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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal cervical atlas morphology
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Accession:MP:0004607 term browser browse the term
Definition:any structural anomaly of the first (topmost, C1) cervical vertebra which supports the globe of the head
Synonyms:exact_synonym: abnormal C1 vertebra morphology
 broad_synonym: Abnormality of the cervical spine
 xref: HP:0003319


show annotations for term's descendants           Sort by:
abnormal cervical atlas morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmi1 Bmi1 polycomb ring finger oncogene IAGP MGI PMID:11290297 NCBI chr 2:18,681,953...18,691,440
Ensembl chr 2:18,681,829...18,691,440 		JBrowse link
G Cbx2 chromobox 2 IAGP MGI PMID:9043087 NCBI chr11:118,913,845...118,922,101
Ensembl chr11:118,913,788...118,922,096 		JBrowse link
G Ccn2 cellular communication network factor 2 IAGP MGI PMID:12736220 NCBI chr10:24,471,340...24,474,581
Ensembl chr10:24,471,340...24,474,581 		JBrowse link
G Cdx1 caudal type homeobox 1 IAGP MGI PMID:17537796 NCBI chr18:61,151,934...61,169,292
Ensembl chr18:61,151,934...61,169,271 		JBrowse link
G Chtop chromatin target of PRMT1 IEA MGI NCBI chr 3:90,405,846...90,417,400
Ensembl chr 3:90,406,263...90,416,805 		JBrowse link
G Fgfrl1 fibroblast growth factor receptor-like 1 IAGP MGI PMID:19383940 NCBI chr 5:108,842,051...108,854,816
Ensembl chr 5:108,840,248...108,854,790 		JBrowse link
G Foxc1 forkhead box C1 IAGP MGI PMID:5500588 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Fstl1 follistatin-like 1 IAGP MGI PMID:21826198 NCBI chr16:37,597,417...37,656,878
Ensembl chr16:37,597,235...37,656,876 		JBrowse link
G H13 histocompatibility 13 IEA MGI NCBI chr 2:152,511,292...152,550,590
Ensembl chr 2:152,511,381...152,550,590 		JBrowse link
G Hoxa3 homeobox A3 IAGP MGI PMID:9441667 NCBI chr 6:52,146,039...52,190,316
Ensembl chr 6:52,146,042...52,190,316 		JBrowse link
G Hoxb3 homeobox B3 IAGP MGI PMID:7913519 PMID:9441667 NCBI chr11:96,197,927...96,238,756
Ensembl chr11:96,214,152...96,238,756 		JBrowse link
G Hoxd1 homeobox D1 IAGP MGI PMID:11511348 NCBI chr 2:74,593,324...74,595,486
Ensembl chr 2:74,593,324...74,595,486 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:7910549 PMID:7913519 PMID:10688203 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Hoxd4 homeobox D4 IAGP MGI PMID:7750651 NCBI chr 2:74,552,322...74,559,504
Ensembl chr 2:74,542,273...74,559,504 		JBrowse link
G Kat6a K(lysine) acetyltransferase 6A IAGP MGI PMID:19922872 NCBI chr 8:23,349,458...23,433,275
Ensembl chr 8:23,349,551...23,433,275 		JBrowse link
G Kmt2a lysine (K)-specific methyltransferase 2A IAGP MGI PMID:11536426 NCBI chr 9:44,714,652...44,793,492
Ensembl chr 9:44,714,652...44,792,594 		JBrowse link
G Mbtd1 mbt domain containing 1 IAGP MGI PMID:21252303 NCBI chr11:93,776,635...93,837,815
Ensembl chr11:93,776,678...93,837,811 		JBrowse link
G Mllt3 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3 IAGP MGI PMID:12242306 NCBI chr 4:87,688,162...87,951,652
Ensembl chr 4:87,688,162...87,951,601 		JBrowse link
G Nkx3-1 NK3 homeobox 1 IAGP MGI PMID:12204261 NCBI chr14:69,428,141...69,432,107
Ensembl chr14:69,428,087...69,432,111 		JBrowse link
G Nkx3-2 NK3 homeobox 2 IAGP MGI PMID:10572046 PMID:10886375 PMID:12204261 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844 		JBrowse link
G Npr2 natriuretic peptide receptor 2 IAGP MGI PMID:23065701 NCBI chr 4:43,629,015...43,651,437
Ensembl chr 4:43,631,935...43,651,244 		JBrowse link
G Pax1 paired box 1 IAGP MGI PMID:9671740 PMID:16093716 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215 		JBrowse link
G Pcgf2 polycomb group ring finger 2 IAGP MGI PMID:11290297 NCBI chr11:97,579,647...97,593,260
Ensembl chr11:97,579,649...97,591,323 		JBrowse link
G Pds5a PDS5 cohesin associated factor A IAGP MGI PMID:19412548 NCBI chr 5:65,763,062...65,855,579
Ensembl chr 5:65,763,064...65,855,616 		JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic IAGP MGI PMID:19097194 NCBI chr17:83,522,708...83,532,496
Ensembl chr17:83,522,721...83,532,499 		JBrowse link
G Polb polymerase (DNA directed), beta IEA MGI NCBI chr 8:23,118,135...23,143,482
Ensembl chr 8:23,118,142...23,143,451 		JBrowse link
G Prrx1 paired related homeobox 1 IAGP MGI PMID:9729491 NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279 		JBrowse link
G Prrx2 paired related homeobox 2 IAGP MGI PMID:9729491 NCBI chr 2:30,735,076...30,771,263
Ensembl chr 2:30,724,984...30,771,263 		JBrowse link
G Psip1 PC4 and SFRS1 interacting protein 1 IAGP MGI PMID:16980622 NCBI chr 4:83,373,917...83,404,700
Ensembl chr 4:83,373,917...83,404,696 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607067 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607067 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607067 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Ring1 ring finger protein 1 IAGP MGI PMID:11060235 NCBI chr17:34,239,766...34,243,654
Ensembl chr17:34,239,766...34,243,654 		JBrowse link
G Rpl38 ribosomal protein L38 IAGP MGI PMID:8995757 NCBI chr11:114,558,644...114,563,159
Ensembl chr11:114,559,350...114,563,157 		JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) IAGP MGI PMID:9284043 NCBI chr 4:155,238,532...155,307,536
Ensembl chr 4:155,238,532...155,307,049 		JBrowse link
G Sp3 trans-acting transcription factor 3 IAGP MGI PMID:11472836 NCBI chr 2:72,766,774...72,810,790
Ensembl chr 2:72,766,771...72,810,790 		JBrowse link
G T brachyury, T-box transcription factor T IAGP MGI PMID:5906493 NCBI chr17:8,653,255...8,661,328
Ensembl chr17:8,653,255...8,661,328 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242110 PMID:16696966 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Tbx15 T-box 15 IAGP MGI PMID:15652702 PMID:15728667 NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575 		JBrowse link
G Tbx6 T-box 6 IAGP MGI PMID:4073528 NCBI chr 7:126,380,655...126,384,720
Ensembl chr 7:126,380,655...126,384,732 		JBrowse link
G Wnt9a wingless-type MMTV integration site family, member 9A IAGP MGI PMID:16818445 NCBI chr11:59,197,675...59,224,378
Ensembl chr11:59,197,754...59,224,378 		JBrowse link
abnormal arcus anterior morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxb2 homeobox B2 IAGP MGI PMID:9012503 NCBI chr11:96,242,458...96,244,846
Ensembl chr11:96,241,351...96,244,838 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:10688203 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Kmt2a lysine (K)-specific methyltransferase 2A IAGP MGI PMID:16618927 PMID:23934123 NCBI chr 9:44,714,652...44,793,492
Ensembl chr 9:44,714,652...44,792,594 		JBrowse link
G Pcgf6 polycomb group ring finger 6 IAGP MGI PMID:28304275 NCBI chr19:47,022,056...47,039,379
Ensembl chr19:47,022,056...47,039,345 		JBrowse link
G Tasp1 taspase, threonine aspartase 1 IAGP MGI PMID:16951254 NCBI chr 2:139,675,399...139,908,767
Ensembl chr 2:139,675,400...139,908,725 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:16696966 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Tshz1 teashirt zinc finger family member 1 IAGP MGI PMID:17586487 NCBI chr18:84,029,752...84,105,833
Ensembl chr18:84,029,752...84,105,831 		JBrowse link
abnormal ventral tubercle of atlas morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeobox 1 IAGP MGI PMID:14660544 NCBI chr18:61,151,934...61,169,292
Ensembl chr18:61,151,934...61,169,271 		JBrowse link
G Pax1 paired box 1 IAGP MGI PMID:9671740 PMID:16093716 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215 		JBrowse link
G Pgap4 post-GPI attachment to proteins GalNAc transferase 4 IAGP MGI PMID:35151686 NCBI chr 4:49,584,506...49,597,876
Ensembl chr 4:49,584,506...49,597,876 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:14660544 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:8270769 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
absent arcus anterior term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin IAGP MGI PMID:12810603 NCBI chr16:20,551,528...20,561,132
Ensembl chr16:20,551,877...20,561,134 		JBrowse link
G Hoxd1 homeobox D1 IAGP MGI PMID:11511348 NCBI chr 2:74,593,324...74,595,486
Ensembl chr 2:74,593,324...74,595,486 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:10688203 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Nkx3-2 NK3 homeobox 2 IAGP MGI PMID:10572046 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242110 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
absent cervical atlas term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa3 homeobox A3 IAGP MGI PMID:20498049 NCBI chr 6:52,146,039...52,190,316
Ensembl chr 6:52,146,042...52,190,316 		JBrowse link
G Hoxb3 homeobox B3 IAGP MGI PMID:7913519 NCBI chr11:96,197,927...96,238,756
Ensembl chr11:96,214,152...96,238,756 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:7913519 PMID:20498049 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
absent ventral tubercle of atlas term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx3-2 NK3 homeobox 2 IAGP MGI PMID:10886375 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844 		JBrowse link
fusion of atlas and occipital bones term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbx2 chromobox 2 IAGP MGI PMID:9043087 NCBI chr11:118,913,845...118,922,101
Ensembl chr11:118,913,788...118,922,096 		JBrowse link
G Cdx1 caudal type homeobox 1 IAGP MGI PMID:14660544 NCBI chr18:61,151,934...61,169,292
Ensembl chr18:61,151,934...61,169,271 		JBrowse link
G Chtop chromatin target of PRMT1 IEA MGI NCBI chr 3:90,405,846...90,417,400
Ensembl chr 3:90,406,263...90,416,805 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:9694798 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Hoxa3 homeobox A3 IAGP MGI PMID:9441667 NCBI chr 6:52,146,039...52,190,316
Ensembl chr 6:52,146,042...52,190,316 		JBrowse link
G Hoxb3 homeobox B3 IAGP MGI PMID:9441667 NCBI chr11:96,197,927...96,238,756
Ensembl chr11:96,214,152...96,238,756 		JBrowse link
G Hoxd1 homeobox D1 IAGP MGI PMID:11511348 NCBI chr 2:74,593,324...74,595,486
Ensembl chr 2:74,593,324...74,595,486 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:7910549 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Hoxd4 homeobox D4 IAGP MGI PMID:10559481 NCBI chr 2:74,552,322...74,559,504
Ensembl chr 2:74,542,273...74,559,504 		JBrowse link
G Ift140 intraflagellar transport 140 IAGP MGI PMID:24009529 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607067 PMID:9240560 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607067 PMID:9240560 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607067 PMID:8388780 PMID:9240560 PMID:10559481 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Sh3pxd2a SH3 and PX domains 2A IEA MGI NCBI chr19:47,248,613...47,453,053
Ensembl chr19:47,248,613...47,452,840 		JBrowse link
G Tbx18 T-box18 IAGP MGI PMID:15155583 NCBI chr 9:87,584,853...87,613,313
Ensembl chr 9:87,584,853...87,613,313 		JBrowse link
G Tcf15 transcription factor 15 IAGP MGI PMID:8955271 NCBI chr 2:151,984,973...151,991,017
Ensembl chr 2:151,985,481...151,991,017 		JBrowse link
G Tshz1 teashirt zinc finger family member 1 IAGP MGI PMID:17586487 NCBI chr18:84,029,752...84,105,833
Ensembl chr18:84,029,752...84,105,831 		JBrowse link
fusion of atlas and odontoid process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc2 forkhead box C2 IAGP MGI PMID:10364424 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Hoxb3 homeobox B3 IAGP MGI PMID:9441667 NCBI chr11:96,197,927...96,238,756
Ensembl chr11:96,214,152...96,238,756 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:10688203 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Hyal2 hyaluronoglucosaminidase 2 IAGP MGI PMID:18772348 NCBI chr 9:107,445,096...107,449,975
Ensembl chr 9:107,445,144...107,449,978 		JBrowse link
G Pax1 paired box 1 IAGP MGI PMID:9671740 PMID:10364424 PMID:16093716 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215 		JBrowse link
G Phc2 polyhomeotic 2 IAGP MGI PMID:16024804 NCBI chr 4:128,548,448...128,646,674
Ensembl chr 4:128,548,495...128,646,674 		JBrowse link
G Rai1 retinoic acid induced 1 IAGP MGI PMID:15746153 NCBI chr11:59,995,743...60,090,023
Ensembl chr11:59,995,839...60,090,023 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:9240560 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:9240560 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:9240560 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:8270769 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
split cervical atlas term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk10 cyclin dependent kinase 10 IAGP MGI PMID:28886341 NCBI chr 8:123,951,580...123,958,995
Ensembl chr 8:123,951,581...123,958,989 		JBrowse link
G Phc2 polyhomeotic 2 IAGP MGI PMID:16024804 NCBI chr 4:128,548,448...128,646,674
Ensembl chr 4:128,548,495...128,646,674 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:9240560 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:9240560 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:9240560 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 17088
    skeleton phenotype 3397
      abnormal skeleton morphology 3204
        abnormal axial skeleton morphology 1792
          abnormal vertebral column morphology 995
            abnormal vertebrae morphology 670
              abnormal presacral vertebrae morphology 278
                abnormal cervical vertebrae morphology 135
                  abnormal cervical atlas morphology 58
                    abnormal arcus anterior morphology + 10
                    abnormal ventral tubercle of atlas morphology + 6
                    absent cervical atlas 3
                    fusion of atlas and occipital bones 17
                    fusion of atlas and odontoid process 11
                    split cervical atlas 5
paths to the root