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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal primitive node morphology
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Accession:MP:0004066 term browser browse the term
Definition:any structural anomaly of the regional thickening of cells at the rostral tip of the vertebrate primitive streak through which gastrulating cells migrate anteriorly to form tissues in the future head and neck; this region organizes the formation of the three embryonic layers and establishes the longitudinal axis and the polarity of the embryo
Synonyms:exact_synonym: abnormal embryonic node morphology;   abnormal primitive knot morphology;   abnormal prochordal knot morphology
 related_synonym: abnormal Hensen's node morphology;   abnormal Henson's node morphology;   abnormal Spemann's organizer morphology


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abnormal primitive node morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC, WNT signaling pathway regulator IAGP MGI PMID:12645927 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G Bmp4 bone morphogenetic protein 4 IAGP MGI PMID:12361961 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A IAGP MGI PMID:24947469 NCBI chr 5:43,819,715...43,898,317
Ensembl chr 5:43,819,688...43,898,314 		JBrowse link
G Cep20 centrosomal protein 20 IAGP MGI PMID:33686659 NCBI chr16:14,117,105...14,136,093
Ensembl chr16:14,117,108...14,135,269 		JBrowse link
G Cfl1 cofilin 1, non-muscle IAGP MGI PMID:23406901 NCBI chr19:5,540,483...5,544,059
Ensembl chr19:5,540,483...5,545,229 		JBrowse link
G Cimap3 ciliary microtubule associated protein 3 IAGP MGI PMID:20643351 NCBI chr 3:105,904,273...105,921,962
Ensembl chr 3:105,904,273...105,921,962 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 IAGP MGI PMID:12441287 NCBI chr17:15,587,616...15,597,275
Ensembl chr17:15,587,616...15,597,134 		JBrowse link
G Dnaaf2 dynein, axonemal assembly factor 2 IAGP MGI PMID:31107948 NCBI chr12:69,235,861...69,245,203
Ensembl chr12:69,235,861...69,245,203 		JBrowse link
G Dnah11 dynein, axonemal, heavy chain 11 IAGP MGI PMID:10556073 PMID:12859898 NCBI chr12:117,841,717...118,162,778
Ensembl chr12:117,841,717...118,162,778 		JBrowse link
G Dstn destrin IAGP MGI PMID:23406901 NCBI chr 2:143,757,251...143,785,244
Ensembl chr 2:143,757,240...143,785,244 		JBrowse link
G Edil3 EGF-like repeats and discoidin I-like domains 3 IAGP MGI PMID:20573697 PMID:21693517 PMID:26494787 NCBI chr13:88,969,591...89,471,344
Ensembl chr13:88,969,591...89,471,342 		JBrowse link
G Eomes eomesodermin IAGP MGI PMID:18171685 NCBI chr 9:118,307,259...118,315,176
Ensembl chr 9:118,307,280...118,315,200 		JBrowse link
G Foxj1 forkhead box J1 IAGP MGI PMID:22357932 NCBI chr11:116,221,530...116,226,331
Ensembl chr11:116,221,530...116,226,225 		JBrowse link
G Invs inversin IAGP MGI PMID:10549278 NCBI chr 4:48,279,707...48,431,956
Ensembl chr 4:48,279,760...48,431,954 		JBrowse link
G Kif3a kinesin family member 3A IAGP MGI PMID:10220415 NCBI chr11:53,456,531...53,495,075
Ensembl chr11:53,458,206...53,492,794 		JBrowse link
G Lhx1 LIM homeobox protein 1 IAGP MGI PMID:7700351 PMID:26494787 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
G Nodal nodal growth differentiation factor IAGP MGI PMID:11311163 PMID:12091315 PMID:18171685 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
G Noto notochord homeobox IAGP MGI PMID:22357932 NCBI chr 6:85,400,851...85,405,859
Ensembl chr 6:85,400,868...85,405,859 		JBrowse link
G Otx2 orthodenticle homeobox 2 IAGP MGI PMID:7588062 NCBI chr14:48,894,238...48,905,101
Ensembl chr14:48,895,134...48,911,276 		JBrowse link
G Pierce1 piercer of microtubule wall 1 IAGP MGI PMID:27305836 NCBI chr 2:28,352,013...28,356,336
Ensembl chr 2:28,352,013...28,356,344 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel IAGP MGI PMID:12859898 PMID:23357539 NCBI chr 5:104,599,379...104,653,685
Ensembl chr 5:104,607,316...104,653,685 		JBrowse link
G Plpp3 phospholipid phosphatase 3 IAGP MGI PMID:12925589 NCBI chr 4:105,014,544...105,089,964
Ensembl chr 4:105,014,544...105,089,961 		JBrowse link
G Rac1 Rac family small GTPase 1 IAGP MGI PMID:21693517 NCBI chr 5:143,491,236...143,513,786
Ensembl chr 5:143,489,389...143,513,791 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling IAGP MGI PMID:16155214 NCBI chr19:46,385,335...46,477,243
Ensembl chr19:46,385,335...46,477,243 		JBrowse link
G Trim33 tripartite motif-containing 33 IAGP MGI PMID:20573697 NCBI chr 3:103,186,609...103,266,086
Ensembl chr 3:103,186,609...103,266,091 		JBrowse link
G Vangl2 VANGL planar cell polarity 2 IAGP MGI PMID:23406901 NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011 		JBrowse link
G Zic2 zinc finger protein of the cerebellum 2 IAGP MGI PMID:18617531 NCBI chr14:122,712,796...122,717,740
Ensembl chr14:122,712,847...122,717,264 		JBrowse link
G Zic3 zinc finger protein of the cerebellum 3 IAGP MGI PMID:23303524 NCBI chr  X:57,075,988...57,081,990
Ensembl chr  X:57,068,060...57,087,096 		JBrowse link
abnormal embryonic cilium location or orientation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bicc1 BicC family RNA binding protein 1 IAGP MGI PMID:19666828 NCBI chr10:70,758,660...70,995,581
Ensembl chr10:70,758,662...70,995,530 		JBrowse link
G Cfl1 cofilin 1, non-muscle IAGP MGI PMID:23406901 NCBI chr19:5,540,483...5,544,059
Ensembl chr19:5,540,483...5,545,229 		JBrowse link
G Foxj1 forkhead box J1 IAGP MGI PMID:22357932 NCBI chr11:116,221,530...116,226,331
Ensembl chr11:116,221,530...116,226,225 		JBrowse link
G Invs inversin IAGP MGI PMID:10549278 NCBI chr 4:48,279,707...48,431,956
Ensembl chr 4:48,279,760...48,431,954 		JBrowse link
G Noto notochord homeobox IAGP MGI PMID:22357932 NCBI chr 6:85,400,851...85,405,859
Ensembl chr 6:85,400,868...85,405,859 		JBrowse link
G Vangl1 VANGL planar cell polarity 1 IAGP MGI PMID:20562861 NCBI chr 3:102,060,899...102,112,012
Ensembl chr 3:102,060,899...102,112,009 		JBrowse link
G Vangl2 VANGL planar cell polarity 2 IAGP MGI PMID:20562861 PMID:23406901 NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011 		JBrowse link
abnormal motile primary cilium morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atmin ATM interactor IAGP MGI PMID:19235720 NCBI chr 8:117,670,132...117,687,184
Ensembl chr 8:117,670,132...117,687,184 		JBrowse link
G Ccdc40 coiled-coil domain containing 40 IAGP MGI PMID:21131974 NCBI chr11:119,119,328...119,156,074
Ensembl chr11:119,119,398...119,156,064 		JBrowse link
G Cimap3 ciliary microtubule associated protein 3 IAGP MGI PMID:20643351 NCBI chr 3:105,904,273...105,921,962
Ensembl chr 3:105,904,273...105,921,962 		JBrowse link
G Clxn calaxin IAGP MGI PMID:31240264 NCBI chr16:14,724,315...14,786,925
Ensembl chr16:14,724,470...14,799,235 		JBrowse link
G Dnah11 dynein, axonemal, heavy chain 11 IAGP MGI PMID:10549278 NCBI chr12:117,841,717...118,162,778
Ensembl chr12:117,841,717...118,162,778 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 IEA MGI NCBI chr 9:6,928,550...7,177,619
Ensembl chr 9:6,928,503...7,184,446 		JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 IAGP MGI PMID:15371312 NCBI chr17:84,933,903...84,962,996
Ensembl chr17:84,933,924...84,963,016 		JBrowse link
G Ift122 intraflagellar transport 122 IAGP MGI PMID:21209331 NCBI chr 6:115,830,340...115,903,660
Ensembl chr 6:115,830,431...115,903,660 		JBrowse link
G Ift172 intraflagellar transport 172 IAGP MGI PMID:21653639 NCBI chr 5:31,410,623...31,448,458
Ensembl chr 5:31,410,621...31,448,460 		JBrowse link
G Ift56 intraflagellar transport 56 IAGP MGI PMID:25340710 NCBI chr 6:38,358,400...38,404,582
Ensembl chr 6:38,358,404...38,404,582 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 IAGP MGI PMID:19776033 NCBI chr11:87,744,007...87,754,629
Ensembl chr11:87,744,041...87,754,629 		JBrowse link
G Noto notochord homeobox IAGP MGI PMID:22357932 NCBI chr 6:85,400,851...85,405,859
Ensembl chr 6:85,400,868...85,405,859 		JBrowse link
G Rfx3 regulatory factor X, 3 (influences HLA class II expression) IAGP MGI PMID:15121860 NCBI chr19:27,739,121...27,995,287
Ensembl chr19:27,739,121...27,988,566 		JBrowse link
G Tbx6 T-box 6 IAGP MGI PMID:18575602 NCBI chr 7:126,380,655...126,384,720
Ensembl chr 7:126,380,655...126,384,732 		JBrowse link
G Zic3 zinc finger protein of the cerebellum 3 IAGP MGI PMID:23303524 NCBI chr  X:57,075,988...57,081,990
Ensembl chr  X:57,068,060...57,087,096 		JBrowse link
absent embryonic cilia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 2700049A03Rik RIKEN cDNA 2700049A03 gene IAGP MGI PMID:21750036 NCBI chr12:71,183,627...71,356,273
Ensembl chr12:71,183,622...71,290,077 		JBrowse link
G Ankmy2 ankyrin repeat and MYND domain containing 2 IAGP MGI PMID:32702291 NCBI chr12:36,207,123...36,247,290
Ensembl chr12:36,207,113...36,247,290 		JBrowse link
G C2cd3 C2 calcium-dependent domain containing 3 IAGP MGI PMID:19004860 NCBI chr 7:100,021,440...100,119,366
Ensembl chr 7:100,021,440...100,119,359 		JBrowse link
G Cenpj centromere protein J IAGP MGI PMID:24706806 NCBI chr14:56,764,218...56,812,950
Ensembl chr14:56,764,218...56,812,882 		JBrowse link
G Cep20 centrosomal protein 20 IAGP MGI PMID:33686659 NCBI chr16:14,117,105...14,136,093
Ensembl chr16:14,117,108...14,135,269 		JBrowse link
G Cluap1 clusterin associated protein 1 IAGP MGI PMID:23351563 PMID:23742838 NCBI chr16:3,725,058...3,760,163
Ensembl chr16:3,726,665...3,759,011 		JBrowse link
G Clxn calaxin IAGP MGI PMID:31240264 NCBI chr16:14,724,315...14,786,925
Ensembl chr16:14,724,470...14,799,235 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 IAGP MGI PMID:12441287 NCBI chr17:15,587,616...15,597,275
Ensembl chr17:15,587,616...15,597,134 		JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 IAGP MGI PMID:15371312 NCBI chr17:84,933,903...84,962,996
Ensembl chr17:84,933,924...84,963,016 		JBrowse link
G Ift122 intraflagellar transport 122 IAGP MGI PMID:19000668 PMID:21209331 NCBI chr 6:115,830,340...115,903,660
Ensembl chr 6:115,830,431...115,903,660 		JBrowse link
G Ift172 intraflagellar transport 172 IAGP MGI PMID:14603322 NCBI chr 5:31,410,623...31,448,458
Ensembl chr 5:31,410,621...31,448,460 		JBrowse link
G Ift46 intraflagellar transport 46 IAGP MGI PMID:25722189 NCBI chr 9:44,683,074...44,704,011
Ensembl chr 9:44,679,205...44,704,744 		JBrowse link
G Ift57 intraflagellar transport 57 IAGP MGI PMID:17027958 NCBI chr16:49,519,657...49,585,489
Ensembl chr16:49,519,596...49,585,489 		JBrowse link
G Ift88 intraflagellar transport 88 IAGP MGI PMID:10804177 PMID:32702291 NCBI chr14:57,661,519...57,755,393
Ensembl chr14:57,661,519...57,755,393 		JBrowse link
G Kif3a kinesin family member 3A IAGP MGI PMID:10220415 PMID:10330409 PMID:21209331 NCBI chr11:53,456,531...53,495,075
Ensembl chr11:53,458,206...53,492,794 		JBrowse link
G Kif3b kinesin family member 3B IAGP MGI PMID:9865700 NCBI chr 2:153,132,028...153,175,310
Ensembl chr 2:153,133,333...153,175,310 		JBrowse link
G Mbd4 methyl-CpG binding domain protein 4 IAGP MGI PMID:19000668 NCBI chr 6:115,817,658...115,830,361
Ensembl chr 6:115,817,658...115,830,332 		JBrowse link
G Ppp1r35 protein phosphatase 1, regulatory subunit 35 IAGP MGI PMID:32628936 NCBI chr 5:137,777,138...137,778,372
Ensembl chr 5:137,777,111...137,778,372 		JBrowse link
G Tctn1 tectonic family member 1 IAGP MGI PMID:21725307 NCBI chr 5:122,377,558...122,402,557
Ensembl chr 5:122,375,911...122,402,523 		JBrowse link
G Tctn2 tectonic family member 2 IAGP MGI PMID:21725307 NCBI chr 5:124,736,812...124,765,803
Ensembl chr 5:124,736,812...124,765,803 		JBrowse link
G Tmem67 transmembrane protein 67 IAGP MGI PMID:23283079 NCBI chr 4:12,039,355...12,090,020
Ensembl chr 4:12,039,363...12,090,020 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 IAGP MGI PMID:21945076 NCBI chr 1:91,422,311...91,457,029
Ensembl chr 1:91,422,369...91,457,029 		JBrowse link
G Ttbk2 tau tubulin kinase 2 IAGP MGI PMID:30532139 NCBI chr 2:120,563,297...120,681,111
Ensembl chr 2:120,563,297...120,681,085 		JBrowse link
G Wdr35 WD repeat domain 35 IAGP MGI PMID:21473986 NCBI chr12:9,023,897...9,078,848
Ensembl chr12:9,023,892...9,078,847 		JBrowse link
absent primitive node term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 2310011J03Rik RIKEN cDNA 2310011J03 gene IEA MGI NCBI chr10:80,154,089...80,156,382
Ensembl chr10:80,154,088...80,156,371 		JBrowse link
G Actr8 ARP8 actin-related protein 8 IEA MGI NCBI chr14:29,700,294...29,717,409
Ensembl chr14:29,700,294...29,728,311 		JBrowse link
G Amn amnionless IAGP MGI PMID:8660894 PMID:9851841 NCBI chr12:111,237,530...111,242,860
Ensembl chr12:111,237,529...111,242,860 		JBrowse link
G Ap2s1 adaptor-related protein complex 2, sigma 1 subunit IEA MGI NCBI chr 7:16,472,369...16,483,215
Ensembl chr 7:16,472,335...16,483,219 		JBrowse link
G Bcs1l BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone IEA MGI NCBI chr 1:74,627,448...74,631,602
Ensembl chr 1:74,627,448...74,631,602 		JBrowse link
G Borcs6 BLOC-1 related complex subunit 6 IEA MGI NCBI chr11:68,950,601...68,952,402
Ensembl chr11:68,950,543...68,952,404 		JBrowse link
G Ccdc59 coiled-coil domain containing 59 IEA MGI NCBI chr10:105,677,340...105,683,371
Ensembl chr10:105,676,928...105,683,694 		JBrowse link
G Cenpo centromere protein O IEA MGI NCBI chr12:4,243,548...4,284,255
Ensembl chr12:4,246,004...4,284,294 		JBrowse link
G Clpx caseinolytic mitochondrial matrix peptidase chaperone subunit IEA MGI NCBI chr 9:65,201,533...65,237,940
Ensembl chr 9:65,201,542...65,237,940 		JBrowse link
G Ddx59 DEAD box helicase 59 IEA MGI NCBI chr 1:136,343,009...136,384,019
Ensembl chr 1:136,343,009...136,367,896 		JBrowse link
G Dolk dolichol kinase IEA MGI NCBI chr 2:30,174,241...30,176,366
Ensembl chr 2:30,174,243...30,176,346 		JBrowse link
G Edil3 EGF-like repeats and discoidin I-like domains 3 IAGP MGI PMID:22669107 NCBI chr13:88,969,591...89,471,344
Ensembl chr13:88,969,591...89,471,342 		JBrowse link
G Eipr1 EARP complex and GARP complex interacting protein 1 IEA MGI NCBI chr12:28,801,802...28,917,493
Ensembl chr12:28,801,802...28,919,864 		JBrowse link
G Elof1 ELF1 homolog, elongation factor 1 IAGP MGI PMID:31276560 NCBI chr 9:22,024,282...22,028,491
Ensembl chr 9:22,024,285...22,028,468 		JBrowse link
G Eomes eomesodermin IAGP MGI PMID:10716450 NCBI chr 9:118,307,259...118,315,176
Ensembl chr 9:118,307,280...118,315,200 		JBrowse link
G Fastkd5 FAST kinase domains 5 IEA MGI NCBI chr 2:130,455,766...130,471,922
Ensembl chr 2:130,455,760...130,471,947 		JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:10421635 PMID:17507393 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Foxa2 forkhead box A2 IAGP MGI PMID:8069909 PMID:8069910 PMID:11291865 NCBI chr 2:147,884,797...147,888,889
Ensembl chr 2:147,884,797...147,888,889 		JBrowse link
G Foxh1 forkhead box H1 IAGP MGI PMID:11358869 NCBI chr15:76,552,029...76,554,286
Ensembl chr15:76,552,425...76,554,148 		JBrowse link
G Glrx3 glutaredoxin 3 IEA MGI NCBI chr 7:137,039,302...137,071,360
Ensembl chr 7:137,039,343...137,070,323 		JBrowse link
G Hars2 histidyl-tRNA synthetase 2 IEA MGI NCBI chr18:36,916,257...36,925,615
Ensembl chr18:36,916,061...36,925,615 		JBrowse link
G Hlcs holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase) IEA MGI NCBI chr16:93,930,054...94,116,098
Ensembl chr16:93,929,741...94,114,430 		JBrowse link
G Htt huntingtin IAGP MGI PMID:7618107 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878 		JBrowse link
G Ipo11 importin 11 IEA MGI NCBI chr13:106,930,947...107,073,466
Ensembl chr13:106,930,947...107,073,466 		JBrowse link
G Isca1 iron-sulfur cluster assembly 1 IEA MGI NCBI chr13:59,903,229...59,917,603
Ensembl chr13:59,903,223...59,917,624 		JBrowse link
G Lefty2 left-right determination factor 2 IAGP MGI PMID:10518210 NCBI chr 1:180,720,673...180,726,672
Ensembl chr 1:180,720,673...180,726,668 		JBrowse link
G Mars2 methionine-tRNA synthetase 2 (mitochondrial) IEA MGI NCBI chr 1:55,276,336...55,279,217
Ensembl chr 1:55,276,336...55,287,629 		JBrowse link
G Mixl1 Mix paired-like homeobox IAGP MGI PMID:12117810 NCBI chr 1:180,520,608...180,524,599
Ensembl chr 1:180,520,608...180,524,599 		JBrowse link
G Mob4 MOB family member 4, phocein IEA MGI NCBI chr 1:55,170,404...55,194,058
Ensembl chr 1:55,170,390...55,194,058 		JBrowse link
G Mrpl22 mitochondrial ribosomal protein L22 IEA MGI NCBI chr11:58,060,850...58,070,406
Ensembl chr11:58,062,487...58,070,391 		JBrowse link
G Mrpl3 mitochondrial ribosomal protein L3 IEA MGI NCBI chr 9:104,930,394...104,954,665
Ensembl chr 9:104,930,438...104,957,087 		JBrowse link
G Mrpl44 mitochondrial ribosomal protein L44 IEA MGI NCBI chr 1:79,753,735...79,759,162
Ensembl chr 1:79,753,735...79,759,162 		JBrowse link
G Mrps18c mitochondrial ribosomal protein S18C IEA MGI NCBI chr 5:100,946,625...100,952,333
Ensembl chr 5:100,946,493...100,952,337 		JBrowse link
G Mtx2 metaxin 2 IEA MGI NCBI chr 2:74,656,156...74,707,092
Ensembl chr 2:74,656,147...74,708,775 		JBrowse link
G Nars2 asparaginyl-tRNA synthetase 2 (mitochondrial)(putative) IEA MGI NCBI chr 7:96,600,698...96,725,606
Ensembl chr 7:96,600,712...96,713,965 		JBrowse link
G Ndufa9 NADH:ubiquinone oxidoreductase subunit A9 IEA MGI NCBI chr 6:126,798,826...126,826,107
Ensembl chr 6:126,798,684...126,826,099 		JBrowse link
G Ndufs8 NADH:ubiquinone oxidoreductase core subunit S8 IEA MGI NCBI chr19:3,958,863...3,962,774
Ensembl chr19:3,958,863...3,962,774 		JBrowse link
G Nodal nodal growth differentiation factor IAGP MGI PMID:11311163 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
G Nsd1 nuclear receptor-binding SET-domain protein 1 IAGP MGI PMID:12805229 NCBI chr13:55,357,595...55,466,138
Ensembl chr13:55,357,595...55,466,138 		JBrowse link
G Pofut2 protein O-fucosyltransferase 2 IAGP MGI PMID:20637190 NCBI chr10:77,095,056...77,105,420
Ensembl chr10:77,095,052...77,105,409 		JBrowse link
G Rab11a RAB11A, member RAS oncogene family IEA MGI NCBI chr 9:64,622,582...64,645,038
Ensembl chr 9:64,622,581...64,645,040 		JBrowse link
G Rps6ka6 ribosomal protein S6 kinase polypeptide 6 IEA MGI NCBI chr  X:110,297,534...110,447,794
Ensembl chr  X:110,297,889...110,447,656 		JBrowse link
G Sall4 spalt like transcription factor 4 IAGP MGI PMID:18781635 NCBI chr 2:168,590,252...168,609,121
Ensembl chr 2:168,590,252...168,609,863 		JBrowse link
G Sdhaf2 succinate dehydrogenase complex assembly factor 2 IEA MGI NCBI chr19:10,477,876...10,502,573
Ensembl chr19:10,477,898...10,503,506 		JBrowse link
G Ska2 spindle and kinetochore associated complex subunit 2 IEA MGI NCBI chr11:87,000,087...87,013,800
Ensembl chr11:87,000,060...87,015,461 		JBrowse link
G Smad2 SMAD family member 2 IAGP MGI PMID:9529255 NCBI chr18:76,369,898...76,444,819
Ensembl chr18:76,374,651...76,444,034 		JBrowse link
G Sptssa serine palmitoyltransferase, small subunit A IEA MGI NCBI chr12:54,692,159...54,703,357
Ensembl chr12:54,692,177...54,703,358 		JBrowse link
G Strn3 striatin, calmodulin binding protein 3 IEA MGI NCBI chr12:51,655,324...51,743,942
Ensembl chr12:51,656,415...51,738,680 		JBrowse link
G T brachyury, T-box transcription factor T IAGP MGI PMID:8293872 NCBI chr17:8,653,255...8,661,328
Ensembl chr17:8,653,255...8,661,328 		JBrowse link
G Taf13 TATA-box binding protein associated factor 13 IAGP MGI PMID:38593904 NCBI chr 3:108,479,015...108,489,384
Ensembl chr 3:108,479,014...108,490,538 		JBrowse link
G Timm22 translocase of inner mitochondrial membrane 22 IEA MGI NCBI chr11:76,297,751...76,307,139
Ensembl chr11:76,297,778...76,307,118 		JBrowse link
G Tomm70a translocase of outer mitochondrial membrane 70A IEA MGI NCBI chr16:56,942,077...56,974,893
Ensembl chr16:56,942,066...56,977,068 		JBrowse link
G Tpk1 thiamine pyrophosphokinase IEA MGI NCBI chr 6:43,316,510...43,644,726
Ensembl chr 6:43,321,935...43,643,212 		JBrowse link
G Trit1 tRNA isopentenyltransferase 1 IEA MGI NCBI chr 4:122,910,342...122,948,742
Ensembl chr 4:122,910,390...122,948,742 		JBrowse link
G Ube2m ubiquitin-conjugating enzyme E2M IEA MGI NCBI chr 7:12,769,047...12,772,202
Ensembl chr 7:12,769,047...12,772,202 		JBrowse link
G Washc4 WASH complex subunit 4 IEA MGI NCBI chr10:83,379,073...83,432,350
Ensembl chr10:83,379,616...83,432,337 		JBrowse link
G Wdr25 WD repeat domain 25 IEA MGI NCBI chr12:108,860,155...108,994,380
Ensembl chr12:108,859,557...108,994,378 		JBrowse link
G Wnt3 wingless-type MMTV integration site family, member 3 IAGP MGI PMID:10431240 NCBI chr11:103,665,000...103,708,854
Ensembl chr11:103,664,976...103,708,783 		JBrowse link
G Ylpm1 YLP motif containing 1 IEA MGI NCBI chr12:85,042,977...85,130,501
Ensembl chr12:85,043,095...85,117,289 		JBrowse link
G Yy1 YY1 transcription factor IAGP MGI PMID:22669107 NCBI chr12:108,758,841...108,786,074
Ensembl chr12:108,758,899...108,786,074 		JBrowse link
G Zic3 zinc finger protein of the cerebellum 3 IAGP MGI PMID:16397896 NCBI chr  X:57,075,988...57,081,990
Ensembl chr  X:57,068,060...57,087,096 		JBrowse link
decreased embryonic cilium length term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atmin ATM interactor IAGP MGI PMID:25294941 NCBI chr 8:117,670,132...117,687,184
Ensembl chr 8:117,670,132...117,687,184 		JBrowse link
G B9d1 B9 protein domain 1 IAGP MGI PMID:21763481 NCBI chr11:61,395,970...61,403,757
Ensembl chr11:61,395,970...61,403,757 		JBrowse link
G Cluap1 clusterin associated protein 1 IAGP MGI PMID:23742838 NCBI chr16:3,725,058...3,760,163
Ensembl chr16:3,726,665...3,759,011 		JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 IAGP MGI PMID:15371312 NCBI chr17:84,933,903...84,962,996
Ensembl chr17:84,933,924...84,963,016 		JBrowse link
G Dynll1 dynein light chain LC8-type 1 IAGP MGI PMID:25294941 NCBI chr 5:115,435,129...115,438,995
Ensembl chr 5:115,435,169...115,439,058 		JBrowse link
G Foxj1 forkhead box J1 IAGP MGI PMID:22357932 NCBI chr11:116,221,530...116,226,331
Ensembl chr11:116,221,530...116,226,225 		JBrowse link
G Ift122 intraflagellar transport 122 IAGP MGI PMID:19000668 NCBI chr 6:115,830,340...115,903,660
Ensembl chr 6:115,830,431...115,903,660 		JBrowse link
G Intu inturned planar cell polarity protein IAGP MGI PMID:20067783 PMID:25774014 NCBI chr 3:40,585,559...40,659,206
Ensembl chr 3:40,585,435...40,659,204 		JBrowse link
G Lztfl1 leucine zipper transcription factor-like 1 IAGP MGI PMID:30423168 NCBI chr 9:123,523,469...123,546,690
Ensembl chr 9:123,523,481...123,546,762 		JBrowse link
G Mbd4 methyl-CpG binding domain protein 4 IAGP MGI PMID:19000668 NCBI chr 6:115,817,658...115,830,361
Ensembl chr 6:115,817,658...115,830,332 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 IAGP MGI PMID:21045211 NCBI chr11:87,744,007...87,754,629
Ensembl chr11:87,744,041...87,754,629 		JBrowse link
G Noto notochord homeobox IAGP MGI PMID:22357932 NCBI chr 6:85,400,851...85,405,859
Ensembl chr 6:85,400,868...85,405,859 		JBrowse link
G Odf2 outer dense fiber of sperm tails 2 IAGP MGI PMID:22265411 NCBI chr 2:29,779,026...29,821,758
Ensembl chr 2:29,779,233...29,821,758 		JBrowse link
G Tbx6 T-box 6 IAGP MGI PMID:18575602 NCBI chr 7:126,380,655...126,384,720
Ensembl chr 7:126,380,655...126,384,732 		JBrowse link
decreased embryonic cilium number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B9d1 B9 protein domain 1 IAGP MGI PMID:21763481 NCBI chr11:61,395,970...61,403,757
Ensembl chr11:61,395,970...61,403,757 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A IAGP MGI PMID:24947469 NCBI chr 5:43,819,715...43,898,317
Ensembl chr 5:43,819,688...43,898,314 		JBrowse link
G Clxn calaxin IAGP MGI PMID:31240264 NCBI chr16:14,724,315...14,786,925
Ensembl chr16:14,724,470...14,799,235 		JBrowse link
G Dnaaf2 dynein, axonemal assembly factor 2 IAGP MGI PMID:31107948 NCBI chr12:69,235,861...69,245,203
Ensembl chr12:69,235,861...69,245,203 		JBrowse link
G Intu inturned planar cell polarity protein IAGP MGI PMID:25774014 NCBI chr 3:40,585,559...40,659,206
Ensembl chr 3:40,585,435...40,659,204 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 IAGP MGI PMID:21045211 NCBI chr11:87,744,007...87,754,629
Ensembl chr11:87,744,041...87,754,629 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16965
    embryo phenotype 2477
      abnormal embryo morphology 1886
        abnormal embryonic tissue morphology 1282
          abnormal primitive streak morphology 206
            abnormal primitive node morphology 120
              abnormal motile primary cilium morphology + 48
              absent primitive node 61
paths to the root