Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal cerebral aqueduct morphology
go back to main search page
Accession:MP:0005537 term browser browse the term
Definition:any structural anomaly of the channel in the mesencephalon that connects the third and fourth ventricles
Synonyms:exact_synonym: abnormal Sylvian aqueduct morphology;   abnormal aqueduct of Sylvius;   abnormal aqueduct of midbrain morphology;   abnormal aqueductus mesencephali morphology;   abnormal mesencephalic duct morphology;   abnormal mesencephalic vesicle morphology;   abnormal midbrain cerebral aqueduct morphology
 related_synonym: abnormal cerebral aqueduct of Sylvius morphology


show annotations for term's descendants           Sort by:
abnormal cerebral aqueduct morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 IAGP MGI PMID:23150167 NCBI chr 4:137,047,011...137,085,007
Ensembl chr 4:137,047,007...137,085,031 		JBrowse link
G Ddb1 damage specific DNA binding protein 1 IAGP MGI PMID:17129780 NCBI chr19:10,582,961...10,607,186
Ensembl chr19:10,582,691...10,607,183 		JBrowse link
G Dlg5 discs large MAGUK scaffold protein 5 IAGP MGI PMID:17765678 NCBI chr14:24,184,021...24,295,988
Ensembl chr14:24,184,021...24,295,988 		JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 IAGP MGI PMID:9362461 NCBI chr10:128,403,392...128,425,504
Ensembl chr10:128,403,392...128,425,521 		JBrowse link
G Foxc1 forkhead box C1 IEA MGI NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Hnrnph2 heterogeneous nuclear ribonucleoprotein H2 IAGP MGI PMID:37463454 NCBI chr  X:133,501,928...133,507,809
Ensembl chr  X:133,501,928...133,507,809 		JBrowse link
G Htt huntingtin IAGP MGI PMID:9398841 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878 		JBrowse link
G Hydin HYDIN, axonemal central pair apparatus protein IAGP MGI PMID:4732188 NCBI chr 8:110,993,600...111,336,885
Ensembl chr 8:110,993,609...111,336,885 		JBrowse link
G L1cam L1 cell adhesion molecule IAGP MGI PMID:9580664 PMID:11164829 NCBI chr  X:72,897,384...72,924,843
Ensembl chr  X:72,897,384...72,939,711 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 IAGP MGI PMID:23454480 NCBI chr11:87,744,007...87,754,629
Ensembl chr11:87,744,041...87,754,629 		JBrowse link
G Myh10 myosin heavy chain 10, non-muscle IAGP MGI PMID:20861308 NCBI chr11:68,581,228...68,707,451
Ensembl chr11:68,582,385...68,707,458 		JBrowse link
G Myo9a myosin IXa IAGP MGI PMID:19828736 NCBI chr 9:59,658,128...59,836,149
Ensembl chr 9:59,658,179...59,836,149 		JBrowse link
G Napa N-ethylmaleimide sensitive fusion protein attachment protein alpha IAGP MGI PMID:14575238 NCBI chr 7:15,832,127...15,851,907
Ensembl chr 7:15,832,383...15,851,900 		JBrowse link
G Nek1 NIMA (never in mitosis gene a)-related expressed kinase 1 IAGP MGI PMID:9070925 NCBI chr 8:61,446,184...61,584,383
Ensembl chr 8:61,446,229...61,584,380 		JBrowse link
G Nr1h2 nuclear receptor subfamily 1, group H, member 2 IAGP MGI PMID:12368482 NCBI chr 7:44,199,040...44,204,928
Ensembl chr 7:44,199,040...44,203,375 		JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 IAGP MGI PMID:12368482 NCBI chr 2:91,014,406...91,033,189
Ensembl chr 2:91,014,406...91,033,179 		JBrowse link
G Rhob ras homolog family member B IAGP MGI PMID:19828736 NCBI chr12:8,547,661...8,550,009
Ensembl chr12:8,547,661...8,550,009 		JBrowse link
G Rnd3 Rho family GTPase 3 IAGP MGI PMID:23630292 NCBI chr 2:51,020,451...51,039,123
Ensembl chr 2:51,020,450...51,039,123 		JBrowse link
G Uchl5 ubiquitin carboxyl-terminal esterase L5 IAGP MGI PMID:21048919 NCBI chr 1:143,652,993...143,683,204
Ensembl chr 1:143,653,010...143,683,204 		JBrowse link
G Wasl WASP like actin nucleation promoting factor IAGP MGI PMID:24462670 NCBI chr 6:24,613,809...24,665,185
Ensembl chr 6:24,613,804...24,665,008 		JBrowse link
absent cerebral aqueduct term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2b lysine (K)-specific demethylase 2B IAGP MGI PMID:21220025 NCBI chr 5:123,008,727...123,127,333
Ensembl chr 5:123,008,728...123,127,886 		JBrowse link
cerebral aqueductal stenosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bicd2 BICD cargo adaptor 2 IAGP MGI PMID:24614806 NCBI chr13:49,495,025...49,540,502
Ensembl chr13:49,495,061...49,540,502 		JBrowse link
G Ccdc85c coiled-coil domain containing 85C IAGP MGI PMID:15283996 NCBI chr12:108,169,858...108,244,111
Ensembl chr12:108,169,861...108,241,684 		JBrowse link
G Cdc42 cell division cycle 42 IAGP MGI PMID:23150167 NCBI chr 4:137,047,011...137,085,007
Ensembl chr 4:137,047,007...137,085,031 		JBrowse link
G Cfap206 cilia and flagella associated protein 206 IAGP MGI PMID:32376681 NCBI chr 4:34,688,574...34,730,263
Ensembl chr 4:34,688,559...34,730,206 		JBrowse link
G Katnip katanin interacting protein IAGP MGI PMID:26714646 NCBI chr 7:125,307,027...125,473,967
Ensembl chr 7:125,307,060...125,473,965 		JBrowse link
G Rfx4 regulatory factor X, 4 (influences HLA class II expression) IAGP MGI PMID:12925582 NCBI chr10:84,591,895...84,742,402
Ensembl chr10:84,591,926...84,742,402 		JBrowse link
G Rnd3 Rho family GTPase 3 IAGP MGI PMID:23630292 NCBI chr 2:51,020,451...51,039,123
Ensembl chr 2:51,020,450...51,039,123 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 IAGP MGI PMID:37219662 NCBI chr10:75,732,603...75,757,448
Ensembl chr10:75,732,603...75,757,451 		JBrowse link
G Sptan1 spectrin alpha, non-erythrocytic 1 IAGP MGI PMID:22159418 NCBI chr 2:29,855,572...29,921,463
Ensembl chr 2:29,855,572...29,921,463 		JBrowse link
G Ulk4 unc-51-like kinase 4 (C. elegans) IAGP MGI PMID:27445138 NCBI chr 9:120,793,520...121,115,225
Ensembl chr 9:120,784,417...121,106,263 		JBrowse link
G Wasl WASP like actin nucleation promoting factor IAGP MGI PMID:24462670 NCBI chr 6:24,613,809...24,665,185
Ensembl chr 6:24,613,804...24,665,008 		JBrowse link
enlarged cerebral aqueduct term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dscam DS cell adhesion molecule IAGP MGI PMID:21904980 NCBI chr16:96,388,652...96,971,935
Ensembl chr16:96,392,040...96,971,952 		JBrowse link
G En1 engrailed 1 IAGP MGI PMID:18480159 NCBI chr 1:120,530,246...120,535,719
Ensembl chr 1:120,530,147...120,535,721 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 IAGP MGI PMID:18480159 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Gpr161 G protein-coupled receptor 161 IAGP MGI PMID:34887903 NCBI chr 1:165,108,760...165,154,314
Ensembl chr 1:165,123,358...165,154,314 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:34887903 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Htt huntingtin IAGP MGI PMID:9398841 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878 		JBrowse link
G Npas3 neuronal PAS domain protein 3 IAGP MGI PMID:16190882 NCBI chr12:53,294,874...54,118,956
Ensembl chr12:53,294,940...54,118,958 		JBrowse link
G Otx1 orthodenticle homeobox 1 IAGP MGI PMID:9077465 NCBI chr11:21,944,764...21,954,044
Ensembl chr11:21,944,764...21,952,897 		JBrowse link
G Otx2 orthodenticle homeobox 2 IAGP MGI PMID:9077465 NCBI chr14:48,894,238...48,905,101
Ensembl chr14:48,895,134...48,911,276 		JBrowse link
G Smo smoothened, frizzled class receptor IAGP MGI PMID:18480159 NCBI chr 6:29,735,480...29,761,359
Ensembl chr 6:29,735,502...29,761,364 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16962
    nervous system phenotype 4636
      abnormal nervous system morphology 3668
        abnormal brain morphology 2136
          abnormal brain ventricular system morphology 532
            abnormal cerebral aqueduct morphology 38
              absent cerebral aqueduct 1
              cerebral aqueductal stenosis 11
              enlarged cerebral aqueduct 10
Path 2
Term Annotations click to browse term
  mammalian phenotype 16962
    nervous system phenotype 4636
      abnormal nervous system morphology 3668
        abnormal brain morphology 2136
          abnormal brainstem morphology 299
            abnormal midbrain morphology 205
              abnormal cerebral aqueduct morphology 38
                absent cerebral aqueduct 1
                cerebral aqueductal stenosis 11
                enlarged cerebral aqueduct 10
paths to the root