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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal pituitary infundibular stalk morphology
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Accession:MP:0009463 term browser browse the term
Definition:any structural anomaly of the apical portion of the tubular structure extending from the hypothalamus to the posterior lobe of the pituitary gland
Synonyms:exact_synonym: abnormal hypophyseal stalk;   abnormal infundibular stem morphology;   abnormal pituitary infundibulum;   abnormal pituitary stalk morphology


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abnormal pituitary infundibular stalk morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emx1 empty spiracles homeobox 1 IAGP MGI PMID:17426285 NCBI chr 6:85,164,913...85,181,445
Ensembl chr 6:85,164,420...85,181,444 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 IAGP MGI PMID:17426285 NCBI chr16:29,883,259...29,886,614
Ensembl chr16:29,883,202...29,886,614 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 IAGP MGI PMID:17426285 NCBI chr 4:155,042,358...155,046,829
Ensembl chr 4:155,045,380...155,046,828 		JBrowse link
G Sox3 SRY (sex determining region Y)-box 3 IAGP MGI PMID:23505376 NCBI chr  X:59,934,972...59,937,045
Ensembl chr  X:59,934,972...59,937,036 		JBrowse link
absent pituitary infundibular stalk term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hesx1 homeobox gene expressed in ES cells IAGP MGI PMID:9620767 NCBI chr14:26,716,322...26,724,286
Ensembl chr14:26,716,373...26,724,286 		JBrowse link
G Nkx2-1 NK2 homeobox 1 IAGP MGI PMID:9806931 NCBI chr12:56,578,741...56,583,570
Ensembl chr12:56,578,743...56,583,693 		JBrowse link
G Nog noggin IAGP MGI PMID:17359964 NCBI chr11:89,191,464...89,193,385
Ensembl chr11:89,191,464...89,193,158 		JBrowse link
G Sox3 SRY (sex determining region Y)-box 3 IAGP MGI PMID:23505376 NCBI chr  X:59,934,972...59,937,045
Ensembl chr  X:59,934,972...59,937,036 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 17275
    endocrine/exocrine gland phenotype 3541
      abnormal gland morphology 3307
        abnormal endocrine gland morphology 1450
          abnormal neuroendocrine gland morphology 210
            abnormal pituitary gland morphology 177
              abnormal neurohypophysis morphology 24
                abnormal pituitary infundibular stalk morphology 7
                  absent pituitary infundibular stalk 4
Path 2
Term Annotations click to browse term
  mammalian phenotype 17275
    nervous system phenotype 4722
      abnormal nervous system morphology 3729
        abnormal brain morphology 2219
          abnormal forebrain morphology 1412
            abnormal diencephalon morphology 385
              abnormal pituitary gland morphology 177
                abnormal neurohypophysis morphology 24
                  abnormal pituitary infundibular stalk morphology 7
                    absent pituitary infundibular stalk 4
paths to the root