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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:skeletal muscle necrosis
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Accession:MP:0003852 term browser browse the term
Definition:morphological changes resulting from pathological death of skeletal muscle tissue; usually due to irreversible damage


show annotations for term's descendants           Sort by:
skeletal muscle necrosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl2 C-C motif chemokine ligand 2 IAGP MGI PMID:17135576 NCBI chr11:81,926,403...81,928,278
Ensembl chr11:81,926,397...81,928,279 		JBrowse link
G Col6a1 collagen, type VI, alpha 1 IAGP MGI PMID:9817932 NCBI chr10:76,544,626...76,561,878
Ensembl chr10:76,544,626...76,562,002 		JBrowse link
G Dag1 dystroglycan 1 IAGP MGI PMID:12230980 NCBI chr 9:108,082,060...108,141,176
Ensembl chr 9:108,081,833...108,141,157 		JBrowse link
G Dmd dystrophin, muscular dystrophy IAGP MGI PMID:3239377 PMID:6583703 PMID:9288751 PMID:9288752 PMID:10559919 More... NCBI chr  X:81,858,244...84,248,656
Ensembl chr  X:81,992,476...84,249,747 		JBrowse link
G Dtna dystrobrevin alpha IAGP MGI PMID:10559919 NCBI chr18:23,443,063...23,792,776
Ensembl chr18:23,548,192...23,792,772 		JBrowse link
G Dysf dysferlin IAGP MGI PMID:21060153 NCBI chr 6:83,985,344...84,188,042
Ensembl chr 6:83,985,572...84,188,042 		JBrowse link
G Egln2 egl-9 family hypoxia-inducible factor 2 IAGP MGI PMID:18176562 NCBI chr 7:26,858,083...26,866,227
Ensembl chr 7:26,858,083...26,866,227 		JBrowse link
G Fktn fukutin IAGP MGI PMID:23562821 NCBI chr 4:53,713,745...53,765,785
Ensembl chr 4:53,713,998...53,777,890 		JBrowse link
G Foxj3 forkhead box J3 IAGP MGI PMID:19914232 NCBI chr 4:119,396,858...119,486,316
Ensembl chr 4:119,394,201...119,486,316 		JBrowse link
G Foxk1 forkhead box K1 IAGP MGI PMID:10792059 NCBI chr 5:142,387,252...142,447,770
Ensembl chr 5:142,387,252...142,447,766 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:24132234 PMID:29415061 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Itga7 integrin alpha 7 IAGP MGI PMID:22798625 NCBI chr10:128,769,633...128,794,155
Ensembl chr10:128,769,645...128,794,155 		JBrowse link
G Ky kyphoscoliosis peptidase IAGP MGI PMID:1372391 NCBI chr 9:102,382,954...102,423,443
Ensembl chr 9:102,382,949...102,423,438 		JBrowse link
G Myf5 myogenic factor 5 IAGP MGI PMID:23562821 NCBI chr10:107,318,769...107,322,787
Ensembl chr10:107,318,769...107,321,995 		JBrowse link
G Pax7 paired box 7 IAGP MGI PMID:23933088 NCBI chr 4:139,464,357...139,560,841
Ensembl chr 4:139,464,373...139,560,839 		JBrowse link
G Pfkfb3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 IAGP MGI PMID:32492393 NCBI chr 2:11,476,241...11,558,882
Ensembl chr 2:11,476,244...11,558,888 		JBrowse link
G Plaa phospholipase A2, activating protein IAGP MGI PMID:28413018 NCBI chr 4:94,453,376...94,491,696
Ensembl chr 4:94,455,751...94,491,481 		JBrowse link
G Scn8a sodium channel, voltage-gated, type VIII, alpha IAGP MGI PMID:11532991 NCBI chr15:100,766,600...100,943,819
Ensembl chr15:100,767,739...100,943,819 		JBrowse link
G Sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) IAGP MGI PMID:10481911 NCBI chr11:46,861,904...47,880,309
Ensembl chr11:46,787,080...47,879,796 		JBrowse link
G Sgcg sarcoglycan, gamma (dystrophin-associated glycoprotein) IAGP MGI PMID:12609501 NCBI chr14:61,456,555...61,495,939
Ensembl chr14:61,456,564...61,495,939 		JBrowse link
G Smn1 survival motor neuron 1 IAGP MGI PMID:11238465 NCBI chr13:100,259,713...100,274,206
Ensembl chr13:100,261,360...100,274,198 		JBrowse link
G Stim1 stromal interaction molecule 1 IAGP MGI PMID:31666234 NCBI chr 7:101,909,279...102,086,525
Ensembl chr 7:101,917,013...102,086,526 		JBrowse link
G Synm synemin, intermediate filament protein IAGP MGI PMID:25567810 NCBI chr 7:67,379,909...67,409,490
Ensembl chr 7:67,379,908...67,409,490 		JBrowse link
G Terc telomerase RNA component IAGP MGI PMID:21145579 NCBI chr 3:96,321,753...96,322,149
Ensembl chr 3:96,321,753...96,322,149 		JBrowse link
G Utrn utrophin IAGP MGI PMID:9288751 PMID:9288752 PMID:10559919 NCBI chr10:12,257,931...12,745,632
Ensembl chr10:12,257,932...12,745,109 		JBrowse link
skeletal muscle fiber necrosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ano5 anoctamin 5 IAGP MGI PMID:26911675 NCBI chr 7:51,160,668...51,248,455
Ensembl chr 7:51,160,777...51,248,457 		JBrowse link
G Barx2 BarH-like homeobox 2 IAGP MGI PMID:22076929 NCBI chr 9:31,757,340...31,824,581
Ensembl chr 9:31,757,340...31,824,758 		JBrowse link
G Cav3 caveolin 3 IAGP MGI PMID:11259414 NCBI chr 6:112,436,466...112,449,833
Ensembl chr 6:112,436,466...112,449,833 		JBrowse link
G Crppa CDP-L-ribitol pyrophosphorylase A IAGP MGI PMID:35422047 NCBI chr12:36,430,334...36,739,502
Ensembl chr12:36,431,449...36,739,502 		JBrowse link
G Cryab crystallin, alpha B IAGP MGI PMID:21445271 NCBI chr 9:50,657,251...50,667,936
Ensembl chr 9:50,662,625...50,667,936 		JBrowse link
G Ctss cathepsin S IAGP MGI PMID:26966179 NCBI chr 3:95,434,097...95,463,716
Ensembl chr 3:95,434,097...95,463,714 		JBrowse link
G Des desmin IAGP MGI PMID:18490514 NCBI chr 1:75,336,936...75,345,223
Ensembl chr 1:75,336,973...75,345,223 		JBrowse link
G Dmd dystrophin, muscular dystrophy IAGP MGI PMID:2967442 PMID:3239377 PMID:3440862 PMID:8186696 PMID:12917328 More... NCBI chr  X:81,858,244...84,248,656
Ensembl chr  X:81,992,476...84,249,747 		JBrowse link
G Dysf dysferlin IAGP MGI PMID:12736685 PMID:15254015 PMID:25198651 PMID:30292141 NCBI chr 6:83,985,344...84,188,042
Ensembl chr 6:83,985,572...84,188,042 		JBrowse link
G Fat1 FAT atypical cadherin 1 IAGP MGI PMID:23785297 NCBI chr 8:45,386,137...45,505,294
Ensembl chr 8:45,388,484...45,505,294 		JBrowse link
G Fgf2 fibroblast growth factor 2 IAGP MGI PMID:12917328 NCBI chr 3:37,402,616...37,464,255
Ensembl chr 3:37,402,495...37,464,257 		JBrowse link
G Fgf6 fibroblast growth factor 6 IAGP MGI PMID:12917328 NCBI chr 6:126,992,505...127,001,681
Ensembl chr 6:126,992,549...127,005,150 		JBrowse link
G Fkrp fukutin related protein IAGP MGI PMID:20675713 NCBI chr 7:16,543,192...16,550,657
Ensembl chr 7:16,543,171...16,550,657 		JBrowse link
G Fktn fukutin IAGP MGI PMID:25198651 NCBI chr 4:53,713,745...53,765,785
Ensembl chr 4:53,713,998...53,777,890 		JBrowse link
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 IAGP MGI PMID:29905857 NCBI chr 6:87,019,828...87,069,189
Ensembl chr 6:87,019,828...87,069,179 		JBrowse link
G Lama2 laminin, alpha 2 IAGP MGI PMID:3440862 PMID:12609503 NCBI chr10:26,857,281...27,493,021
Ensembl chr10:26,856,032...27,495,754 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 IAGP MGI PMID:7506762 PMID:7602333 PMID:25198651 NCBI chr 8:73,541,227...74,080,164
Ensembl chr 8:73,541,227...74,080,168 		JBrowse link
G Maml1 mastermind like transcriptional coactivator 1 IAGP MGI PMID:16510869 NCBI chr11:50,146,461...50,183,163
Ensembl chr11:50,146,461...50,183,138 		JBrowse link
G Myf5 myogenic factor 5 IAGP MGI PMID:17961534 PMID:29168801 PMID:35422047 NCBI chr10:107,318,769...107,322,787
Ensembl chr10:107,318,769...107,321,995 		JBrowse link
G Ndor1 NADPH dependent diflavin oxidoreductase 1 IAGP MGI PMID:24589777 NCBI chr 2:25,134,825...25,145,458
Ensembl chr 2:25,134,833...25,146,034
Ensembl chr 2:25,134,833...25,146,034
Ensembl chr 2:25,134,833...25,146,034 		JBrowse link
G Pfkm phosphofructokinase, muscle IAGP MGI PMID:19696889 NCBI chr15:97,990,470...98,030,328
Ensembl chr15:97,990,470...98,030,332 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 IAGP MGI PMID:23630012 NCBI chr 9:105,520,156...105,564,854
Ensembl chr 9:105,520,177...105,564,856 		JBrowse link
G Plec plectin IAGP MGI PMID:18490514 NCBI chr15:76,055,174...76,115,578
Ensembl chr15:76,055,174...76,116,774 		JBrowse link
G Scyl1 SCY1-like 1 (S. cerevisiae) IAGP MGI PMID:7595654 NCBI chr19:5,808,450...5,821,461
Ensembl chr19:5,808,379...5,821,447 		JBrowse link
G Sgcb sarcoglycan, beta (dystrophin-associated glycoprotein) IAGP MGI PMID:10441321 NCBI chr 5:73,790,092...73,805,080
Ensembl chr 5:73,790,092...73,805,133 		JBrowse link
G Slc8a3 solute carrier family 8 (sodium/calcium exchanger), member 3 IAGP MGI PMID:14722618 NCBI chr12:81,244,689...81,380,506
Ensembl chr12:81,244,689...81,379,954 		JBrowse link
G Spin1 spindlin 1 IAGP MGI PMID:29168801 NCBI chr13:51,254,523...51,306,588
Ensembl chr13:51,254,916...51,306,582 		JBrowse link
G Ttn titin IAGP MGI PMID:20855473 NCBI chr 2:76,534,324...76,812,901
Ensembl chr 2:76,534,324...76,812,891 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16534
    muscle phenotype 1919
      abnormal muscle morphology 1407
        abnormal skeletal muscle morphology 635
          skeletal muscle necrosis 50
            skeletal muscle fiber necrosis 28
Path 2
Term Annotations click to browse term
  mammalian phenotype 16534
    cellular phenotype 5307
      abnormal cell physiology 4740
        abnormal cell death 2098
          cellular necrosis 320
            skeletal muscle necrosis 50
              skeletal muscle fiber necrosis 28
paths to the root