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The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories ( For more information about these ontologies, see the MGI Publications Page at

Term:abnormal optic stalk morphology
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Accession:MP:0004268 term browser browse the term
Definition:any structural anomaly of the narrow, proximal portion of the optic vesicle which connects the embryonic eye and forebrain

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abnormal optic stalk morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx1 ALX homeobox 1 IAGP MGI PMID:35127681 NCBI chr10:102,834,564...102,865,501
Ensembl chr10:102,834,568...102,866,076
JBrowse link
G Atp11a ATPase, class VI, type 11A IEA MGI NCBI chr 8:12,807,016...12,918,728
Ensembl chr 8:12,807,014...12,918,728
JBrowse link
G B9d2 B9 protein domain 2 IEA MGI NCBI chr 7:25,380,205...25,385,987
Ensembl chr 7:25,380,205...25,385,983
JBrowse link
G Brd2 bromodomain containing 2 IEA MGI NCBI chr17:34,330,993...34,341,581
Ensembl chr17:34,330,997...34,341,608
JBrowse link
G Casp3 caspase 3 IAGP MGI PMID:8934524 NCBI chr 8:47,070,326...47,092,733
Ensembl chr 8:47,070,326...47,092,724
JBrowse link
G Chtop chromatin target of PRMT1 IEA MGI NCBI chr 3:90,405,846...90,417,400
Ensembl chr 3:90,406,263...90,416,805
JBrowse link
G Col4a2 collagen, type IV, alpha 2 IEA MGI NCBI chr 8:11,362,878...11,499,287
Ensembl chr 8:11,362,805...11,499,287
JBrowse link
G Csnk2a1 casein kinase 2, alpha 1 polypeptide IAGP MGI PMID:17954558 NCBI chr 2:152,068,468...152,123,772
Ensembl chr 2:152,068,759...152,123,772
JBrowse link
G Ehbp1l1 EH domain binding protein 1-like 1 IEA MGI NCBI chr19:5,757,397...5,776,504
Ensembl chr19:5,757,404...5,776,345
JBrowse link
G Gas2l2 growth arrest-specific 2 like 2 IEA MGI NCBI chr11:83,312,461...83,320,347
Ensembl chr11:83,312,728...83,320,281
JBrowse link
G Gja8 gap junction protein, alpha 8 IAGP MGI PMID:15253273 NCBI chr 3:96,820,882...96,833,367
Ensembl chr 3:96,820,882...96,833,336
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 IAGP MGI PMID:6049666 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:16203745 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G H13 histocompatibility 13 IEA MGI NCBI chr 2:152,511,292...152,550,590
Ensembl chr 2:152,511,381...152,550,590
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:16203745 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Hhex hematopoietically expressed homeobox IAGP MGI PMID:10804184 NCBI chr19:37,423,289...37,429,179
Ensembl chr19:37,423,258...37,429,179
JBrowse link
G Mitf melanogenesis associated transcription factor IAGP MGI PMID:4963367 NCBI chr 6:97,783,966...97,998,321
Ensembl chr 6:97,784,013...97,998,310
JBrowse link
G Morc2a microrchidia 2A IEA MGI NCBI chr11:3,599,132...3,640,477
Ensembl chr11:3,599,191...3,640,477
JBrowse link
G Mybphl myosin binding protein H-like IEA MGI NCBI chr 3:108,272,227...108,287,373
Ensembl chr 3:108,272,227...108,287,373
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 IAGP MGI PMID:10706625 NCBI chr10:42,437,959...42,459,721
Ensembl chr10:42,437,959...42,459,628
JBrowse link
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 IAGP MGI PMID:20147377 NCBI chr13:78,337,090...78,346,954
Ensembl chr13:78,337,092...78,347,876
JBrowse link
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 IAGP MGI PMID:20147377 NCBI chr 7:70,001,694...70,016,494
Ensembl chr 7:70,001,692...70,016,483
JBrowse link
G Nsun2 NOL1/NOP2/Sun domain family member 2 IEA MGI NCBI chr13:69,760,135...69,783,899
Ensembl chr13:69,681,865...69,783,899
JBrowse link
G Pax2 paired box 2 IAGP MGI PMID:8943028 PMID:8951055 NCBI chr19:44,735,040...44,826,708
Ensembl chr19:44,744,484...44,826,310
JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 IAGP MGI PMID:16203745 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240
JBrowse link
G Psph phosphoserine phosphatase IEA MGI NCBI chr 5:129,842,622...129,864,318
Ensembl chr 5:129,842,622...129,864,513
JBrowse link
G Rala v-ral simian leukemia viral oncogene A (ras related) IEA MGI NCBI chr13:18,055,160...18,118,802
Ensembl chr13:18,055,156...18,118,824
JBrowse link
G Rpgrip1l Rpgrip1-like IEA MGI NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890
JBrowse link
G Setd5 SET domain containing 5 IEA MGI NCBI chr 6:113,054,326...113,130,393
Ensembl chr 6:113,054,326...113,130,396
JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:8837770 PMID:18694563 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254
JBrowse link
G Six3 sine oculis-related homeobox 3 IAGP MGI PMID:18694563 NCBI chr17:85,921,036...85,933,619
Ensembl chr17:85,921,036...85,936,730
JBrowse link
G Slc12a6 solute carrier family 12, member 6 IAGP MGI PMID:14532115 NCBI chr 2:112,096,659...112,193,508
Ensembl chr 2:112,096,170...112,193,508
JBrowse link
G Smo smoothened, frizzled class receptor IAGP MGI PMID:19854269 NCBI chr 6:29,735,480...29,761,359
Ensembl chr 6:29,735,502...29,761,364
JBrowse link
G Ssr2 signal sequence receptor, beta IEA MGI NCBI chr 3:88,486,915...88,495,727
Ensembl chr 3:88,483,183...88,495,726
JBrowse link
G Tfap2a transcription factor AP-2, alpha IAGP MGI PMID:9918694 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852
JBrowse link
G Traf6 TNF receptor-associated factor 6 IEA MGI NCBI chr 2:101,508,765...101,532,013
Ensembl chr 2:101,508,774...101,532,014
JBrowse link
G Vax1 ventral anterior homeobox 1 IAGP MGI PMID:15905411 NCBI chr19:59,152,912...59,158,829
Ensembl chr19:59,154,619...59,158,488
JBrowse link
G Vax2 ventral anterior homeobox 2 IAGP MGI PMID:15905411 NCBI chr 6:83,688,221...83,715,295
Ensembl chr 6:83,688,246...83,715,295
JBrowse link
G Vsx2 visual system homeobox 2 IAGP MGI PMID:640793 PMID:827941 PMID:13994395 NCBI chr12:84,616,602...84,642,231
Ensembl chr12:84,616,536...84,642,231
JBrowse link

Term paths to the root
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Term Annotations click to browse term
  mammalian phenotype 16725
    vision/eye phenotype 3065
      abnormal eye morphology 2906
        abnormal eye development 548
          abnormal optic stalk morphology 39
paths to the root