Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal fourth pharyngeal arch artery morphology
go back to main search page
Accession:MP:0006354 term browser browse the term
Definition:any structural anomaly of the vessels formed within the fourth pair of branchial arches in embryogenesis
Synonyms:exact_synonym: abnormal fourth PAA;   abnormal fourth aortic arch;   abnormal fourth branchial arch artery morphology
 broad_synonym: Abnormal fetal cardiovascular morphology
 xref: HP:0010948


show annotations for term's descendants           Sort by:
abnormal fourth pharyngeal arch artery morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A IAGP MGI PMID:26806701 NCBI chr 4:133,406,319...133,484,682
Ensembl chr 4:133,406,319...133,484,080 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 IAGP MGI PMID:19855134 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659 		JBrowse link
G Ece1 endothelin converting enzyme 1 IAGP MGI PMID:9649553 NCBI chr 4:137,589,548...137,692,540
Ensembl chr 4:137,589,548...137,692,540 		JBrowse link
G Edn1 endothelin 1 IAGP MGI PMID:7615798 NCBI chr13:42,454,952...42,461,466
Ensembl chr13:42,454,952...42,461,466 		JBrowse link
G Ednra endothelin receptor type A IAGP MGI PMID:9649553 NCBI chr 8:78,389,658...78,451,081
Ensembl chr 8:78,389,660...78,451,093 		JBrowse link
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:20035084 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:12223416 PMID:14623825 PMID:19855134 PMID:20035084 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Foxc1 forkhead box C1 IAGP MGI PMID:10479458 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Foxc2 forkhead box C2 IAGP MGI PMID:9409679 PMID:10479458 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 IAGP MGI PMID:15996652 NCBI chr 1:89,855,684...89,858,898
Ensembl chr 1:89,855,678...89,858,901 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:16332365 PMID:19855134 PMID:26806701 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Hoxa3 homeobox A3 IAGP MGI PMID:14623825 NCBI chr 6:52,146,039...52,190,316
Ensembl chr 6:52,146,042...52,190,316 		JBrowse link
G Kat6a K(lysine) acetyltransferase 6A IAGP MGI PMID:22921202 NCBI chr 8:23,349,458...23,433,275
Ensembl chr 8:23,349,551...23,433,275 		JBrowse link
G Ltbp1 latent transforming growth factor beta binding protein 1 IAGP MGI PMID:17804598 NCBI chr17:75,312,475...75,699,507
Ensembl chr17:75,312,563...75,699,507 		JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:19855134 PMID:20035084 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536 		JBrowse link
G Mrtfb myocardin related transcription factor B IAGP MGI PMID:16204380 NCBI chr16:13,073,913...13,235,393
Ensembl chr16:13,074,345...13,235,393 		JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:34615475 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927 		JBrowse link
G Nrp1 neuropilin 1 IAGP MGI PMID:10518505 NCBI chr 8:129,085,553...129,231,957
Ensembl chr 8:129,085,085...129,229,844 		JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:34615475 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607 		JBrowse link
G Plxnd1 plexin D1 IAGP MGI PMID:15239958 NCBI chr 6:115,931,772...115,972,300
Ensembl chr 6:115,931,772...115,971,966 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607068 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607068 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607068 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Smad7 SMAD family member 7 IAGP MGI PMID:23011393 NCBI chr18:75,500,436...75,529,006
Ensembl chr18:75,500,600...75,529,006 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 PMID:11242110 PMID:12223416 PMID:12858556 PMID:23011393 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Tfap2a transcription factor AP-2, alpha IAGP MGI PMID:14623825 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II IAGP MGI PMID:16332365 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428 		JBrowse link
G Vegfa vascular endothelial growth factor A IAGP MGI PMID:12539040 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295 		JBrowse link
absent fourth pharyngeal arch artery term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 IAGP MGI PMID:19855134 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659 		JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:14623825 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:16914493 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536 		JBrowse link
G Nkx2-5 NK2 homeobox 5 IAGP MGI PMID:15175244 NCBI chr17:27,057,638...27,063,962
Ensembl chr17:27,057,638...27,063,983 		JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:34615475 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607 		JBrowse link
G Ripply3 ripply transcriptional repressor 3 IAGP MGI PMID:21177346 NCBI chr16:94,129,281...94,137,794
Ensembl chr16:94,129,279...94,137,794 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 PMID:15175244 PMID:16914493 PMID:19855134 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Tfap2a transcription factor AP-2, alpha IAGP MGI PMID:14623825 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
fourth pharyngeal arch artery hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:14623825 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:34615475 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927 		JBrowse link
G Nkx2-5 NK2 homeobox 5 IAGP MGI PMID:15175244 NCBI chr17:27,057,638...27,063,962
Ensembl chr17:27,057,638...27,063,983 		JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:34615475 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:12858556 PMID:15175244 PMID:16696966 PMID:19855134 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Tfap2a transcription factor AP-2, alpha IAGP MGI PMID:14623825 PMID:19855134 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16963
    embryo phenotype 2471
      abnormal embryo morphology 1879
        abnormal embryonic tissue morphology 1279
          abnormal pharyngeal arch morphology 217
            abnormal fourth pharyngeal arch morphology 35
              abnormal fourth pharyngeal arch artery morphology 30
                absent fourth pharyngeal arch artery 8
                fourth pharyngeal arch artery hypoplasia 6
Path 2
Term Annotations click to browse term
  mammalian phenotype 16963
    cardiovascular system phenotype 4207
      abnormal cardiovascular system morphology 3313
        abnormal cardiovascular development 958
          abnormal vascular development 663
            abnormal angiogenesis 474
              abnormal artery development 180
                abnormal pharyngeal arch artery morphology 70
                  abnormal fourth pharyngeal arch artery morphology 30
                    absent fourth pharyngeal arch artery 8
                    fourth pharyngeal arch artery hypoplasia 6
paths to the root