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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal brain internal capsule morphology
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Accession:MP:0008128 term browser browse the term
Definition:any structural anomaly of the area of white matter in the brain that lies between the lenticular and caudate nuclei, and contains a group of myelinated ascending and descending axonal fiber tracts that connects the cerebral cortex to the brain stem and spinal cord
Comment:This structure is NOT part of the basal ganglia or striatum.
Synonyms:exact_synonym: abnormal internal capsule of telencephalon morphology


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abnormal brain internal capsule morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 4933434E20Rik RIKEN cDNA 4933434E20 gene IEA MGI NCBI chr 3:89,958,941...89,969,754
Ensembl chr 3:89,958,943...89,970,648
Ensembl chr 3:89,958,943...89,970,648 		JBrowse link
G Arsa arylsulfatase A IAGP MGI PMID:10505624 NCBI chr15:89,356,679...89,361,627
Ensembl chr15:89,356,679...89,361,628 		JBrowse link
G Arx aristaless related homeobox IAGP MGI PMID:12379852 NCBI chr  X:92,330,113...92,341,963
Ensembl chr  X:92,330,051...92,341,963 		JBrowse link
G B9d2 B9 protein domain 2 IEA MGI NCBI chr 7:25,380,205...25,385,987
Ensembl chr 7:25,380,205...25,385,983 		JBrowse link
G Canx calnexin IAGP MGI PMID:20400506 NCBI chr11:50,184,784...50,216,500
Ensembl chr11:50,184,788...50,216,500 		JBrowse link
G Cav1 caveolin 1, caveolae protein IAGP MGI PMID:16750274 NCBI chr 6:17,306,387...17,341,323
Ensembl chr 6:17,306,334...17,341,451 		JBrowse link
G Celsr3 cadherin, EGF LAG seven-pass G-type receptor 3 IAGP MGI PMID:18487195 NCBI chr 9:108,703,244...108,730,168
Ensembl chr 9:108,703,519...108,730,168 		JBrowse link
G Clcn2 chloride channel, voltage-sensitive 2 IAGP MGI PMID:17567819 NCBI chr16:20,521,185...20,536,496
Ensembl chr16:20,521,714...20,536,496 		JBrowse link
G Dbn1 drebrin 1 IEA MGI NCBI chr13:55,621,241...55,635,874
Ensembl chr13:55,621,242...55,635,924 		JBrowse link
G Dclk1 doublecortin-like kinase 1 IAGP MGI PMID:16387638 NCBI chr 3:55,149,724...55,446,489
Ensembl chr 3:55,149,785...55,446,489 		JBrowse link
G Dcx doublecortin IAGP MGI PMID:16387638 NCBI chr  X:142,638,838...142,716,392
Ensembl chr  X:142,638,838...142,716,307 		JBrowse link
G Dhx35 DEAH-box helicase 35 IEA MGI NCBI chr 2:158,636,674...158,700,141
Ensembl chr 2:158,636,727...158,700,134 		JBrowse link
G Dscam DS cell adhesion molecule IAGP MGI PMID:21904980 NCBI chr16:96,388,652...96,971,935
Ensembl chr16:96,392,040...96,971,952 		JBrowse link
G Ebf1 early B cell factor 1 IAGP MGI PMID:10556054 NCBI chr11:44,502,738...44,898,923
Ensembl chr11:44,508,144...44,898,918 		JBrowse link
G Eif2b5 eukaryotic translation initiation factor 2B, subunit 5 epsilon IAGP MGI PMID:20826436 NCBI chr16:20,317,544...20,328,073
Ensembl chr16:20,317,567...20,328,073 		JBrowse link
G Elp2 elongator acetyltransferase complex subunit 2 IAGP MGI PMID:33976153 NCBI chr18:24,737,018...24,771,887
Ensembl chr18:24,735,923...24,772,564 		JBrowse link
G Emx1 empty spiracles homeobox 1 IAGP MGI PMID:18487195 PMID:24930700 NCBI chr 6:85,164,913...85,181,445
Ensembl chr 6:85,164,420...85,181,444 		JBrowse link
G Ephb1 Eph receptor B1 IAGP MGI PMID:24997765 NCBI chr 9:101,799,327...102,231,892
Ensembl chr 9:101,799,327...102,231,892 		JBrowse link
G Foxg1 forkhead box G1 IAGP MGI PMID:17470284 PMID:18487195 NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644 		JBrowse link
G H13 histocompatibility 13 IEA MGI NCBI chr 2:152,511,292...152,550,590
Ensembl chr 2:152,511,381...152,550,590 		JBrowse link
G Hspa5 heat shock protein 5 IAGP MGI PMID:22821687 NCBI chr 2:34,662,102...34,666,541
Ensembl chr 2:34,661,982...34,667,559 		JBrowse link
G Htt huntingtin IAGP MGI PMID:11062468 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878 		JBrowse link
G Islr2 immunoglobulin superfamily containing leucine-rich repeat 2 IAGP MGI PMID:24930700 NCBI chr 9:58,103,580...58,113,563
Ensembl chr 9:58,103,580...58,111,602 		JBrowse link
G Man2c1 mannosidase, alpha, class 2C, member 1 IAGP MGI PMID:24550399 NCBI chr 9:57,037,953...57,049,497
Ensembl chr 9:57,037,974...57,050,006 		JBrowse link
G Map3k12 mitogen-activated protein kinase kinase kinase 12 IAGP MGI PMID:17108173 PMID:17901218 NCBI chr15:102,406,079...102,425,311
Ensembl chr15:102,406,081...102,425,499 		JBrowse link
G Morc2a microrchidia 2A IEA MGI NCBI chr11:3,599,132...3,640,477
Ensembl chr11:3,599,191...3,640,477 		JBrowse link
G Mycbp2 MYC binding protein 2, E3 ubiquitin protein ligase IAGP MGI PMID:17901218 NCBI chr14:103,350,847...103,584,276
Ensembl chr14:103,350,847...103,584,250 		JBrowse link
G Pax6 paired box 6 IAGP MGI PMID:19500363 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Polb polymerase (DNA directed), beta IEA MGI NCBI chr 8:23,118,135...23,143,482
Ensembl chr 8:23,118,142...23,143,451 		JBrowse link
G Psph phosphoserine phosphatase IEA MGI NCBI chr 5:129,842,622...129,864,318
Ensembl chr 5:129,842,622...129,864,513 		JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 IAGP MGI PMID:24448406 NCBI chr 3:119,512,390...119,578,296
Ensembl chr 3:119,512,391...119,578,115 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 IAGP MGI PMID:27161151 NCBI chr15:89,376,929...89,444,464
Ensembl chr15:89,383,826...89,444,464 		JBrowse link
G Sp8 trans-acting transcription factor 8 IAGP MGI PMID:17470284 NCBI chr12:118,809,968...118,816,313
Ensembl chr12:118,810,064...118,816,311 		JBrowse link
G Tubb2b tubulin, beta 2B class IIB IAGP MGI PMID:23727838 NCBI chr13:34,310,991...34,314,337
Ensembl chr13:34,310,731...34,314,449 		JBrowse link
absent brain internal capsule term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr3 cadherin, EGF LAG seven-pass G-type receptor 3 IAGP MGI PMID:15778712 NCBI chr 9:108,703,244...108,730,168
Ensembl chr 9:108,703,519...108,730,168 		JBrowse link
G Cntn2 contactin 2 IAGP MGI PMID:23968836 NCBI chr 1:132,437,163...132,470,989
Ensembl chr 1:132,437,165...132,470,994 		JBrowse link
G Dclk1 doublecortin-like kinase 1 IAGP MGI PMID:16387638 NCBI chr 3:55,149,724...55,446,489
Ensembl chr 3:55,149,785...55,446,489 		JBrowse link
G Dcx doublecortin IAGP MGI PMID:16387638 NCBI chr  X:142,638,838...142,716,392
Ensembl chr  X:142,638,838...142,716,307 		JBrowse link
G Enah ENAH actin regulator IAGP MGI PMID:17988629 NCBI chr 1:181,723,949...181,848,132
Ensembl chr 1:181,723,949...181,847,555 		JBrowse link
G Evl Ena-vasodilator stimulated phosphoprotein IAGP MGI PMID:17988629 NCBI chr12:108,520,942...108,654,775
Ensembl chr12:108,520,979...108,654,775 		JBrowse link
G Fbxo45 F-box protein 45 IAGP MGI PMID:19398581 NCBI chr16:32,048,930...32,065,843
Ensembl chr16:32,048,930...32,065,976 		JBrowse link
G Fzd3 frizzled class receptor 3 IAGP MGI PMID:14671310 NCBI chr14:65,429,890...65,499,912
Ensembl chr14:65,429,898...65,499,912 		JBrowse link
G Islr2 immunoglobulin superfamily containing leucine-rich repeat 2 IAGP MGI PMID:24930700 NCBI chr 9:58,103,580...58,113,563
Ensembl chr 9:58,103,580...58,111,602 		JBrowse link
G Map3k12 mitogen-activated protein kinase kinase kinase 12 IAGP MGI PMID:17901218 NCBI chr15:102,406,079...102,425,311
Ensembl chr15:102,406,081...102,425,499 		JBrowse link
G Mycbp2 MYC binding protein 2, E3 ubiquitin protein ligase IAGP MGI PMID:17901218 PMID:23968836 NCBI chr14:103,350,847...103,584,276
Ensembl chr14:103,350,847...103,584,250 		JBrowse link
G Psph phosphoserine phosphatase IEA MGI NCBI chr 5:129,842,622...129,864,318
Ensembl chr 5:129,842,622...129,864,513 		JBrowse link
G Rpgrip1l Rpgrip1-like IEA MGI NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890 		JBrowse link
G Ttl tubulin tyrosine ligase IAGP MGI PMID:15899979 NCBI chr 2:128,907,867...128,938,203
Ensembl chr 2:128,907,862...128,938,203 		JBrowse link
G Vasp vasodilator-stimulated phosphoprotein IAGP MGI PMID:17988629 NCBI chr 7:18,990,854...19,005,779
Ensembl chr 7:18,990,854...19,005,742 		JBrowse link
decreased brain internal capsule size term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ank2 ankyrin 2, brain IAGP MGI PMID:9832558 NCBI chr 3:126,715,256...127,293,996
Ensembl chr 3:126,715,261...127,292,999 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 IAGP MGI PMID:36232804 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659 		JBrowse link
G Ephb1 Eph receptor B1 IAGP MGI PMID:24997765 NCBI chr 9:101,799,327...102,231,892
Ensembl chr 9:101,799,327...102,231,892 		JBrowse link
G Trim67 tripartite motif-containing 67 IAGP MGI PMID:29911180 NCBI chr 8:125,519,758...125,561,443
Ensembl chr 8:125,519,831...125,561,452 		JBrowse link
increased brain internal capsule size term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kptn kaptin IAGP MGI PMID:37437211 NCBI chr 7:15,853,801...15,861,441
Ensembl chr 7:15,853,820...15,861,441 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16963
    nervous system phenotype 4639
      abnormal nervous system morphology 3671
        abnormal brain morphology 2142
          abnormal brain white matter morphology 286
            abnormal brain internal capsule morphology 46
              abnormal brain internal capsule topology 0
              absent brain internal capsule 15
              decreased brain internal capsule size 4
              increased brain internal capsule size 1
paths to the root