192
              abnormal palatal shelf elevation 83
                delayed palatal shelf elevation 17
                failure of palatal shelf elevation 54
Path 2
Term Annotations click to browse term
  mammalian phenotype 16965
    growth/size/body region phenotype 7037
      abnormal head morphology 1354
        abnormal facial morphology 1104
          abnormal mouth morphology 813
            abnormal palate morphology 449
              abnormal palate development 184
                abnormal secondary palate development 177
                  abnormal palatal shelf morphology 174
                    abnormal palatal shelf elevation 83
                      delayed palatal shelf elevation 17
                      failure of palatal shelf elevation 54
paths to the root