Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal small intestinal villus morphology
go back to main search page
Accession:MP:0008108 term browser browse the term
Definition:any structural anomaly of the tiny hair-like projections that protrude from the inside of the small intestine that contain blood vessels that capture digested nutrients that are absorbed through the intestinal wall; the villi increase the absorptive surface area of the small intestine by approximately 30-fold
Synonyms:exact_synonym: abnormal small intestinal villi


show annotations for term's descendants           Sort by:
abnormal small intestinal villus morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angpt2 angiopoietin 2 IAGP MGI PMID:12361603 NCBI chr 8:18,740,279...18,791,578
Ensembl chr 8:18,740,279...18,791,578 		JBrowse link
G Ap1m2 adaptor protein complex AP-1, mu 2 subunit IAGP MGI PMID:23684748 NCBI chr 9:21,206,753...21,223,617
Ensembl chr 9:21,205,571...21,223,633 		JBrowse link
G B3gnt6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 IAGP MGI PMID:27229122 NCBI chr 7:97,841,622...97,848,682
Ensembl chr 7:97,841,624...97,848,688 		JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 IAGP MGI PMID:7812968 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Braf Braf transforming gene IAGP MGI PMID:23845441 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Brca1 breast cancer 1, early onset IAGP MGI PMID:19996295 NCBI chr11:101,379,587...101,442,808
Ensembl chr11:101,379,590...101,442,781 		JBrowse link
G C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 IAGP MGI PMID:27229122 NCBI chr 6:7,845,224...7,872,042
Ensembl chr 6:7,844,842...7,875,687 		JBrowse link
G Camsap3 calmodulin regulated spectrin-associated protein family, member 3 IAGP MGI PMID:26715742 NCBI chr 8:3,637,237...3,659,075
Ensembl chr 8:3,637,293...3,659,075 		JBrowse link
G Cdc25a cell division cycle 25A IAGP MGI PMID:19273838 NCBI chr 9:109,704,545...109,722,963
Ensembl chr 9:109,704,647...109,722,963 		JBrowse link
G Cdc25b cell division cycle 25B IAGP MGI PMID:19273838 NCBI chr 2:131,028,356...131,040,431
Ensembl chr 2:131,028,869...131,040,417 		JBrowse link
G Cdc25c cell division cycle 25C IAGP MGI PMID:19273838 NCBI chr18:34,866,046...34,884,644
Ensembl chr18:34,866,046...34,884,586 		JBrowse link
G Cdc42 cell division cycle 42 IAGP MGI PMID:22354172 NCBI chr 4:137,047,011...137,085,007
Ensembl chr 4:137,047,007...137,085,031 		JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A IAGP MGI PMID:16322092 NCBI chr17:29,309,953...29,319,696
Ensembl chr17:29,309,950...29,319,701 		JBrowse link
G Cdkn1b cyclin dependent kinase inhibitor 1B IAGP MGI PMID:16322092 NCBI chr 6:134,897,364...134,902,488
Ensembl chr 6:134,897,364...134,902,476 		JBrowse link
G Cdx2 caudal type homeobox 2 IAGP MGI PMID:22190642 NCBI chr 5:147,237,710...147,244,059
Ensembl chr 5:147,237,615...147,244,080 		JBrowse link
G Cldn15 claudin 15 IAGP MGI PMID:18242218 NCBI chr 5:136,996,723...137,004,699
Ensembl chr 5:136,995,470...137,004,712 		JBrowse link
G Crb3 crumbs family member 3 IAGP MGI PMID:24164893 PMID:26631503 NCBI chr17:57,368,583...57,372,920
Ensembl chr17:57,366,105...57,372,918 		JBrowse link
G Ctps1 cytidine 5'-triphosphate synthase 1 IAGP MGI PMID:38438357 NCBI chr 4:120,397,065...120,427,473
Ensembl chr 4:120,397,065...120,427,473 		JBrowse link
G Cx3cr1 C-X3-C motif chemokine receptor 1 IAGP MGI PMID:15653504 NCBI chr 9:119,877,749...119,897,362
Ensembl chr 9:119,877,749...119,898,945 		JBrowse link
G E2f4 E2F transcription factor 4 IAGP MGI PMID:10983977 NCBI chr 8:106,024,295...106,032,002
Ensembl chr 8:106,024,295...106,032,002 		JBrowse link
G Ehf ets homologous factor IAGP MGI PMID:30224759 NCBI chr 2:103,093,776...103,133,620
Ensembl chr 2:103,093,778...103,133,623 		JBrowse link
G Ep300 E1A binding protein p300 IAGP MGI PMID:14517255 NCBI chr15:81,470,329...81,536,273
Ensembl chr15:81,469,552...81,536,278 		JBrowse link
G Foxl1 forkhead box L1 IAGP MGI PMID:9203584 NCBI chr 8:121,854,572...121,857,383
Ensembl chr 8:121,854,679...121,857,383 		JBrowse link
G Gadd45gip1 growth arrest and DNA-damage-inducible, gamma interacting protein 1 IAGP MGI PMID:19801644 NCBI chr 8:85,558,911...85,562,111
Ensembl chr 8:85,558,151...85,562,111 		JBrowse link
G Gata6os GATA binding protein 6, opposite strand IAGP MGI PMID:30224759 NCBI chr18:11,042,037...11,052,567
Ensembl chr18:10,987,944...11,053,256 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:19273838 PMID:19897935 PMID:20404087 PMID:22354172 PMID:22896614 More... NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,055,336 		JBrowse link
G Igsf3 immunoglobulin superfamily, member 3 IAGP MGI PMID:37821496 NCBI chr 3:101,284,306...101,370,375
Ensembl chr 3:101,284,399...101,370,375 		JBrowse link
G Klf5 Kruppel-like transcription factor 5 IAGP MGI PMID:12101409 NCBI chr14:99,536,127...99,550,848
Ensembl chr14:99,536,127...99,552,472 		JBrowse link
G Lama5 laminin, alpha 5 IAGP MGI PMID:28735299 NCBI chr 2:179,818,166...179,867,652
Ensembl chr 2:179,818,166...179,867,652 		JBrowse link
G Lgr5 leucine rich repeat containing G protein coupled receptor 5 IAGP MGI PMID:22354172 PMID:30224759 NCBI chr10:115,286,219...115,423,685
Ensembl chr10:115,286,216...115,423,685 		JBrowse link
G Lin9 lin-9 DREAM MuvB core complex component IAGP MGI PMID:20404087 NCBI chr 1:180,468,715...180,518,252
Ensembl chr 1:180,468,715...180,518,259 		JBrowse link
G Lipa lysosomal acid lipase A IAGP MGI PMID:11290820 NCBI chr19:34,469,716...34,504,874
Ensembl chr19:34,469,718...34,504,874 		JBrowse link
G Man2c1 mannosidase, alpha, class 2C, member 1 IAGP MGI PMID:24550399 NCBI chr 9:57,037,953...57,049,497
Ensembl chr 9:57,037,974...57,050,006 		JBrowse link
G Mcm2 minichromosome maintenance complex component 2 IAGP MGI PMID:17717065 NCBI chr 6:88,860,456...88,875,762
Ensembl chr 6:88,860,456...88,875,762 		JBrowse link
G Myo5b myosin VB IAGP MGI PMID:26392529 NCBI chr18:74,575,435...74,905,769
Ensembl chr18:74,574,007...74,904,564 		JBrowse link
G Neurog3 neurogenin 3 IAGP MGI PMID:20364088 NCBI chr10:61,968,869...61,970,542
Ensembl chr10:61,968,869...61,970,542 		JBrowse link
G Nkx2-3 NK2 homeobox 3 IAGP MGI PMID:10926756 NCBI chr19:43,600,764...43,604,331
Ensembl chr19:43,600,764...43,604,331 		JBrowse link
G Orc1 origin recognition complex, subunit 1 IAGP MGI PMID:29967292 NCBI chr 4:108,436,651...108,472,030
Ensembl chr 4:108,436,620...108,472,030 		JBrowse link
G Pi4ka phosphatidylinositol 4-kinase alpha IAGP MGI PMID:22896614 NCBI chr16:17,098,215...17,224,178
Ensembl chr16:17,098,215...17,224,178 		JBrowse link
G Plet1 placenta expressed transcript 1 IAGP MGI PMID:30537036 NCBI chr 9:50,405,825...50,416,939
Ensembl chr 9:50,405,825...50,416,782 		JBrowse link
G Ppargc1a peroxisome proliferative activated receptor, gamma, coactivator 1 alpha IAGP MGI PMID:21467224 NCBI chr 5:51,611,591...52,273,316
Ensembl chr 5:51,611,592...51,725,068 		JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:19168705 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560 		JBrowse link
G Rab11a RAB11A, member RAS oncogene family IAGP MGI PMID:25063677 NCBI chr 9:64,622,582...64,645,038
Ensembl chr 9:64,622,581...64,645,040 		JBrowse link
G Rc3h1 RING CCCH (C3H) domains 1 IAGP MGI PMID:23451046 NCBI chr 1:160,733,981...160,802,546
Ensembl chr 1:160,733,988...160,802,548 		JBrowse link
G Rela v-rel reticuloendotheliosis viral oncogene homolog A (avian) IAGP MGI PMID:18250470 NCBI chr19:5,686,993...5,698,162
Ensembl chr19:5,687,511...5,698,158 		JBrowse link
G Runx1t1 RUNX1 translocation partner 1 IAGP MGI PMID:11463846 NCBI chr 4:13,742,628...13,895,056
Ensembl chr 4:13,743,436...13,893,649 		JBrowse link
G Sav1 salvador family WW domain containing 1 IAGP MGI PMID:18369314 NCBI chr12:70,011,786...70,033,864
Ensembl chr12:70,011,786...70,033,776 		JBrowse link
G Slc22a4 solute carrier family 22 (organic cation transporter), member 4 IAGP MGI PMID:20224991 NCBI chr11:53,873,941...53,920,866
Ensembl chr11:53,873,949...53,918,916 		JBrowse link
G Slc39a4 solute carrier family 39 (zinc transporter), member 4 IAGP MGI PMID:22737083 NCBI chr15:76,496,583...76,501,579
Ensembl chr15:76,496,583...76,501,584 		JBrowse link
G Slc6a4 solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 IAGP MGI PMID:27111230 NCBI chr11:76,889,423...76,923,169
Ensembl chr11:76,889,429...76,923,166 		JBrowse link
G Smn1 survival motor neuron 1 IAGP MGI PMID:23263861 NCBI chr13:100,259,713...100,274,206
Ensembl chr13:100,261,360...100,274,198 		JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 IAGP MGI PMID:19897935 NCBI chr12:87,351,832...87,435,129
Ensembl chr12:87,351,832...87,435,129 		JBrowse link
G Stx2 syntaxin 2 IAGP MGI PMID:16710473 NCBI chr 5:129,061,621...129,085,664
Ensembl chr 5:129,061,621...129,085,638 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 IAGP MGI PMID:11984523 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 IAGP MGI PMID:11984523 NCBI chr12:86,103,517...86,125,815
Ensembl chr12:86,103,519...86,125,815 		JBrowse link
G Tnf tumor necrosis factor IAGP MGI PMID:23977323 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983 		JBrowse link
G Tns3 tensin 3 IAGP MGI PMID:15733665 NCBI chr11:8,381,652...8,614,758
Ensembl chr11:8,381,652...8,614,681 		JBrowse link
G Znhit1 zinc finger, HIT domain containing 1 IAGP MGI PMID:30842416 NCBI chr 5:137,011,048...137,016,813
Ensembl chr 5:137,011,018...137,016,875 		JBrowse link
abnormal duodenal goblet cell morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cldn15 claudin 15 IAGP MGI PMID:18242218 NCBI chr 5:136,996,723...137,004,699
Ensembl chr 5:136,995,470...137,004,712 		JBrowse link
abnormal ileal goblet cell morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgap17 Rho GTPase activating protein 17 IAGP MGI PMID:27229483 NCBI chr 7:122,878,372...122,969,171
Ensembl chr 7:122,878,441...122,969,138 		JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:16571105 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
abnormal intestinal villus goblet cell morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Usp22 ubiquitin specific peptidase 22 IAGP MGI PMID:26431380 NCBI chr11:61,042,607...61,065,885
Ensembl chr11:61,042,611...61,065,881 		JBrowse link
abnormal jeujunal goblet cell morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cldn15 claudin 15 IAGP MGI PMID:18242218 NCBI chr 5:136,996,723...137,004,699
Ensembl chr 5:136,995,470...137,004,712 		JBrowse link
abnormal small intestinal microvillus morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1m2 adaptor protein complex AP-1, mu 2 subunit IAGP MGI PMID:23684748 NCBI chr 9:21,206,753...21,223,617
Ensembl chr 9:21,205,571...21,223,633 		JBrowse link
G Cdhr2 cadherin-related family member 2 IAGP MGI PMID:30403560 NCBI chr13:54,849,276...54,884,475
Ensembl chr13:54,849,274...54,884,475 		JBrowse link
G Crb3 crumbs family member 3 IAGP MGI PMID:24164893 NCBI chr17:57,368,583...57,372,920
Ensembl chr17:57,366,105...57,372,918 		JBrowse link
G Ehbp1l1 EH domain binding protein 1-like 1 IAGP MGI PMID:26833786 NCBI chr19:5,757,397...5,776,504
Ensembl chr19:5,757,404...5,776,345 		JBrowse link
G Ezr ezrin IAGP MGI PMID:15809309 NCBI chr17:7,005,530...7,050,179
Ensembl chr17:7,005,440...7,050,183 		JBrowse link
G Gadd45gip1 growth arrest and DNA-damage-inducible, gamma interacting protein 1 IAGP MGI PMID:19801644 NCBI chr 8:85,558,911...85,562,111
Ensembl chr 8:85,558,151...85,562,111 		JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 IAGP MGI PMID:15121863 NCBI chr11:95,847,989...95,896,770
Ensembl chr11:95,847,989...95,896,766 		JBrowse link
G Myo5b myosin VB IAGP MGI PMID:26201991 PMID:26392529 NCBI chr18:74,575,435...74,905,769
Ensembl chr18:74,574,007...74,904,564 		JBrowse link
G Neurog3 neurogenin 3 IAGP MGI PMID:20364088 NCBI chr10:61,968,869...61,970,542
Ensembl chr10:61,968,869...61,970,542 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE type zinc finger containing IAGP MGI PMID:23322734 NCBI chr 1:65,225,796...65,317,855
Ensembl chr 1:65,225,842...65,317,854 		JBrowse link
G Rab8a RAB8A, member RAS oncogene family IAGP MGI PMID:24213529 NCBI chr 8:72,915,044...72,935,210
Ensembl chr 8:72,915,044...72,937,748 		JBrowse link
G Rab8b RAB8B, member RAS oncogene family IAGP MGI PMID:24213529 NCBI chr 9:66,750,891...66,826,987
Ensembl chr 9:66,750,946...66,826,969 		JBrowse link
G Sav1 salvador family WW domain containing 1 IAGP MGI PMID:18369314 NCBI chr12:70,011,786...70,033,864
Ensembl chr12:70,011,786...70,033,776 		JBrowse link
G Wasf1 WASP family, member 1 IAGP MGI PMID:12716942 NCBI chr10:40,759,476...40,814,565
Ensembl chr10:40,759,471...40,814,566 		JBrowse link
abnormal small intestine goblet cell morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:8589719 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
G E2f4 E2F transcription factor 4 IAGP MGI PMID:10983977 NCBI chr 8:106,024,295...106,032,002
Ensembl chr 8:106,024,295...106,032,002 		JBrowse link
G Rpap3 RNA polymerase II associated protein 3 IAGP MGI PMID:34376666 NCBI chr15:97,572,978...97,603,746
Ensembl chr15:97,572,978...97,603,706 		JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B IAGP MGI PMID:33431892 NCBI chr 2:157,870,395...157,920,127
Ensembl chr 2:157,870,417...157,974,217 		JBrowse link
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box IAGP MGI PMID:21383188 PMID:22393260 NCBI chr19:55,730,227...55,922,091
Ensembl chr19:55,730,252...55,922,086 		JBrowse link
G Xbp1 X-box binding protein 1 IAGP MGI PMID:18775308 NCBI chr11:5,470,641...5,475,993
Ensembl chr11:5,470,659...5,475,893 		JBrowse link
blunted small intestinal villi term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epcam epithelial cell adhesion molecule IAGP MGI PMID:24337010 NCBI chr17:87,943,407...87,958,555
Ensembl chr17:87,943,407...87,958,557 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:24557836 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,055,336 		JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 IAGP MGI PMID:24557836 NCBI chr14:56,022,452...56,026,314
Ensembl chr14:56,022,452...56,026,322 		JBrowse link
G Tfrc transferrin receptor IAGP MGI PMID:26324903 NCBI chr16:32,427,714...32,451,612
Ensembl chr16:32,427,738...32,451,612 		JBrowse link
branched small intestinal villi term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Braf Braf transforming gene IAGP MGI PMID:23845441 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:19168705 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560 		JBrowse link
G Stx2 syntaxin 2 IAGP MGI PMID:16710473 NCBI chr 5:129,061,621...129,085,664
Ensembl chr 5:129,061,621...129,085,638 		JBrowse link
clubbed small intestinal villi term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin, alpha 5 IAGP MGI PMID:28735299 NCBI chr 2:179,818,166...179,867,652
Ensembl chr 2:179,818,166...179,867,652 		JBrowse link
decreased small intestinal microvillus size term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb3 crumbs family member 3 IAGP MGI PMID:24164893 NCBI chr17:57,368,583...57,372,920
Ensembl chr17:57,366,105...57,372,918 		JBrowse link
G Ehbp1l1 EH domain binding protein 1-like 1 IAGP MGI PMID:26833786 NCBI chr19:5,757,397...5,776,504
Ensembl chr19:5,757,404...5,776,345 		JBrowse link
G Foxp3 forkhead box P3 IAGP MGI PMID:31296356 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Ikzf4 IKAROS family zinc finger 4 IAGP MGI PMID:31296356 NCBI chr10:128,466,708...128,505,668
Ensembl chr10:128,466,712...128,505,227 		JBrowse link
G Neurog3 neurogenin 3 IAGP MGI PMID:20364088 NCBI chr10:61,968,869...61,970,542
Ensembl chr10:61,968,869...61,970,542 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE type zinc finger containing IAGP MGI PMID:23322734 NCBI chr 1:65,225,796...65,317,855
Ensembl chr 1:65,225,842...65,317,854 		JBrowse link
G Pls1 plastin 1 (I-isoform) IAGP MGI PMID:19321664 NCBI chr 9:95,634,695...95,727,359
Ensembl chr 9:95,634,695...95,727,364 		JBrowse link
G Rab8a RAB8A, member RAS oncogene family IAGP MGI PMID:17597763 NCBI chr 8:72,915,044...72,935,210
Ensembl chr 8:72,915,044...72,937,748 		JBrowse link
G Ush1c USH1 protein network component harmonin IAGP MGI PMID:24725409 NCBI chr 7:45,844,774...45,887,984
Ensembl chr 7:45,844,774...45,887,927 		JBrowse link
decreased small intestinal villus height term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1m2 adaptor protein complex AP-1, mu 2 subunit IAGP MGI PMID:23684748 NCBI chr 9:21,206,753...21,223,617
Ensembl chr 9:21,205,571...21,223,633 		JBrowse link
G Atg16l1 autophagy related 16 like 1 IAGP MGI PMID:36198790 NCBI chr 1:87,683,730...87,720,150
Ensembl chr 1:87,683,592...87,720,150 		JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 IAGP MGI PMID:7812968 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Brca1 breast cancer 1, early onset IAGP MGI PMID:19996295 NCBI chr11:101,379,587...101,442,808
Ensembl chr11:101,379,590...101,442,781 		JBrowse link
G Cdc25a cell division cycle 25A IAGP MGI PMID:19273838 NCBI chr 9:109,704,545...109,722,963
Ensembl chr 9:109,704,647...109,722,963 		JBrowse link
G Cdc25b cell division cycle 25B IAGP MGI PMID:19273838 NCBI chr 2:131,028,356...131,040,431
Ensembl chr 2:131,028,869...131,040,417 		JBrowse link
G Cdc25c cell division cycle 25C IAGP MGI PMID:19273838 NCBI chr18:34,866,046...34,884,644
Ensembl chr18:34,866,046...34,884,586 		JBrowse link
G Cdhr2 cadherin-related family member 2 IAGP MGI PMID:30403560 NCBI chr13:54,849,276...54,884,475
Ensembl chr13:54,849,274...54,884,475 		JBrowse link
G Ctps1 cytidine 5'-triphosphate synthase 1 IAGP MGI PMID:38438357 NCBI chr 4:120,397,065...120,427,473
Ensembl chr 4:120,397,065...120,427,473 		JBrowse link
G Ctsd cathepsin D IAGP MGI PMID:26232697 NCBI chr 7:141,929,647...141,941,564
Ensembl chr 7:141,929,648...141,941,775 		JBrowse link
G Edil3 EGF-like repeats and discoidin I-like domains 3 IAGP MGI PMID:26232697 NCBI chr13:88,969,591...89,471,344
Ensembl chr13:88,969,591...89,471,342 		JBrowse link
G Gadd45gip1 growth arrest and DNA-damage-inducible, gamma interacting protein 1 IAGP MGI PMID:19801644 NCBI chr 8:85,558,911...85,562,111
Ensembl chr 8:85,558,151...85,562,111 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:19273838 PMID:38438357 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,055,336 		JBrowse link
G Hr lysine demethylase and nuclear receptor corepressor IAGP MGI PMID:10536052 NCBI chr14:70,789,644...70,810,988
Ensembl chr14:70,789,652...70,810,988 		JBrowse link
G Mex3a mex3 RNA binding family member A IAGP MGI PMID:32052574 NCBI chr 3:88,439,253...88,448,701
Ensembl chr 3:88,439,702...88,448,703 		JBrowse link
G Ndor1 NADPH dependent diflavin oxidoreductase 1 IAGP MGI PMID:30254136 NCBI chr 2:25,134,825...25,145,458
Ensembl chr 2:25,134,833...25,146,034
Ensembl chr 2:25,134,833...25,146,034
Ensembl chr 2:25,134,833...25,146,034 		JBrowse link
G Orc1 origin recognition complex, subunit 1 IAGP MGI PMID:29967292 NCBI chr 4:108,436,651...108,472,030
Ensembl chr 4:108,436,620...108,472,030 		JBrowse link
G Rnpc3 RNA-binding region (RNP1, RRM) containing 3 IAGP MGI PMID:30254136 NCBI chr 3:113,398,716...113,423,798
Ensembl chr 3:113,398,716...113,423,798 		JBrowse link
G Slc24a3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 IAGP MGI PMID:33807999 NCBI chr 2:145,009,695...145,484,086
Ensembl chr 2:145,009,674...145,484,086 		JBrowse link
G Slc6a4 solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 IAGP MGI PMID:27111230 NCBI chr11:76,889,423...76,923,169
Ensembl chr11:76,889,429...76,923,166 		JBrowse link
G Tcrd T cell receptor delta chain IAGP MGI PMID:36198790 NCBI chr14:54,183,530...54,396,655 JBrowse link
G Thra thyroid hormone receptor alpha IAGP MGI PMID:11416151 NCBI chr11:98,631,539...98,659,832
Ensembl chr11:98,631,464...98,659,832 		JBrowse link
decreased small intestinal villus number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:8605891 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
G Gadd45gip1 growth arrest and DNA-damage-inducible, gamma interacting protein 1 IAGP MGI PMID:19801644 NCBI chr 8:85,558,911...85,562,111
Ensembl chr 8:85,558,151...85,562,111 		JBrowse link
G Pdgfa platelet derived growth factor, alpha IAGP MGI PMID:23938297 NCBI chr 5:138,961,761...138,986,336
Ensembl chr 5:138,961,769...138,983,125 		JBrowse link
G Pdgfc platelet-derived growth factor, C polypeptide IAGP MGI PMID:23938297 NCBI chr 3:80,943,723...81,121,347
Ensembl chr 3:80,943,723...81,121,347 		JBrowse link
G Tnf tumor necrosis factor IAGP MGI PMID:23977323 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983 		JBrowse link
decreased small intestinal villus size term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc25a cell division cycle 25A IAGP MGI PMID:21283624 NCBI chr 9:109,704,545...109,722,963
Ensembl chr 9:109,704,647...109,722,963 		JBrowse link
G Cdc25b cell division cycle 25B IAGP MGI PMID:21283624 NCBI chr 2:131,028,356...131,040,431
Ensembl chr 2:131,028,869...131,040,417 		JBrowse link
G Cdc25c cell division cycle 25C IAGP MGI PMID:21283624 NCBI chr18:34,866,046...34,884,644
Ensembl chr18:34,866,046...34,884,586 		JBrowse link
G Cdk7 cyclin dependent kinase 7 IAGP MGI PMID:22505032 NCBI chr13:100,833,532...100,867,454
Ensembl chr13:100,839,139...100,867,447 		JBrowse link
G Cdx2 caudal type homeobox 2 IAGP MGI PMID:19386267 NCBI chr 5:147,237,710...147,244,059
Ensembl chr 5:147,237,615...147,244,080 		JBrowse link
G E2f4 E2F transcription factor 4 IAGP MGI PMID:10983977 NCBI chr 8:106,024,295...106,032,002
Ensembl chr 8:106,024,295...106,032,002 		JBrowse link
G Enpp7 ectonucleotide pyrophosphatase/phosphodiesterase 7 IAGP MGI PMID:21177474 NCBI chr11:118,879,007...118,884,047
Ensembl chr11:118,879,014...118,884,047 		JBrowse link
G Foxl1 forkhead box L1 IAGP MGI PMID:9203584 NCBI chr 8:121,854,572...121,857,383
Ensembl chr 8:121,854,679...121,857,383 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:23263861 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,055,336 		JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 IAGP MGI PMID:15121863 NCBI chr11:95,847,989...95,896,770
Ensembl chr11:95,847,989...95,896,766 		JBrowse link
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 IAGP MGI PMID:21727895 NCBI chr 2:109,747,919...109,844,602
Ensembl chr 2:109,747,992...109,844,602 		JBrowse link
G Lgr5 leucine rich repeat containing G protein coupled receptor 5 IAGP MGI PMID:21727895 NCBI chr10:115,286,219...115,423,685
Ensembl chr10:115,286,216...115,423,685 		JBrowse link
G Myo1a myosin IA IAGP MGI PMID:15758024 NCBI chr10:127,539,306...127,556,809
Ensembl chr10:127,541,039...127,556,809 		JBrowse link
G Ndor1 NADPH dependent diflavin oxidoreductase 1 IAGP MGI PMID:22505032 NCBI chr 2:25,134,825...25,145,458
Ensembl chr 2:25,134,833...25,146,034
Ensembl chr 2:25,134,833...25,146,034
Ensembl chr 2:25,134,833...25,146,034 		JBrowse link
G Rab11a RAB11A, member RAS oncogene family IAGP MGI PMID:25063677 NCBI chr 9:64,622,582...64,645,038
Ensembl chr 9:64,622,581...64,645,040 		JBrowse link
G Slc5a6 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 IAGP MGI PMID:23104561 NCBI chr 5:31,193,380...31,206,268
Ensembl chr 5:31,193,380...31,206,268 		JBrowse link
G Smn1 survival motor neuron 1 IAGP MGI PMID:23263861 NCBI chr13:100,259,713...100,274,206
Ensembl chr13:100,261,360...100,274,198 		JBrowse link
G Thra thyroid hormone receptor alpha IAGP MGI PMID:9927422 NCBI chr11:98,631,539...98,659,832
Ensembl chr11:98,631,464...98,659,832 		JBrowse link
G Thrb thyroid hormone receptor beta IAGP MGI PMID:9927422 NCBI chr14:4,429,599...4,810,538
Ensembl chr14:4,431,611...4,809,435 		JBrowse link
G Xbp1 X-box binding protein 1 IAGP MGI PMID:18775308 NCBI chr11:5,470,641...5,475,993
Ensembl chr11:5,470,659...5,475,893 		JBrowse link
fused small intestinal villi term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb3 crumbs family member 3 IAGP MGI PMID:24164893 PMID:26631503 NCBI chr17:57,368,583...57,372,920
Ensembl chr17:57,366,105...57,372,918 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:24557836 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,055,336 		JBrowse link
G Myo5b myosin VB IAGP MGI PMID:26392529 NCBI chr18:74,575,435...74,905,769
Ensembl chr18:74,574,007...74,904,564 		JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 IAGP MGI PMID:24557836 NCBI chr14:56,022,452...56,026,314
Ensembl chr14:56,022,452...56,026,322 		JBrowse link
small intestinal villus atrophy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsd cathepsin D IAGP MGI PMID:26232697 NCBI chr 7:141,929,647...141,941,564
Ensembl chr 7:141,929,648...141,941,775 		JBrowse link
G Cul4a cullin 4A IAGP MGI PMID:18339895 NCBI chr 8:13,155,623...13,197,940
Ensembl chr 8:13,155,621...13,197,940 		JBrowse link
G Edil3 EGF-like repeats and discoidin I-like domains 3 IAGP MGI PMID:26232697 NCBI chr13:88,969,591...89,471,344
Ensembl chr13:88,969,591...89,471,342 		JBrowse link
G Elavl1 ELAV like RNA binding protein 1 IAGP MGI PMID:19884656 NCBI chr 8:4,334,781...4,375,104
Ensembl chr 8:4,335,382...4,375,413 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:19884656 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,055,336 		JBrowse link
G Myo5b myosin VB IAGP MGI PMID:26392529 NCBI chr18:74,575,435...74,905,769
Ensembl chr18:74,574,007...74,904,564 		JBrowse link
G Pcid2 PCI domain containing 2 IAGP MGI PMID:18339895 NCBI chr 8:13,125,476...13,155,343
Ensembl chr 8:13,127,189...13,155,459 		JBrowse link
G Prss8 serine protease 8 (prostasin) IAGP MGI PMID:29617460 NCBI chr 7:127,524,889...127,529,266
Ensembl chr 7:127,524,888...127,529,276 		JBrowse link
G Spint2 serine protease inhibitor, Kunitz type 2 IAGP MGI PMID:29617460 NCBI chr 7:28,955,755...28,981,484
Ensembl chr 7:28,955,748...28,981,337 		JBrowse link
G Tdp2 tyrosyl-DNA phosphodiesterase 2 IAGP MGI PMID:23505375 NCBI chr13:25,015,642...25,026,136
Ensembl chr13:25,015,662...25,026,136 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 17065
    digestive/alimentary phenotype 1925
      abnormal digestive system morphology 1580
        abnormal intestine morphology 749
          abnormal small intestine morphology 276
            abnormal small intestinal villus morphology 104
              abnormal small intestinal microvillus morphology + 18
              abnormal small intestine goblet cell morphology + 9
              blunted small intestinal villi 4
              branched small intestinal villi 3
              clubbed small intestinal villi 1
              decreased small intestinal villus height 22
              decreased small intestinal villus number 5
              decreased small intestinal villus size 20
              fused small intestinal villi 4
              small intestinal villus atrophy 10
paths to the root