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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.

Term:darkened coat color
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Accession:MP:0005409 term browser browse the term
Definition:amount and distribution of yellow pigment (phaeomelanin) relative to black or brown pigment (eumelanin) is decreased when compared to wild-type agouti
Synonyms:exact_synonym: darkened coat colour
 narrow_synonym: mahogany coat color;   mahogany coat colour



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darkened coat color term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G a nonagouti IAGP MGI PMID:1896452 PMID:2320577 PMID:5962396 PMID:5968639 PMID:7751596 More... NCBI chr 2:154,792,519...154,892,932
Ensembl chr 2:154,633,322...154,892,932
JBrowse link
G Atrn attractin IAGP MGI PMID:11431694 PMID:11444801 PMID:12560552 PMID:18064672 PMID:18821597 NCBI chr 2:130,734,363...130,872,249
Ensembl chr 2:130,748,415...130,872,253
JBrowse link
G Cbl Casitas B-lineage lymphoma IAGP MGI PMID:16211006 NCBI chr 9:44,054,273...44,145,556
Ensembl chr 9:44,054,273...44,145,346
JBrowse link
G Cux1 cut-like homeobox 1 IAGP MGI PMID:9698457 NCBI chr 5:136,276,989...136,596,429
Ensembl chr 5:136,276,989...136,596,344
JBrowse link
G Drd2 dopamine receptor D2 IAGP MGI PMID:9140068 NCBI chr 9:49,251,703...49,319,468
Ensembl chr 9:49,251,927...49,319,477
JBrowse link
G Edar ectodysplasin-A receptor IAGP MGI PMID:892445 NCBI chr10:58,436,602...58,511,518
Ensembl chr10:58,436,611...58,511,476
JBrowse link
G Fmn1 formin 1 IAGP MGI PMID:2320577 NCBI chr 2:113,158,029...113,547,113
Ensembl chr 2:113,158,081...113,547,112
JBrowse link
G Gna11 guanine nucleotide binding protein, alpha 11 IAGP MGI PMID:12533510 NCBI chr10:81,364,558...81,380,996
Ensembl chr10:81,364,558...81,381,024
JBrowse link
G Gnaq guanine nucleotide binding protein, alpha q polypeptide IAGP MGI PMID:12533510 PMID:26763459 NCBI chr19:16,110,048...16,365,884
Ensembl chr19:16,110,195...16,364,827
JBrowse link
G Hephl1 hephaestin-like 1 IAGP MGI PMID:5911159 NCBI chr 9:14,963,137...15,023,466
Ensembl chr 9:14,963,137...15,023,404
JBrowse link
G Krt14 keratin 14 IAGP MGI PMID:17635993 NCBI chr11:100,093,988...100,098,336
Ensembl chr11:100,093,988...100,098,374
JBrowse link
G Macroh2a1 macroH2A.1 histone IAGP MGI PMID:25312643 NCBI chr13:56,221,435...56,283,439
Ensembl chr13:56,221,432...56,284,174
JBrowse link
G Macroh2a2 macroH2A.2 histone IAGP MGI PMID:25312643 NCBI chr10:61,574,419...61,620,383
Ensembl chr10:61,574,444...61,619,926
JBrowse link
G Mc1r melanocortin 1 receptor IEA MGI NCBI chr 8:124,133,839...124,137,483
Ensembl chr 8:124,133,846...124,137,483
JBrowse link
G Mgrn1 mahogunin, ring finger 1 IAGP MGI PMID:12560552 NCBI chr16:4,703,964...4,756,160
Ensembl chr16:4,704,113...4,756,160
JBrowse link
G Mitf melanogenesis associated transcription factor IAGP MGI PMID:22367038 NCBI chr 6:97,783,966...97,998,321
Ensembl chr 6:97,784,013...97,998,310
JBrowse link
G Oca2 oculocutaneous albinism II IEA MGI NCBI chr 7:55,889,341...56,186,266
Ensembl chr 7:55,889,508...56,186,266
JBrowse link
G Pepd peptidase D IAGP MGI PMID:18821597 PMID:21472842 NCBI chr 7:34,611,832...34,744,131
Ensembl chr 7:34,611,804...34,744,133
JBrowse link
G Rps6 ribosomal protein S6 IAGP MGI PMID:18641651 NCBI chr 4:86,772,336...86,775,604
Ensembl chr 4:86,772,897...86,775,649
JBrowse link
G Sik2 salt inducible kinase 2 IAGP MGI PMID:20819186 NCBI chr 9:50,800,944...50,920,432
Ensembl chr 9:50,804,101...50,920,373
JBrowse link
G Sox10 SRY (sex determining region Y)-box 10 IAGP MGI PMID:3855546 NCBI chr15:79,039,113...79,048,690
Ensembl chr15:79,039,108...79,049,440
JBrowse link
G Sox18 SRY (sex determining region Y)-box 18 IAGP MGI PMID:11094083 PMID:12533510 NCBI chr 2:181,311,630...181,313,433
Ensembl chr 2:181,311,629...181,313,433
JBrowse link
G Tmem79 transmembrane protein 79 IEA MGI NCBI chr 3:88,236,351...88,241,761
Ensembl chr 3:88,235,962...88,243,455
JBrowse link
G Trp53 transformation related protein 53 IAGP MGI PMID:12432262 PMID:18641651 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699
JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 IAGP MGI PMID:17635993 NCBI chr 4:141,171,984...141,195,248
Ensembl chr 4:141,171,965...141,195,241
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16725
    pigmentation phenotype 650
      abnormal coat/hair pigmentation 384
        abnormal agouti pigmentation 41
          darkened coat color 28
Path 2
Term Annotations click to browse term
  mammalian phenotype 16725
    integument phenotype 2671
      abnormal skin adnexa morphology 1492
        abnormal coat/ hair morphology 911
          abnormal coat appearance 841
            abnormal coat/hair pigmentation 384
              abnormal agouti pigmentation 41
                darkened coat color 28
paths to the root