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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal embryonic-extraembryonic boundary morphology
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Accession:MP:0003890 term browser browse the term
Definition:any structural anomaly in the delineating tissue and the segregation between the embryo proper and extraembryonic tissues


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abnormal embryonic-extraembryonic boundary morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arc activity regulated cytoskeletal-associated protein IAGP MGI PMID:10727859 NCBI chr15:74,540,930...74,544,419
Ensembl chr15:74,540,932...74,544,419 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A IAGP MGI PMID:8543149 NCBI chr14:34,133,018...34,225,335
Ensembl chr14:34,132,691...34,225,298 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 IAGP MGI PMID:10772805 NCBI chr 1:59,802,721...59,917,240
Ensembl chr 1:59,802,559...59,918,173 		JBrowse link
G Brca1 breast cancer 1, early onset IAGP MGI PMID:8674108 NCBI chr11:101,379,587...101,442,808
Ensembl chr11:101,379,590...101,442,781 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist IAGP MGI PMID:12431380 NCBI chr 4:82,799,988...82,803,388
Ensembl chr 4:82,799,988...82,803,385 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:21479780 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Gclc glutamate-cysteine ligase, catalytic subunit IAGP MGI PMID:10805773 NCBI chr 9:77,661,817...77,701,771
Ensembl chr 9:77,661,817...77,701,767 		JBrowse link
G Hsd17b12 hydroxysteroid (17-beta) dehydrogenase 12 IAGP MGI PMID:20130115 NCBI chr 2:93,863,042...93,988,254
Ensembl chr 2:93,863,034...93,988,309 		JBrowse link
G Hsp90b1 heat shock protein 90, beta (Grp94), member 1 IAGP MGI PMID:17634284 NCBI chr10:86,526,705...86,541,308
Ensembl chr10:86,526,073...86,541,373 		JBrowse link
G Lefty1 left right determination factor 1 IAGP MGI PMID:12431380 NCBI chr 1:180,762,587...180,765,966
Ensembl chr 1:180,762,587...180,765,965 		JBrowse link
G Max Max protein IAGP MGI PMID:10640271 NCBI chr12:76,984,045...77,009,123
Ensembl chr12:76,984,043...77,008,975 		JBrowse link
G Nodal nodal growth differentiation factor IAGP MGI PMID:12431380 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
G Palb2 partner and localizer of BRCA2 IAGP MGI PMID:20484223 NCBI chr 7:121,706,485...121,732,203
Ensembl chr 7:121,706,485...121,732,208 		JBrowse link
G Pou2f1 POU domain, class 2, transcription factor 1 IAGP MGI PMID:20876643 NCBI chr 1:165,692,719...165,830,318
Ensembl chr 1:165,692,723...165,830,247 		JBrowse link
G Rac1 Rac family small GTPase 1 IAGP MGI PMID:10030666 NCBI chr 5:143,491,236...143,513,786
Ensembl chr 5:143,489,389...143,513,791 		JBrowse link
G Smad2 SMAD family member 2 IAGP MGI PMID:9655392 NCBI chr18:76,369,898...76,444,819
Ensembl chr18:76,374,651...76,444,034 		JBrowse link
G Smad4 SMAD family member 4 IAGP MGI PMID:9420335 PMID:9520423 NCBI chr18:73,767,861...73,836,862
Ensembl chr18:73,772,080...73,836,851 		JBrowse link
G Tfap2c transcription factor AP-2, gamma IAGP MGI PMID:12015300 NCBI chr 2:172,387,599...172,400,542
Ensembl chr 2:172,391,513...172,400,542 		JBrowse link
G Trim33 tripartite motif-containing 33 IAGP MGI PMID:20573697 NCBI chr 3:103,186,609...103,266,086
Ensembl chr 3:103,186,609...103,266,091 		JBrowse link
G Tsg101 tumor susceptibility gene 101 IAGP MGI PMID:11172041 NCBI chr 7:46,538,693...46,569,716
Ensembl chr 7:46,538,697...46,569,717 		JBrowse link
G Zic3 zinc finger protein of the cerebellum 3 IAGP MGI PMID:23471918 NCBI chr  X:57,075,988...57,081,990
Ensembl chr  X:57,068,060...57,087,096 		JBrowse link
embryonic-extraembryonic boundary constriction term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2a activin receptor IIA IAGP MGI PMID:10452853 PMID:16991118 NCBI chr 2:48,704,121...48,793,276
Ensembl chr 2:48,704,121...48,793,281 		JBrowse link
G Acvr2b activin receptor IIB IAGP MGI PMID:10452853 PMID:16991118 NCBI chr 9:119,231,081...119,271,214
Ensembl chr 9:119,231,184...119,264,061 		JBrowse link
G Apc APC, WNT signaling pathway regulator IAGP MGI PMID:12645927 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist IAGP MGI PMID:12431380 NCBI chr 4:82,799,988...82,803,388
Ensembl chr 4:82,799,988...82,803,385 		JBrowse link
G Eomes eomesodermin IAGP MGI PMID:18171685 NCBI chr 9:118,307,259...118,315,176
Ensembl chr 9:118,307,280...118,315,200 		JBrowse link
G Foxa2 forkhead box A2 IAGP MGI PMID:8069909 NCBI chr 2:147,884,797...147,888,889
Ensembl chr 2:147,884,797...147,888,889 		JBrowse link
G Foxh1 forkhead box H1 IAGP MGI PMID:11358869 NCBI chr15:76,552,029...76,554,286
Ensembl chr15:76,552,425...76,554,148 		JBrowse link
G Gdf3 growth differentiation factor 3 IAGP MGI PMID:16368929 NCBI chr 6:122,582,362...122,587,046
Ensembl chr 6:122,582,362...122,587,046 		JBrowse link
G Hira histone cell cycle regulator IAGP MGI PMID:11884616 NCBI chr16:18,695,500...18,789,059
Ensembl chr16:18,695,787...18,789,059 		JBrowse link
G Htt huntingtin IAGP MGI PMID:7618107 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878 		JBrowse link
G Ldb1 LIM domain binding 1 IAGP MGI PMID:12490556 NCBI chr19:46,019,963...46,036,584
Ensembl chr19:46,020,009...46,033,653 		JBrowse link
G Lefty1 left right determination factor 1 IAGP MGI PMID:12431380 NCBI chr 1:180,762,587...180,765,966
Ensembl chr 1:180,762,587...180,765,965 		JBrowse link
G Lhx1 LIM homeobox protein 1 IAGP MGI PMID:7700351 PMID:10862151 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
G Nodal nodal growth differentiation factor IAGP MGI PMID:11311163 PMID:12091315 PMID:18171685 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
G Otx2 orthodenticle homeobox 2 IAGP MGI PMID:8565836 PMID:16845372 NCBI chr14:48,894,238...48,905,101
Ensembl chr14:48,895,134...48,911,276 		JBrowse link
G Plpp3 phospholipid phosphatase 3 IAGP MGI PMID:12925589 NCBI chr 4:105,014,544...105,089,964
Ensembl chr 4:105,014,544...105,089,961 		JBrowse link
G Rac1 Rac family small GTPase 1 IAGP MGI PMID:20689803 NCBI chr 5:143,491,236...143,513,786
Ensembl chr 5:143,489,389...143,513,791 		JBrowse link
G Strip1 striatin interacting protein 1 IAGP MGI PMID:29203676 NCBI chr 3:107,519,848...107,539,010
Ensembl chr 3:107,519,848...107,539,010 		JBrowse link
G Tln1 talin 1 IAGP MGI PMID:11084655 NCBI chr 4:43,531,513...43,562,583
Ensembl chr 4:43,531,519...43,562,691 		JBrowse link
G Yap1 yes-associated protein 1 IAGP MGI PMID:16354681 NCBI chr 9:7,932,000...8,004,890
Ensembl chr 9:7,932,000...8,004,597 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16965
    embryo phenotype 2436
      abnormal embryo morphology 1859
        abnormal embryonic-extraembryonic boundary morphology 37
          embryonic-extraembryonic boundary constriction 20
paths to the root