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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:small second pharyngeal arch
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Accession:MP:0006344 term browser browse the term
Definition:reduced size of the second branchial arch
Synonyms:exact_synonym: decreased second pharyngeal arch size;   small second branchial arch


show annotations for term's descendants           Sort by:
small second pharyngeal arch term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csnk2a1 casein kinase 2, alpha 1 polypeptide IAGP MGI PMID:17954558 NCBI chr 2:152,068,468...152,123,772
Ensembl chr 2:152,068,759...152,123,772 		JBrowse link
G Edn1 endothelin 1 IAGP MGI PMID:8152482 NCBI chr13:42,454,952...42,461,466
Ensembl chr13:42,454,952...42,461,466 		JBrowse link
G Ednra endothelin receptor type A IAGP MGI PMID:9449664 NCBI chr 8:78,389,658...78,451,081
Ensembl chr 8:78,389,660...78,451,093 		JBrowse link
G Efnb2 ephrin B2 IAGP MGI PMID:11163240 NCBI chr 8:8,667,235...8,711,242
Ensembl chr 8:8,667,434...8,711,242 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:9694798 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Foxa2 forkhead box A2 IAGP MGI PMID:9226455 NCBI chr 2:147,884,797...147,888,889
Ensembl chr 2:147,884,797...147,888,889 		JBrowse link
G Foxo1 forkhead box O1 IAGP MGI PMID:22055502 NCBI chr 3:52,175,758...52,257,530
Ensembl chr 3:52,175,757...52,260,642 		JBrowse link
G Gsc goosecoid homeobox IAGP MGI PMID:9226455 NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589 		JBrowse link
G Hey1 hairy/enhancer-of-split related with YRPW motif 1 IAGP MGI PMID:15680351 NCBI chr 3:8,728,419...8,732,098
Ensembl chr 3:8,728,419...8,732,316 		JBrowse link
G Hey2 hairy/enhancer-of-split related with YRPW motif 2 IAGP MGI PMID:15680351 NCBI chr10:30,708,355...30,718,779
Ensembl chr10:30,708,355...30,718,797 		JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit IAGP MGI PMID:14659802 NCBI chr12:73,948,186...73,994,304
Ensembl chr12:73,948,149...73,994,304 		JBrowse link
G Hoxa1 homeobox A1 IAGP MGI PMID:10529420 NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297 		JBrowse link
G Itgb1 integrin beta 1 (fibronectin receptor beta) IAGP MGI PMID:9553049 NCBI chr 8:129,412,135...129,460,060
Ensembl chr 8:129,412,135...129,459,681 		JBrowse link
G Mapk7 mitogen-activated protein kinase 7 IAGP MGI PMID:14675480 NCBI chr11:61,379,638...61,385,101
Ensembl chr11:61,379,638...61,385,232 		JBrowse link
G Psen1 presenilin 1 IAGP MGI PMID:10557208 NCBI chr12:83,734,926...83,781,869
Ensembl chr12:83,734,926...83,781,973 		JBrowse link
G Psen2 presenilin 2 IAGP MGI PMID:10557208 NCBI chr 1:180,054,569...180,091,030
Ensembl chr 1:180,054,569...180,091,003 		JBrowse link
G Ptch1 patched 1 IAGP MGI PMID:21305688 NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 PMID:16914493 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
second pharyngeal arch hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:20035084 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:20035084 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:26341559 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Med23 mediator complex subunit 23 IAGP MGI PMID:21305688 NCBI chr10:24,745,889...24,789,358
Ensembl chr10:24,745,884...24,789,579 		JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:16914493 PMID:20035084 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:16914493 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 17088
    embryo phenotype 2533
      abnormal embryo morphology 1917
        abnormal embryonic tissue morphology 1299
          abnormal pharyngeal arch morphology 218
            abnormal second pharyngeal arch morphology 49
              small second pharyngeal arch 22
                second pharyngeal arch hypoplasia 6
paths to the root