abnormal external auditory canal morphology - Ontology Report - Rat Genome Database

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

MAMMALIAN PHENOTYPE - ANNOTATIONS	{{ watchLinkText }}
The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.

Term:	abnormal external auditory canal morphology	go back to main search page
Accession:	MP:0006033	browse the term
Definition:	any structural anomaly of the canal that connects the outer and middle ear
Synonyms:	exact_synonym:	abnormal external meatus

show annotations for term's descendants Sort by:
Rat (0) Mouse (20) Human (0) Chinchilla (0) Bonobo (0) Dog (0) Squirrel (0) Pig (0) Green Monkey (0) Naked Mole-rat (0) All
Genes (20)

abnormal external auditory canal morphology

term browser

Symbol

Object Name

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

G

cathepsin L

NCBI chr13:64,509,704...64,518,586
Ensembl chr13:64,507,151...64,518,704

G

distal-less homeobox 5

NCBI chr 6:6,877,801...6,882,068
Ensembl chr 6:6,877,805...6,882,085

G

EYA transcriptional coactivator and phosphatase 1

NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459

G

growth arrest specific 1

NCBI chr13:60,322,219...60,325,349
Ensembl chr13:60,322,219...60,325,179

G

goosecoid homeobox

NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589

G

homeobox A2

NCBI chr 6:52,139,397...52,141,811
Ensembl chr 6:52,139,397...52,141,811

G

iduronidase, alpha-L

NCBI chr 5:108,808,197...108,833,312
Ensembl chr 5:108,808,197...108,832,423

G

microrchidia 2A

NCBI chr11:3,599,132...3,640,477
Ensembl chr11:3,599,191...3,640,477

G

msh homeobox 1

NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927

G

msh homeobox 2

NCBI chr13:53,620,917...53,626,816
Ensembl chr13:53,620,920...53,627,110

G

paired box 8

NCBI chr 2:24,310,563...24,365,611
Ensembl chr 2:24,310,572...24,365,611

G

protein kinase, interferon inducible double stranded RNA dependent activator

NCBI chr 2:76,436,385...76,478,614
Ensembl chr 2:76,460,242...76,478,359

G

phosphoserine phosphatase

NCBI chr 5:129,842,622...129,864,318
Ensembl chr 5:129,842,622...129,864,513

G

stratifin

NCBI chr 4:133,327,867...133,329,479
Ensembl chr 4:133,327,867...133,329,479

G

T-box 1

NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421

G

teashirt zinc finger family member 1

NCBI chr18:84,029,752...84,105,833
Ensembl chr18:84,029,752...84,105,831

absent external auditory canal

term browser

Symbol

Object Name

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

G

endothelin converting enzyme 1

NCBI chr 4:137,589,548...137,692,540
Ensembl chr 4:137,589,548...137,692,540

G

EYA transcriptional coactivator and phosphatase 1

NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459

G

goosecoid homeobox

PMID:7555718 PMID:10512191

NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589

G

microrchidia 2A

NCBI chr11:3,599,132...3,640,477
Ensembl chr11:3,599,191...3,640,477

G

msh homeobox 1

NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927

G

phosphoserine phosphatase

NCBI chr 5:129,842,622...129,864,318
Ensembl chr 5:129,842,622...129,864,513

excessive cerumen

term browser

Symbol

Object Name

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

G

F-box protein 11

NCBI chr17:88,298,287...88,373,473
Ensembl chr17:88,298,287...88,372,719

G

fibroblast growth factor receptor 1

NCBI chr 8:26,008,775...26,065,734
Ensembl chr 8:26,003,670...26,065,734

G

ISL1 transcription factor, LIM/homeodomain

NCBI chr13:116,434,806...116,446,224
Ensembl chr13:116,434,817...116,446,225

external auditory canal stenosis

term browser

Symbol

Object Name

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

G

paired box 8

NCBI chr 2:24,310,563...24,365,611
Ensembl chr 2:24,310,572...24,365,611

Term paths to the root

Path 1
Term	Annotations
mammalian phenotype	16233
craniofacial phenotype	1570
abnormal craniofacial morphology	1570
abnormal outer ear morphology	164
abnormal external auditory canal morphology	20
absent external auditory canal	6
excessive cerumen	3
external auditory canal stenosis	1

paths to the root