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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal jejunum morphology
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Accession:MP:0004002 term browser browse the term
Definition:any structural anomaly of the portion of the small intestine that extends from the duodenum to the ileum


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abnormal jejunum morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcam basal cell adhesion molecule IAGP MGI PMID:18032551 NCBI chr 7:19,490,063...19,504,457
Ensembl chr 7:19,490,056...19,504,941 		JBrowse link
G Cadps2 Ca2+-dependent activator protein for secretion 2 IEA MGI NCBI chr 6:23,262,765...23,840,662
Ensembl chr 6:23,262,772...23,839,420 		JBrowse link
G Cdhr2 cadherin-related family member 2 IAGP MGI PMID:30403560 NCBI chr13:54,849,276...54,884,475
Ensembl chr13:54,849,274...54,884,475 		JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A IAGP MGI PMID:9925645 NCBI chr17:29,309,953...29,319,696
Ensembl chr17:29,309,950...29,319,701 		JBrowse link
G Cdkn1c cyclin dependent kinase inhibitor 1C IAGP MGI PMID:9144284 PMID:9925645 NCBI chr 7:143,012,076...143,014,735
Ensembl chr 7:143,012,076...143,014,787 		JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:7560099 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
G Cldn15 claudin 15 IAGP MGI PMID:18242218 NCBI chr 5:136,996,723...137,004,699
Ensembl chr 5:136,995,470...137,004,712 		JBrowse link
G E2f3 E2F transcription factor 3 IEA MGI NCBI chr13:30,090,558...30,171,172
Ensembl chr13:30,090,558...30,170,046 		JBrowse link
G Epcam epithelial cell adhesion molecule IAGP MGI PMID:24337010 NCBI chr17:87,943,407...87,958,555
Ensembl chr17:87,943,407...87,958,557 		JBrowse link
G Fam227b family with sequence similarity 227, member B IEA MGI NCBI chr 2:125,825,403...125,994,048
Ensembl chr 2:125,825,403...125,993,924 		JBrowse link
G Fdx2 ferredoxin 2 IEA MGI NCBI chr 9:20,978,808...20,984,827
Ensembl chr 9:20,978,816...20,984,910 		JBrowse link
G Foxl1 forkhead box L1 IAGP MGI PMID:9203584 NCBI chr 8:121,854,572...121,857,383
Ensembl chr 8:121,854,679...121,857,383 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:17553423 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Lipa lysosomal acid lipase A IAGP MGI PMID:11290820 NCBI chr19:34,469,716...34,504,874
Ensembl chr19:34,469,718...34,504,874 		JBrowse link
G Myl9 myosin, light polypeptide 9, regulatory IAGP MGI PMID:33424621 NCBI chr 2:156,617,373...156,623,578
Ensembl chr 2:156,617,340...156,623,578 		JBrowse link
G Nkx2-3 NK2 homeobox 3 IAGP MGI PMID:10207146 PMID:10926756 NCBI chr19:43,600,764...43,604,331
Ensembl chr19:43,600,764...43,604,331 		JBrowse link
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 IEA MGI NCBI chr 1:131,838,196...131,864,059
Ensembl chr 1:131,838,272...131,864,059 		JBrowse link
G Ppp1r12a protein phosphatase 1, regulatory subunit 12A IAGP MGI PMID:23499953 NCBI chr10:107,997,913...108,115,846
Ensembl chr10:107,998,054...108,120,336 		JBrowse link
G Pramel12 PRAME like 12 IEA MGI NCBI chr 4:143,137,457...143,147,661
Ensembl chr 4:143,138,996...143,147,661 		JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:19168705 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560 		JBrowse link
G Ptk6 PTK6 protein tyrosine kinase 6 IAGP MGI PMID:16782882 NCBI chr 2:180,836,917...180,845,408
Ensembl chr 2:180,835,514...180,844,582 		JBrowse link
G Ret ret proto-oncogene IAGP MGI PMID:17553423 NCBI chr 6:118,128,709...118,174,705
Ensembl chr 6:118,128,706...118,174,679 		JBrowse link
G Slc12a5 solute carrier family 12, member 5 IEA MGI NCBI chr 2:164,802,766...164,841,651
Ensembl chr 2:164,802,722...164,841,651 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 IAGP MGI PMID:21518954 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526 		JBrowse link
G Smtn smoothelin IAGP MGI PMID:16285958 NCBI chr11:3,467,522...3,489,337
Ensembl chr11:3,467,521...3,490,612 		JBrowse link
G Tmem248 transmembrane protein 248 IEA MGI NCBI chr 5:130,248,585...130,272,606
Ensembl chr 5:130,245,922...130,272,606 		JBrowse link
G Trim71 tripartite motif-containing 71 IEA MGI NCBI chr 9:114,340,336...114,393,437
Ensembl chr 9:114,336,201...114,393,437 		JBrowse link
G Ybx3 Y box protein 3 IEA MGI NCBI chr 6:131,341,821...131,365,413
Ensembl chr 6:131,341,818...131,365,439 		JBrowse link
abnormal jejunum crypts of Lieberkuhn morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1m2 adaptor protein complex AP-1, mu 2 subunit IAGP MGI PMID:23684748 NCBI chr 9:21,206,753...21,223,617
Ensembl chr 9:21,205,571...21,223,633 		JBrowse link
G Bmi1 Bmi1 polycomb ring finger oncogene IAGP MGI PMID:18536716 NCBI chr 2:18,681,953...18,691,440
Ensembl chr 2:18,681,829...18,691,440 		JBrowse link
G Csnk1a1 casein kinase 1, alpha 1 IAGP MGI PMID:32728212 NCBI chr18:61,687,307...61,723,391
Ensembl chr18:61,688,345...61,723,132 		JBrowse link
G Gpx1 glutathione peroxidase 1 IAGP MGI PMID:10915653 NCBI chr 9:108,216,279...108,217,541
Ensembl chr 9:108,216,102...108,217,542 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:18536716 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Nkx2-3 NK2 homeobox 3 IAGP MGI PMID:10926756 NCBI chr19:43,600,764...43,604,331
Ensembl chr19:43,600,764...43,604,331 		JBrowse link
G Trp53 transformation related protein 53 IAGP MGI PMID:32728212 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
absent jejunum term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1c cyclin dependent kinase inhibitor 1C IAGP MGI PMID:9136926 NCBI chr 7:143,012,076...143,014,735
Ensembl chr 7:143,012,076...143,014,787 		JBrowse link
distended jejunum term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dennd5b DENN domain containing 5B IAGP MGI PMID:30837651 NCBI chr 6:148,889,566...149,003,178
Ensembl chr 6:148,889,569...149,003,178 		JBrowse link
G Id2 inhibitor of DNA binding 2 IAGP MGI PMID:10067894 NCBI chr12:25,143,798...25,146,091
Ensembl chr12:25,143,798...25,147,139 		JBrowse link
G Myl9 myosin, light polypeptide 9, regulatory IAGP MGI PMID:33424621 NCBI chr 2:156,617,373...156,623,578
Ensembl chr 2:156,617,340...156,623,578 		JBrowse link
G Mylk myosin, light polypeptide kinase IAGP MGI PMID:18586037 NCBI chr16:34,565,569...34,822,806
Ensembl chr16:34,565,580...34,822,790 		JBrowse link
G Slc29a3 solute carrier family 29 (nucleoside transporters), member 3 IEA MGI NCBI chr10:60,547,851...60,588,624
Ensembl chr10:60,547,851...60,588,573 		JBrowse link
G Tagln transgelin IAGP MGI PMID:18586037 NCBI chr 9:45,840,926...45,847,356
Ensembl chr 9:45,840,917...45,847,356 		JBrowse link
G Tmem248 transmembrane protein 248 IEA MGI NCBI chr 5:130,248,585...130,272,606
Ensembl chr 5:130,245,922...130,272,606 		JBrowse link
jejunum polyps term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC, WNT signaling pathway regulator IAGP MGI PMID:25578479 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G Lmna lamin A IAGP MGI PMID:25578479 NCBI chr 3:88,388,455...88,413,842
Ensembl chr 3:88,387,454...88,417,263 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16963
    digestive/alimentary phenotype 1913
      abnormal digestive system morphology 1569
        abnormal intestine morphology 684
          abnormal small intestine morphology 273
            abnormal jejunum morphology 41
              abnormal jejunum crypts of Lieberkuhn morphology 7
              absent jejunum 1
              distended jejunum 7
              jejunum atresia 0
              jejunum polyps 2
paths to the root