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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal hard palate morphology
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Accession:MP:0003756 term browser browse the term
Definition:any structural anomaly of the anterior part of the palate that is supported by and includes the palatal extensions of the maxillary and palatine bones in the adult


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abnormal hard palate morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 IAGP MGI PMID:19127565 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114 		JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C (P57) IAGP MGI PMID:9136926 NCBI chr 7:143,012,076...143,014,802
Ensembl chr 7:143,012,076...143,014,787 		JBrowse link
G Gskip GSK3B interacting protein IAGP MGI PMID:26582204 NCBI chr12:105,651,611...105,669,317
Ensembl chr12:105,651,088...105,669,282 		JBrowse link
G Krt6a keratin 6A IAGP MGI PMID:10953016 NCBI chr15:101,598,363...101,602,740
Ensembl chr15:101,598,345...101,602,742 		JBrowse link
G Krt6b keratin 6B IAGP MGI PMID:10953016 NCBI chr15:101,584,458...101,588,728
Ensembl chr15:101,584,458...101,588,722 		JBrowse link
G Lmna lamin A IAGP MGI PMID:20376364 NCBI chr 3:88,388,455...88,413,842
Ensembl chr 3:88,387,454...88,417,263 		JBrowse link
G Sostdc1 sclerostin domain containing 1 IEA MGI NCBI chr12:36,364,168...36,368,451
Ensembl chr12:36,364,138...36,368,451 		JBrowse link
G St14 suppression of tumorigenicity 14 (colon carcinoma) IAGP MGI PMID:16651618 NCBI chr 9:30,999,886...31,043,138
Ensembl chr 9:31,000,698...31,043,149 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II IAGP MGI PMID:16780827 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428 		JBrowse link
abnormal maxillary shelf morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx1 ALX homeobox 1 IAGP MGI PMID:35127681 NCBI chr10:102,843,708...102,865,501
Ensembl chr10:102,834,568...102,866,076 		JBrowse link
G Bmp2 bone morphogenetic protein 2 IAGP MGI PMID:30413887 NCBI chr 2:133,394,079...133,404,816
Ensembl chr 2:133,394,079...133,404,805 		JBrowse link
G Bmp7 bone morphogenetic protein 7 IAGP MGI PMID:19127565 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114 		JBrowse link
G Bnc2 basonuclin 2 IAGP MGI PMID:19706529 NCBI chr 4:84,185,041...84,594,132
Ensembl chr 4:84,193,332...84,593,512 		JBrowse link
G Boc biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein IAGP MGI PMID:21183473 NCBI chr16:44,305,408...44,379,233
Ensembl chr16:44,305,412...44,379,260 		JBrowse link
G Cdon cell adhesion molecule-related/down-regulated by oncogenes IAGP MGI PMID:21183473 NCBI chr 9:35,332,823...35,418,948
Ensembl chr 9:35,332,424...35,418,948 		JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 IAGP MGI PMID:21087601 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Edil3 EGF-like repeats and discoidin I-like domains 3 IAGP MGI PMID:17468181 NCBI chr13:88,969,591...89,471,344
Ensembl chr13:88,969,591...89,471,342 		JBrowse link
G Foxf2 forkhead box F2 IAGP MGI PMID:12812790 NCBI chr13:31,809,799...31,815,389
Ensembl chr13:31,809,799...31,815,386 		JBrowse link
G Foxg1 forkhead box G1 IAGP MGI PMID:21982646 NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644 		JBrowse link
G Glg1 golgi apparatus protein 1 IAGP MGI PMID:20023171 NCBI chr 8:111,879,916...111,985,842
Ensembl chr 8:111,881,053...111,985,848 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:17610273 PMID:29727702 PMID:30413887 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Pax6 paired box 6 IAGP MGI PMID:3794606 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:17610273 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607 		JBrowse link
G Pbx1 pre B cell leukemia homeobox 1 IAGP MGI PMID:21982646 NCBI chr 1:167,946,933...168,259,898
Ensembl chr 1:167,946,933...168,259,839 		JBrowse link
G Pbx2 pre B cell leukemia homeobox 2 IAGP MGI PMID:21982646 NCBI chr17:34,811,233...34,816,374
Ensembl chr17:34,810,240...34,816,374 		JBrowse link
G Prmt1 protein arginine N-methyltransferase 1 IAGP MGI PMID:29727702 NCBI chr 7:44,626,179...44,635,844
Ensembl chr 7:44,625,413...44,635,992 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607067 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607067 NCBI chr15:102,143,373...102,165,957
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Rspo2 R-spondin 2 IAGP MGI PMID:21237142 NCBI chr15:42,884,184...43,034,990
Ensembl chr15:42,884,190...43,034,222 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:17468181 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 IAGP MGI PMID:34423857 NCBI chr14:106,129,381...106,134,899
Ensembl chr14:106,129,381...106,134,253 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 IAGP MGI PMID:13539273 NCBI chr18:5,591,330...5,775,468
Ensembl chr18:5,591,860...5,775,467 		JBrowse link
abnormal palatal rugae morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eda ectodysplasin-A IAGP MGI PMID:18028050 NCBI chr  X:99,019,212...99,444,366
Ensembl chr  X:99,019,212...99,444,368 		JBrowse link
G Ednrb endothelin receptor type B IAGP MGI PMID:17693063 NCBI chr14:104,052,051...104,083,248
Ensembl chr14:104,052,061...104,081,838 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:23754280 NCBI chr 8:26,008,775...26,065,734
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:23754280 PMID:32169905 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Ift88 intraflagellar transport 88 IAGP MGI PMID:31226309 NCBI chr14:57,661,519...57,755,393
Ensembl chr14:57,661,519...57,755,393 		JBrowse link
G Meis2 Meis homeobox 2 IAGP MGI PMID:32169905 NCBI chr 2:115,691,745...115,897,925
Ensembl chr 2:115,693,545...115,896,320 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 IAGP MGI PMID:24689077 NCBI chr15:93,396,992...93,494,147
Ensembl chr15:93,396,995...93,493,772 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:31226309 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Sirt1 sirtuin 1 IAGP MGI PMID:28273169 NCBI chr10:63,154,784...63,174,814
Ensembl chr10:63,154,784...63,217,483 		JBrowse link
G Sostdc1 sclerostin domain containing 1 IAGP MGI PMID:19782673 NCBI chr12:36,364,168...36,368,451
Ensembl chr12:36,364,138...36,368,451 		JBrowse link
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1-like IAGP MGI PMID:34302166 NCBI chr10:75,047,872...75,148,234
Ensembl chr10:75,047,905...75,148,577 		JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 IAGP MGI PMID:17693063 NCBI chr14:106,129,381...106,134,899
Ensembl chr14:106,129,381...106,134,253 		JBrowse link
G Tbx22 T-box 22 IAGP MGI PMID:19648291 NCBI chr  X:106,711,570...106,732,586
Ensembl chr  X:106,711,570...106,732,584 		JBrowse link
G Tmem107 transmembrane protein 107 IAGP MGI PMID:28954202 NCBI chr11:68,961,635...68,964,119
Ensembl chr11:68,961,632...68,964,119 		JBrowse link
abnormal palate bone morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B IAGP MGI PMID:17693063 NCBI chr14:104,052,051...104,083,248
Ensembl chr14:104,052,061...104,081,838 		JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 IAGP MGI PMID:18219393 NCBI chr10:22,978,861...23,226,785
Ensembl chr10:22,978,862...23,226,684 		JBrowse link
G Fgf9 fibroblast growth factor 9 IAGP MGI PMID:33959039 NCBI chr14:58,308,131...58,350,311
Ensembl chr14:58,308,004...58,350,177 		JBrowse link
G Foxn3 forkhead box N3 IAGP MGI PMID:20691664 NCBI chr12:99,156,340...99,529,926
Ensembl chr12:99,156,337...99,529,841 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:34184034 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Pdgfc platelet-derived growth factor, C polypeptide IAGP MGI PMID:15361870 NCBI chr 3:80,943,723...81,121,347
Ensembl chr 3:80,943,723...81,121,347 		JBrowse link
G Pds5b PDS5 cohesin associated factor B IAGP MGI PMID:17652350 NCBI chr 5:150,597,178...150,734,134
Ensembl chr 5:150,597,204...150,734,155 		JBrowse link
G Ptprf protein tyrosine phosphatase, receptor type, F IAGP MGI PMID:23863482 NCBI chr 4:118,065,410...118,148,602
Ensembl chr 4:118,065,410...118,148,602 		JBrowse link
G Ptprs protein tyrosine phosphatase, receptor type, S IAGP MGI PMID:23863482 NCBI chr17:56,719,426...56,783,526
Ensembl chr17:56,719,426...56,783,483 		JBrowse link
G Srsf3 serine and arginine-rich splicing factor 3 IAGP MGI PMID:34184034 NCBI chr17:29,251,634...29,262,346
Ensembl chr17:29,251,602...29,262,347 		JBrowse link
abnormal palatine bone horizontal plate morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E330023G01Rik RIKEN cDNA E330023G01 gene IAGP MGI PMID:24565867 NCBI chr 9:98,630,652...98,702,140
Ensembl chr 9:98,630,652...98,702,140 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:20503384 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 IAGP MGI PMID:19086028 NCBI chr 5:33,879,068...33,894,412
Ensembl chr 5:33,879,018...33,894,412 		JBrowse link
G Foxc2 forkhead box C2 IAGP MGI PMID:9409679 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Foxf2 forkhead box F2 IAGP MGI PMID:12812790 NCBI chr13:31,809,799...31,815,389
Ensembl chr13:31,809,799...31,815,386 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 IAGP MGI PMID:11978771 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:17610273 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Irf6 interferon regulatory factor 6 IAGP MGI PMID:20196077 NCBI chr 1:192,835,420...192,854,344
Ensembl chr 1:192,835,419...192,854,331 		JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:17610273 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607 		JBrowse link
G Pdss2 prenyl (solanesyl) diphosphate synthase, subunit 2 IAGP MGI PMID:21871565 NCBI chr10:43,095,396...43,340,878
Ensembl chr10:43,097,482...43,340,878 		JBrowse link
absent hard palate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 IAGP MGI PMID:19509472 NCBI chr15:52,931,657...53,209,579
Ensembl chr15:52,927,434...53,209,555 		JBrowse link
G Fst follistatin IAGP MGI PMID:7885475 NCBI chr13:114,588,798...114,595,522
Ensembl chr13:114,588,826...114,595,487 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:19509472 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Inhba inhibin beta-A IAGP MGI PMID:7885473 NCBI chr13:16,178,841...16,206,194
Ensembl chr13:16,186,436...16,206,206 		JBrowse link
absent maxillary shelf term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Boc biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein IAGP MGI PMID:21183473 NCBI chr16:44,305,408...44,379,233
Ensembl chr16:44,305,412...44,379,260 		JBrowse link
G Cdon cell adhesion molecule-related/down-regulated by oncogenes IAGP MGI PMID:21183473 NCBI chr 9:35,332,823...35,418,948
Ensembl chr 9:35,332,424...35,418,948 		JBrowse link
G Dlx2 distal-less homeobox 2 IAGP MGI PMID:9187081 NCBI chr 2:71,373,752...71,377,098
Ensembl chr 2:71,373,752...71,377,098 		JBrowse link
G Gli2 GLI-Kruppel family member GLI2 IAGP MGI PMID:9006072 NCBI chr 1:118,761,791...118,987,578
Ensembl chr 1:118,761,862...118,981,349 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:32169905 PMID:34184034 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Jag2 jagged 2 IAGP MGI PMID:9531541 NCBI chr12:112,871,423...112,893,432
Ensembl chr12:112,871,439...112,893,396 		JBrowse link
G Kcnj13 potassium inwardly-rectifying channel, subfamily J, member 13 IAGP MGI PMID:26402555 NCBI chr 1:87,309,133...87,322,451
Ensembl chr 1:87,314,085...87,322,451 		JBrowse link
G Meis2 Meis homeobox 2 IAGP MGI PMID:32169905 NCBI chr 2:115,691,745...115,897,925
Ensembl chr 2:115,693,545...115,896,320 		JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:7914451 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927 		JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:9732271 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607 		JBrowse link
G Prrx1 paired related homeobox 1 IAGP MGI PMID:7758948 PMID:9729491 PMID:9876178 NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279 		JBrowse link
G Prrx2 paired related homeobox 2 IAGP MGI PMID:9729491 PMID:9876178 NCBI chr 2:30,735,076...30,771,263
Ensembl chr 2:30,724,984...30,771,263 		JBrowse link
G Six1 sine oculis-related homeobox 1 IAGP MGI PMID:15788460 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Six4 sine oculis-related homeobox 4 IAGP MGI PMID:15788460 NCBI chr12:73,146,383...73,160,805
Ensembl chr12:73,146,383...73,160,230 		JBrowse link
G Srsf3 serine and arginine-rich splicing factor 3 IAGP MGI PMID:34184034 NCBI chr17:29,251,634...29,262,346
Ensembl chr17:29,251,602...29,262,347 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 IAGP MGI PMID:9217007 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
absent palatal rugae term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:15199404 NCBI chr13:118,851,235...118,929,109
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:15199404 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
absent palate bones term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:32169905 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:32169905 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Meis2 Meis homeobox 2 IAGP MGI PMID:32169905 NCBI chr 2:115,691,745...115,897,925
Ensembl chr 2:115,693,545...115,896,320 		JBrowse link
G Nedd4 neural precursor cell expressed, developmentally down-regulated 4 IAGP MGI PMID:24080509 NCBI chr 9:72,569,613...72,657,133
Ensembl chr 9:72,569,628...72,657,134 		JBrowse link
absent palatine bone horizontal plate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid5b AT rich interactive domain 5B (MRF1-like) IAGP MGI PMID:17143286 NCBI chr10:67,928,353...68,114,596
Ensembl chr10:67,928,350...68,114,570 		JBrowse link
G Cyp51 cytochrome P450, family 51 IAGP MGI PMID:21705796 NCBI chr 5:4,130,674...4,154,697
Ensembl chr 5:4,131,145...4,154,746 		JBrowse link
G Dlx2 distal-less homeobox 2 IAGP MGI PMID:9187081 NCBI chr 2:71,373,752...71,377,098
Ensembl chr 2:71,373,752...71,377,098 		JBrowse link
G Dlx5 distal-less homeobox 5 IAGP MGI PMID:10433909 NCBI chr 6:6,877,801...6,882,068
Ensembl chr 6:6,877,805...6,882,085 		JBrowse link
G E2f1 E2F transcription factor 1 IAGP MGI PMID:31241461 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Ednrb endothelin receptor type B IAGP MGI PMID:17693063 NCBI chr14:104,052,051...104,083,248
Ensembl chr14:104,052,061...104,081,838 		JBrowse link
G Foxc2 forkhead box C2 IAGP MGI PMID:9106663 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Foxf2 forkhead box F2 IAGP MGI PMID:12812790 NCBI chr13:31,809,799...31,815,389
Ensembl chr13:31,809,799...31,815,386 		JBrowse link
G Gli2 GLI-Kruppel family member GLI2 IAGP MGI PMID:9006072 NCBI chr 1:118,761,791...118,987,578
Ensembl chr 1:118,761,862...118,981,349 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:29727702 PMID:32169905 PMID:34184034 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Jag2 jagged 2 IAGP MGI PMID:9531541 NCBI chr12:112,871,423...112,893,432
Ensembl chr12:112,871,439...112,893,396 		JBrowse link
G Kcnj13 potassium inwardly-rectifying channel, subfamily J, member 13 IAGP MGI PMID:26402555 NCBI chr 1:87,309,133...87,322,451
Ensembl chr 1:87,314,085...87,322,451 		JBrowse link
G Meis2 Meis homeobox 2 IAGP MGI PMID:32169905 NCBI chr 2:115,691,745...115,897,925
Ensembl chr 2:115,693,545...115,896,320 		JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:7914451 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927 		JBrowse link
G Pax3 paired box 3 IAGP MGI PMID:31241461 NCBI chr 1:78,077,904...78,173,773
Ensembl chr 1:78,077,904...78,173,771 		JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:9732271 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607 		JBrowse link
G Prmt1 protein arginine N-methyltransferase 1 IAGP MGI PMID:29727702 NCBI chr 7:44,626,179...44,635,844
Ensembl chr 7:44,625,413...44,635,992 		JBrowse link
G Prrx1 paired related homeobox 1 IAGP MGI PMID:7758948 NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279 		JBrowse link
G Rbfox2 RNA binding protein, fox-1 homolog (C. elegans) 2 IAGP MGI PMID:31241461 NCBI chr15:76,963,190...77,193,058
Ensembl chr15:76,963,190...77,191,204 		JBrowse link
G Srsf3 serine and arginine-rich splicing factor 3 IAGP MGI PMID:34184034 NCBI chr17:29,251,634...29,262,346
Ensembl chr17:29,251,602...29,262,347 		JBrowse link
G Vax1 ventral anterior homeobox 1 IAGP MGI PMID:28771384 NCBI chr19:59,152,912...59,158,829
Ensembl chr19:59,154,619...59,158,488 		JBrowse link
G Zfp950 zinc finger protein 950 IAGP MGI PMID:17143286 NCBI chr19:61,042,278...61,129,297
Ensembl chr19:61,042,278...61,129,278 		JBrowse link
cleft hard palate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd11 ankyrin repeat domain 11 IAGP MGI PMID:33996804 NCBI chr 8:123,610,060...123,769,023
Ensembl chr 8:123,610,561...123,769,016 		JBrowse link
G E2f1 E2F transcription factor 1 IAGP MGI PMID:33996804 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Esrp1 epithelial splicing regulatory protein 1 IAGP MGI PMID:26371508 NCBI chr 4:11,331,933...11,386,783
Ensembl chr 4:11,331,933...11,386,783 		JBrowse link
G Esrp2 epithelial splicing regulatory protein 2 IAGP MGI PMID:26371508 NCBI chr 8:106,856,658...106,863,825
Ensembl chr 8:106,856,951...106,863,606 		JBrowse link
G Gpr161 G protein-coupled receptor 161 IAGP MGI PMID:34887903 NCBI chr 1:165,108,760...165,154,314
Ensembl chr 1:165,123,358...165,154,314 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:32541010 PMID:34887903 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Kdm6a lysine (K)-specific demethylase 6A IAGP MGI PMID:32541010 NCBI chr  X:18,027,101...18,146,175
Ensembl chr  X:18,028,814...18,146,175 		JBrowse link
G Phc1 polyhomeotic 1 IAGP MGI PMID:9367423 NCBI chr 6:122,294,690...122,317,946
Ensembl chr 6:122,294,690...122,317,520 		JBrowse link
decreased maxillary shelf size term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Boc biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein IAGP MGI PMID:21183473 NCBI chr16:44,305,408...44,379,233
Ensembl chr16:44,305,412...44,379,260 		JBrowse link
G Cdon cell adhesion molecule-related/down-regulated by oncogenes IAGP MGI PMID:21183473 NCBI chr 9:35,332,823...35,418,948
Ensembl chr 9:35,332,424...35,418,948 		JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 IAGP MGI PMID:30459452 NCBI chr 8:68,809,433...69,188,270
Ensembl chr 8:68,809,433...69,187,798 		JBrowse link
G Dlx5 distal-less homeobox 5 IAGP MGI PMID:10433909 NCBI chr 6:6,877,801...6,882,068
Ensembl chr 6:6,877,805...6,882,085 		JBrowse link
G E2f1 E2F transcription factor 1 IAGP MGI PMID:25053435 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 IAGP MGI PMID:10471511 NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:23754280 NCBI chr 8:26,008,775...26,065,734
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:23754280 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:23754280 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 IAGP MGI PMID:25053435 NCBI chr11:57,719,539...57,722,973
Ensembl chr11:57,719,531...57,723,644 		JBrowse link
G Kcnj2 potassium inwardly-rectifying channel, subfamily J, member 2 IAGP MGI PMID:22949619 NCBI chr11:110,956,990...110,967,651
Ensembl chr11:110,956,990...110,967,647 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 IAGP MGI PMID:24689077 NCBI chr15:93,396,992...93,494,147
Ensembl chr15:93,396,995...93,493,772 		JBrowse link
G Tmem107 transmembrane protein 107 IAGP MGI PMID:28954202 NCBI chr11:68,961,635...68,964,119
Ensembl chr11:68,961,632...68,964,119 		JBrowse link
decreased palatal rugae number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 IAGP MGI PMID:16207732 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659 		JBrowse link
decreased palatine bone horizontal plate size term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid5b AT rich interactive domain 5B (MRF1-like) IAGP MGI PMID:17143286 NCBI chr10:67,928,353...68,114,596
Ensembl chr10:67,928,350...68,114,570 		JBrowse link
G Csrnp1 cysteine-serine-rich nuclear protein 1 IAGP MGI PMID:17143286 NCBI chr 9:119,800,229...119,813,808
Ensembl chr 9:119,800,229...119,813,724 		JBrowse link
G E2f1 E2F transcription factor 1 IAGP MGI PMID:25053435 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 IAGP MGI PMID:10471511 NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:31300413 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 IAGP MGI PMID:25053435 NCBI chr11:57,719,539...57,722,973
Ensembl chr11:57,719,531...57,723,644 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:31300413 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
G Rspo2 R-spondin 2 IAGP MGI PMID:19233133 NCBI chr15:42,884,184...43,034,990
Ensembl chr15:42,884,190...43,034,222 		JBrowse link
G Schip1 schwannomin interacting protein 1 IAGP MGI PMID:17143286 NCBI chr 3:67,972,135...68,533,815
Ensembl chr 3:67,972,135...68,533,814 		JBrowse link
G Sgpl1 sphingosine phosphate lyase 1 IAGP MGI PMID:17143286 NCBI chr10:60,934,421...60,983,463
Ensembl chr10:60,934,421...60,983,482 		JBrowse link
G Tbx22 T-box 22 IAGP MGI PMID:19648291 NCBI chr  X:106,711,570...106,732,586
Ensembl chr  X:106,711,570...106,732,584 		JBrowse link
G Tiparp TCDD-inducible poly(ADP-ribose) polymerase IAGP MGI PMID:17143286 NCBI chr 3:65,435,868...65,462,939
Ensembl chr 3:65,435,831...65,462,939 		JBrowse link
G Wdr19 WD repeat domain 19 IAGP MGI PMID:22228095 NCBI chr 5:65,357,039...65,417,758
Ensembl chr 5:65,357,039...65,417,758 		JBrowse link
G Zfp640 zinc finger protein 640 IAGP MGI PMID:17143286 NCBI chr13:66,817,010...66,828,867
Ensembl chr13:66,817,992...66,846,307 		JBrowse link
G Zfp950 zinc finger protein 950 IAGP MGI PMID:17143286 NCBI chr19:61,042,278...61,129,297
Ensembl chr19:61,042,278...61,129,278 		JBrowse link
maxillary shelf hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 IAGP MGI PMID:28326341 NCBI chr 4:137,047,007...137,085,070
Ensembl chr 4:137,047,007...137,085,031 		JBrowse link
G Ednrb endothelin receptor type B IAGP MGI PMID:17693063 NCBI chr14:104,052,051...104,083,248
Ensembl chr14:104,052,061...104,081,838 		JBrowse link
G Esrp1 epithelial splicing regulatory protein 1 IAGP MGI PMID:32253237 NCBI chr 4:11,331,933...11,386,783
Ensembl chr 4:11,331,933...11,386,783 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:35212626 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Kdm6b KDM1 lysine (K)-specific demethylase 6B IAGP MGI PMID:35212626 NCBI chr11:69,289,334...69,311,188
Ensembl chr11:69,289,334...69,304,501 		JBrowse link
G Mn1 meningioma 1 IAGP MGI PMID:15870292 NCBI chr 5:111,565,166...111,604,896
Ensembl chr 5:111,565,228...111,604,899 		JBrowse link
G Ndst1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 IAGP MGI PMID:18385133 NCBI chr18:60,817,566...60,907,465
Ensembl chr18:60,817,566...60,881,722 		JBrowse link
G Ndst3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 IAGP MGI PMID:18385133 NCBI chr 3:123,319,815...123,484,822
Ensembl chr 3:123,319,815...123,484,502 		JBrowse link
G Prrx1 paired related homeobox 1 IAGP MGI PMID:9729491 PMID:9876178 NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279 		JBrowse link
G Rspo2 R-spondin 2 IAGP MGI PMID:19233133 NCBI chr15:42,884,184...43,034,990
Ensembl chr15:42,884,190...43,034,222 		JBrowse link
G Vax1 ventral anterior homeobox 1 IAGP MGI PMID:28771384 NCBI chr19:59,152,912...59,158,829
Ensembl chr19:59,154,619...59,158,488 		JBrowse link
palate bone hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnas GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus IAGP MGI PMID:26859889 NCBI chr 2:174,126,113...174,188,537
Ensembl chr 2:174,126,113...174,188,537 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:26859889 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Mn1 meningioma 1 IAGP MGI PMID:15870292 NCBI chr 5:111,565,166...111,604,896
Ensembl chr 5:111,565,228...111,604,899 		JBrowse link
G Tbx22 T-box 22 IAGP MGI PMID:19648291 NCBI chr  X:106,711,570...106,732,586
Ensembl chr  X:106,711,570...106,732,584 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 IAGP MGI PMID:9389660 NCBI chr18:5,591,330...5,775,468
Ensembl chr18:5,591,860...5,775,467 		JBrowse link
palatine bone horizontal plate hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 IAGP MGI PMID:28326341 NCBI chr 4:137,047,007...137,085,070
Ensembl chr 4:137,047,007...137,085,031 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:35212626 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Kdm6b KDM1 lysine (K)-specific demethylase 6B IAGP MGI PMID:35212626 NCBI chr11:69,289,334...69,311,188
Ensembl chr11:69,289,334...69,304,501 		JBrowse link
G Mn1 meningioma 1 IAGP MGI PMID:15870292 NCBI chr 5:111,565,166...111,604,896
Ensembl chr 5:111,565,228...111,604,899 		JBrowse link
palatine bone hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E2f1 E2F transcription factor 1 IAGP MGI PMID:25725491 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Ece1 endothelin converting enzyme 1 IAGP MGI PMID:9449665 NCBI chr 4:137,589,548...137,692,540
Ensembl chr 4:137,589,548...137,692,540 		JBrowse link
G Esrp1 epithelial splicing regulatory protein 1 IAGP MGI PMID:32253237 NCBI chr 4:11,331,933...11,386,783
Ensembl chr 4:11,331,933...11,386,783 		JBrowse link
G Gsc goosecoid homeobox IAGP MGI PMID:7555718 NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589 		JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 IAGP MGI PMID:16938878 NCBI chr18:60,946,827...60,982,055
Ensembl chr18:60,946,827...60,982,043 		JBrowse link
G Vax1 ventral anterior homeobox 1 IAGP MGI PMID:28771384 NCBI chr19:59,152,912...59,158,829
Ensembl chr19:59,154,619...59,158,488 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16239
    digestive/alimentary phenotype 1837
      abnormal digestive system morphology 1450
        abnormal palate morphology 431
          abnormal secondary palate morphology 232
            abnormal hard palate morphology 107
              abnormal incisive canal morphology 0
              abnormal palatal rugae morphology + 17
              abnormal palate bone morphology + 85
              absent hard palate 4
              cleft hard palate + 8
Path 2
Term Annotations click to browse term
  mammalian phenotype 16239
    craniofacial phenotype 1570
      abnormal craniofacial morphology 1570
        abnormal facial morphology 1048
          abnormal mouth morphology 768
            abnormal palate morphology 431
              abnormal secondary palate morphology 232
                abnormal hard palate morphology 107
                  abnormal incisive canal morphology 0
                  abnormal palatal rugae morphology + 17
                  abnormal palate bone morphology + 85
                  absent hard palate 4
                  cleft hard palate + 8
paths to the root