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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal cervical vertebrae morphology
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Accession:MP:0003048 term browser browse the term
Definition:any structural anomaly of any or all of the seven bony segments of the spine located anterior to the thoracic vertebrae and caudal to the skull
Synonyms:narrow_synonym: Atlantoaxial instability
 xref: HP:0003467


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abnormal cervical vertebrae morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 IAGP MGI PMID:22508565 NCBI chr 2:58,336,450...58,456,840
Ensembl chr 2:58,278,656...58,457,169 		JBrowse link
G Bmp5 bone morphogenetic protein 5 IAGP MGI PMID:24539717 NCBI chr 9:75,682,647...75,807,598
Ensembl chr 9:75,682,646...75,807,592 		JBrowse link
G Cacna1s calcium channel, voltage-dependent, L type, alpha 1S subunit IAGP MGI PMID:14300095 NCBI chr 1:135,980,549...136,047,268
Ensembl chr 1:135,980,488...136,047,560 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 IEA MGI NCBI chr 7:27,992,980...28,001,210
Ensembl chr 7:27,992,978...28,001,663 		JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 IAGP MGI PMID:16387292 NCBI chr19:25,649,758...25,656,355
Ensembl chr19:25,649,775...25,656,355 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:12756187 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 IAGP MGI PMID:23200862 NCBI chr 5:33,879,068...33,894,412
Ensembl chr 5:33,879,018...33,894,412 		JBrowse link
G Fgfrl1 fibroblast growth factor receptor-like 1 IAGP MGI PMID:19383940 NCBI chr 5:108,842,051...108,854,816
Ensembl chr 5:108,840,248...108,854,790 		JBrowse link
G Foxc1 forkhead box C1 IEA MGI NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Gdf11 growth differentiation factor 11 IAGP MGI PMID:10391213 PMID:24019467 NCBI chr10:128,716,393...128,727,587
Ensembl chr10:128,718,164...128,727,587 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:26952979 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,055,336 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IAGP MGI PMID:23449628 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668 		JBrowse link
G Hoxa3 homeobox A3 IAGP MGI PMID:1673020 PMID:9441667 NCBI chr 6:52,146,039...52,190,316
Ensembl chr 6:52,146,042...52,190,316 		JBrowse link
G Hoxa4 homeobox A4 IAGP MGI PMID:7628700 PMID:7809093 PMID:7918106 NCBI chr 6:52,166,662...52,168,683
Ensembl chr 6:52,166,651...52,168,733 		JBrowse link
G Hoxa5 homeobox A5 IAGP MGI PMID:17417799 PMID:24307483 NCBI chr 6:52,178,768...52,181,437
Ensembl chr 6:52,178,734...52,181,567 		JBrowse link
G Hoxa6 homeobox A6 IAGP MGI PMID:7918106 NCBI chr 6:52,181,838...52,185,652
Ensembl chr 6:52,183,268...52,185,702 		JBrowse link
G Hoxb3 homeobox B3 IAGP MGI PMID:7913519 PMID:9441667 NCBI chr11:96,197,927...96,238,756
Ensembl chr11:96,214,152...96,238,756 		JBrowse link
G Hoxb4 homeobox B4 IAGP MGI PMID:7628700 PMID:11518511 NCBI chr11:96,209,093...96,212,464
Ensembl chr11:96,209,093...96,212,464 		JBrowse link
G Hoxd1 homeobox D1 IAGP MGI PMID:11511348 NCBI chr 2:74,593,324...74,595,486
Ensembl chr 2:74,593,324...74,595,486 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:7910549 PMID:7913519 PMID:9441667 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Hoxd4 homeobox D4 IAGP MGI PMID:7628700 PMID:7750651 PMID:10559481 NCBI chr 2:74,552,322...74,559,504
Ensembl chr 2:74,542,273...74,559,504 		JBrowse link
G Hyal2 hyaluronoglucosaminidase 2 IAGP MGI PMID:18772348 NCBI chr 9:107,445,096...107,449,975
Ensembl chr 9:107,445,144...107,449,978 		JBrowse link
G Idua iduronidase, alpha-L IAGP MGI PMID:15111796 NCBI chr 5:108,808,197...108,833,312
Ensembl chr 5:108,808,197...108,832,423 		JBrowse link
G Is(In8B2-8B3.1;6C1)1Tshir Insertion, Chr8 B2-B3.1 into Chr 6C1, Toshihiko Shiroishi 1 IAGP MGI PMID:23449628
G Kat6a K(lysine) acetyltransferase 6A IAGP MGI PMID:19922872 NCBI chr 8:23,349,458...23,433,275
Ensembl chr 8:23,349,551...23,433,275 		JBrowse link
G Kmt2a lysine (K)-specific methyltransferase 2A IAGP MGI PMID:11536426 NCBI chr 9:44,714,652...44,793,492
Ensembl chr 9:44,714,652...44,792,594 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IAGP MGI PMID:19956724 NCBI chr 5:140,593,096...140,601,300
Ensembl chr 5:140,593,075...140,601,300 		JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 IAGP MGI PMID:11790802 PMID:12379497 NCBI chr19:5,790,928...5,808,564
Ensembl chr19:5,790,932...5,808,560 		JBrowse link
G Mbtd1 mbt domain containing 1 IAGP MGI PMID:21252303 NCBI chr11:93,776,635...93,837,815
Ensembl chr11:93,776,678...93,837,811 		JBrowse link
G Mesp2 mesoderm posterior 2 IAGP MGI PMID:16996494 NCBI chr 7:79,460,475...79,463,179
Ensembl chr 7:79,460,475...79,463,187 		JBrowse link
G Mllt3 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3 IAGP MGI PMID:12242306 NCBI chr 4:87,688,162...87,951,652
Ensembl chr 4:87,688,162...87,951,601 		JBrowse link
G Msgn1 mesogenin 1 IAGP MGI PMID:11124811 NCBI chr12:11,258,383...11,258,949
Ensembl chr12:11,258,361...11,258,973 		JBrowse link
G Myf5 myogenic factor 5 IAGP MGI PMID:11060232 NCBI chr10:107,318,769...107,322,787
Ensembl chr10:107,318,769...107,321,995 		JBrowse link
G Myf6 myogenic factor 6 IAGP MGI PMID:7588068 NCBI chr10:107,328,709...107,330,584
Ensembl chr10:107,328,714...107,330,598 		JBrowse link
G Nell1 NEL-like 1 IAGP MGI PMID:16537572 NCBI chr 7:49,625,098...50,513,037
Ensembl chr 7:49,624,612...50,516,356 		JBrowse link
G Nkx3-2 NK3 homeobox 2 IAGP MGI PMID:10449756 PMID:10886375 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844 		JBrowse link
G Pax1 paired box 1 IAGP MGI PMID:9671740 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215 		JBrowse link
G Pdgfra platelet derived growth factor receptor, alpha polypeptide IAGP MGI PMID:9226440 PMID:11782318 NCBI chr 5:75,311,988...75,358,867
Ensembl chr 5:75,312,953...75,358,876 		JBrowse link
G Pgap4 post-GPI attachment to proteins GalNAc transferase 4 IAGP MGI PMID:35151686 NCBI chr 4:49,584,506...49,597,876
Ensembl chr 4:49,584,506...49,597,876 		JBrowse link
G Phc1 polyhomeotic 1 IAGP MGI PMID:16024804 NCBI chr 6:122,294,690...122,317,551
Ensembl chr 6:122,294,690...122,317,520 		JBrowse link
G Phc2 polyhomeotic 2 IAGP MGI PMID:16024804 NCBI chr 4:128,548,448...128,646,674
Ensembl chr 4:128,548,495...128,646,674 		JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic IAGP MGI PMID:19097194 NCBI chr17:83,522,708...83,532,496
Ensembl chr17:83,522,721...83,532,499 		JBrowse link
G Polb polymerase (DNA directed), beta IEA MGI NCBI chr 8:23,118,135...23,143,482
Ensembl chr 8:23,118,142...23,143,451 		JBrowse link
G Psip1 PC4 and SFRS1 interacting protein 1 IAGP MGI PMID:16980622 NCBI chr 4:83,373,917...83,404,700
Ensembl chr 4:83,373,917...83,404,696 		JBrowse link
G Rai1 retinoic acid induced 1 IAGP MGI PMID:15746153 NCBI chr11:59,995,743...60,090,023
Ensembl chr11:59,995,839...60,090,023 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607067 PMID:9376317 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607067 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607067 PMID:8388780 PMID:9376317 PMID:10559481 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Ripply1 ripply transcriptional repressor 1 IAGP MGI PMID:20346937 NCBI chr  X:138,680,430...138,683,102
Ensembl chr  X:138,680,298...138,683,102 		JBrowse link
G Rpl38 ribosomal protein L38 IAGP MGI PMID:8995757 NCBI chr11:114,558,644...114,563,159
Ensembl chr11:114,559,350...114,563,157 		JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) IAGP MGI PMID:9284043 NCBI chr 4:155,238,532...155,307,536
Ensembl chr 4:155,238,532...155,307,049 		JBrowse link
G Sox5 SRY (sex determining region Y)-box 5 IAGP MGI PMID:18543318 NCBI chr 6:143,774,151...144,728,008
Ensembl chr 6:143,774,151...144,727,703 		JBrowse link
G Sulf1 sulfatase 1 IAGP MGI PMID:18213582 NCBI chr 1:12,762,421...12,946,090
Ensembl chr 1:12,762,501...12,931,416 		JBrowse link
G Sulf2 sulfatase 2 IAGP MGI PMID:18213582 NCBI chr 2:165,915,819...165,997,603
Ensembl chr 2:165,915,009...165,997,583 		JBrowse link
G T brachyury, T-box transcription factor T IAGP MGI PMID:5906493 NCBI chr17:8,653,255...8,661,328
Ensembl chr17:8,653,255...8,661,328 		JBrowse link
G Tasp1 taspase, threonine aspartase 1 IAGP MGI PMID:16951254 NCBI chr 2:139,675,399...139,908,767
Ensembl chr 2:139,675,400...139,908,725 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:16696966 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Tbx15 T-box 15 IAGP MGI PMID:15652702 NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575 		JBrowse link
G Tbx6 T-box 6 IAGP MGI PMID:4073528 NCBI chr 7:126,380,655...126,384,720
Ensembl chr 7:126,380,655...126,384,732 		JBrowse link
G Twist2 twist basic helix-loop-helix transcription factor 2 IAGP MGI PMID:12756187 NCBI chr 1:91,729,183...91,775,756
Ensembl chr 1:91,729,183...91,775,750 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 IAGP MGI PMID:15013800 NCBI chr17:66,230,060...66,258,198
Ensembl chr17:66,228,967...66,258,221 		JBrowse link
G Wbp11 WW domain binding protein 11 IAGP MGI PMID:33276377 NCBI chr 6:136,790,652...136,805,214
Ensembl chr 6:136,790,652...136,805,231 		JBrowse link
G Wfikkn1 WAP, FS, Ig, KU, and NTR-containing protein 1 IAGP MGI PMID:24019467 NCBI chr17:26,096,602...26,099,832
Ensembl chr17:26,096,602...26,099,832 		JBrowse link
G Wfikkn2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 IAGP MGI PMID:24019467 NCBI chr11:94,126,777...94,138,613
Ensembl chr11:94,126,782...94,136,831 		JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A IAGP MGI PMID:11335109 NCBI chr11:59,138,859...59,181,579
Ensembl chr11:59,138,859...59,181,578 		JBrowse link
abnormal arcus anterior morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxb2 homeobox B2 IAGP MGI PMID:9012503 NCBI chr11:96,242,458...96,244,846
Ensembl chr11:96,241,351...96,244,838 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:10688203 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Kmt2a lysine (K)-specific methyltransferase 2A IAGP MGI PMID:16618927 PMID:23934123 NCBI chr 9:44,714,652...44,793,492
Ensembl chr 9:44,714,652...44,792,594 		JBrowse link
G Pcgf6 polycomb group ring finger 6 IAGP MGI PMID:28304275 NCBI chr19:47,022,056...47,039,379
Ensembl chr19:47,022,056...47,039,345 		JBrowse link
G Tasp1 taspase, threonine aspartase 1 IAGP MGI PMID:16951254 NCBI chr 2:139,675,399...139,908,767
Ensembl chr 2:139,675,400...139,908,725 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:16696966 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Tshz1 teashirt zinc finger family member 1 IAGP MGI PMID:17586487 NCBI chr18:84,029,752...84,105,833
Ensembl chr18:84,029,752...84,105,831 		JBrowse link
abnormal cervical atlas morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmi1 Bmi1 polycomb ring finger oncogene IAGP MGI PMID:11290297 NCBI chr 2:18,681,953...18,691,440
Ensembl chr 2:18,681,829...18,691,440 		JBrowse link
G Cbx2 chromobox 2 IAGP MGI PMID:9043087 NCBI chr11:118,913,845...118,922,101
Ensembl chr11:118,913,788...118,922,096 		JBrowse link
G Ccn2 cellular communication network factor 2 IAGP MGI PMID:12736220 NCBI chr10:24,471,340...24,474,581
Ensembl chr10:24,471,340...24,474,581 		JBrowse link
G Cdx1 caudal type homeobox 1 IAGP MGI PMID:17537796 NCBI chr18:61,151,934...61,169,292
Ensembl chr18:61,151,934...61,169,271 		JBrowse link
G Chtop chromatin target of PRMT1 IEA MGI NCBI chr 3:90,405,846...90,417,400
Ensembl chr 3:90,406,263...90,416,805 		JBrowse link
G Fgfrl1 fibroblast growth factor receptor-like 1 IAGP MGI PMID:19383940 NCBI chr 5:108,842,051...108,854,816
Ensembl chr 5:108,840,248...108,854,790 		JBrowse link
G Foxc1 forkhead box C1 IAGP MGI PMID:5500588 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Fstl1 follistatin-like 1 IAGP MGI PMID:21826198 NCBI chr16:37,597,417...37,656,878
Ensembl chr16:37,597,235...37,656,876 		JBrowse link
G H13 histocompatibility 13 IEA MGI NCBI chr 2:152,511,292...152,550,590
Ensembl chr 2:152,511,381...152,550,590 		JBrowse link
G Hoxa3 homeobox A3 IAGP MGI PMID:9441667 NCBI chr 6:52,146,039...52,190,316
Ensembl chr 6:52,146,042...52,190,316 		JBrowse link
G Hoxb3 homeobox B3 IAGP MGI PMID:7913519 PMID:9441667 NCBI chr11:96,197,927...96,238,756
Ensembl chr11:96,214,152...96,238,756 		JBrowse link
G Hoxd1 homeobox D1 IAGP MGI PMID:11511348 NCBI chr 2:74,593,324...74,595,486
Ensembl chr 2:74,593,324...74,595,486 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:7910549 PMID:7913519 PMID:10688203 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Hoxd4 homeobox D4 IAGP MGI PMID:7750651 NCBI chr 2:74,552,322...74,559,504
Ensembl chr 2:74,542,273...74,559,504 		JBrowse link
G Kat6a K(lysine) acetyltransferase 6A IAGP MGI PMID:19922872 NCBI chr 8:23,349,458...23,433,275
Ensembl chr 8:23,349,551...23,433,275 		JBrowse link
G Kmt2a lysine (K)-specific methyltransferase 2A IAGP MGI PMID:11536426 NCBI chr 9:44,714,652...44,793,492
Ensembl chr 9:44,714,652...44,792,594 		JBrowse link
G Mbtd1 mbt domain containing 1 IAGP MGI PMID:21252303 NCBI chr11:93,776,635...93,837,815
Ensembl chr11:93,776,678...93,837,811 		JBrowse link
G Mllt3 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3 IAGP MGI PMID:12242306 NCBI chr 4:87,688,162...87,951,652
Ensembl chr 4:87,688,162...87,951,601 		JBrowse link
G Nkx3-1 NK3 homeobox 1 IAGP MGI PMID:12204261 NCBI chr14:69,428,141...69,432,107
Ensembl chr14:69,428,087...69,432,111 		JBrowse link
G Nkx3-2 NK3 homeobox 2 IAGP MGI PMID:10572046 PMID:10886375 PMID:12204261 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844 		JBrowse link
G Npr2 natriuretic peptide receptor 2 IAGP MGI PMID:23065701 NCBI chr 4:43,629,015...43,651,437
Ensembl chr 4:43,631,935...43,651,244 		JBrowse link
G Pax1 paired box 1 IAGP MGI PMID:9671740 PMID:16093716 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215 		JBrowse link
G Pcgf2 polycomb group ring finger 2 IAGP MGI PMID:11290297 NCBI chr11:97,579,647...97,593,260
Ensembl chr11:97,579,649...97,591,323 		JBrowse link
G Pds5a PDS5 cohesin associated factor A IAGP MGI PMID:19412548 NCBI chr 5:65,763,062...65,855,579
Ensembl chr 5:65,763,064...65,855,616 		JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic IAGP MGI PMID:19097194 NCBI chr17:83,522,708...83,532,496
Ensembl chr17:83,522,721...83,532,499 		JBrowse link
G Polb polymerase (DNA directed), beta IEA MGI NCBI chr 8:23,118,135...23,143,482
Ensembl chr 8:23,118,142...23,143,451 		JBrowse link
G Prrx1 paired related homeobox 1 IAGP MGI PMID:9729491 NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279 		JBrowse link
G Prrx2 paired related homeobox 2 IAGP MGI PMID:9729491 NCBI chr 2:30,735,076...30,771,263
Ensembl chr 2:30,724,984...30,771,263 		JBrowse link
G Psip1 PC4 and SFRS1 interacting protein 1 IAGP MGI PMID:16980622 NCBI chr 4:83,373,917...83,404,700
Ensembl chr 4:83,373,917...83,404,696 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607067 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607067 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607067 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Ring1 ring finger protein 1 IAGP MGI PMID:11060235 NCBI chr17:34,239,766...34,243,654
Ensembl chr17:34,239,766...34,243,654 		JBrowse link
G Rpl38 ribosomal protein L38 IAGP MGI PMID:8995757 NCBI chr11:114,558,644...114,563,159
Ensembl chr11:114,559,350...114,563,157 		JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) IAGP MGI PMID:9284043 NCBI chr 4:155,238,532...155,307,536
Ensembl chr 4:155,238,532...155,307,049 		JBrowse link
G Sp3 trans-acting transcription factor 3 IAGP MGI PMID:11472836 NCBI chr 2:72,766,774...72,810,790
Ensembl chr 2:72,766,771...72,810,790 		JBrowse link
G T brachyury, T-box transcription factor T IAGP MGI PMID:5906493 NCBI chr17:8,653,255...8,661,328
Ensembl chr17:8,653,255...8,661,328 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242110 PMID:16696966 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Tbx15 T-box 15 IAGP MGI PMID:15652702 PMID:15728667 NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575 		JBrowse link
G Tbx6 T-box 6 IAGP MGI PMID:4073528 NCBI chr 7:126,380,655...126,384,720
Ensembl chr 7:126,380,655...126,384,732 		JBrowse link
G Wnt9a wingless-type MMTV integration site family, member 9A IAGP MGI PMID:16818445 NCBI chr11:59,197,675...59,224,378
Ensembl chr11:59,197,754...59,224,378 		JBrowse link
abnormal cervical axis morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col10a1 collagen, type X, alpha 1 IAGP MGI PMID:7842010 NCBI chr10:34,265,977...34,273,081
Ensembl chr10:34,265,977...34,273,081 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:9694798 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Fstl1 follistatin-like 1 IAGP MGI PMID:21826198 NCBI chr16:37,597,417...37,656,878
Ensembl chr16:37,597,235...37,656,876 		JBrowse link
G Hoxa3 homeobox A3 IAGP MGI PMID:9441667 NCBI chr 6:52,146,039...52,190,316
Ensembl chr 6:52,146,042...52,190,316 		JBrowse link
G Hoxb3 homeobox B3 IAGP MGI PMID:9441667 NCBI chr11:96,197,927...96,238,756
Ensembl chr11:96,214,152...96,238,756 		JBrowse link
G Hoxb4 homeobox B4 IAGP MGI PMID:8097432 NCBI chr11:96,209,093...96,212,464
Ensembl chr11:96,209,093...96,212,464 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:7910549 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Hoxd4 homeobox D4 IAGP MGI PMID:7750651 NCBI chr 2:74,552,322...74,559,504
Ensembl chr 2:74,542,273...74,559,504 		JBrowse link
G Kmt2a lysine (K)-specific methyltransferase 2A IAGP MGI PMID:11536426 PMID:16618927 NCBI chr 9:44,714,652...44,793,492
Ensembl chr 9:44,714,652...44,792,594 		JBrowse link
G Mbtd1 mbt domain containing 1 IAGP MGI PMID:21252303 NCBI chr11:93,776,635...93,837,815
Ensembl chr11:93,776,678...93,837,811 		JBrowse link
G Mllt3 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3 IAGP MGI PMID:12242306 NCBI chr 4:87,688,162...87,951,652
Ensembl chr 4:87,688,162...87,951,601 		JBrowse link
G Nkx3-2 NK3 homeobox 2 IAGP MGI PMID:10886375 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844 		JBrowse link
G Pax1 paired box 1 IAGP MGI PMID:9671740 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215 		JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic IAGP MGI PMID:19097194 NCBI chr17:83,522,708...83,532,496
Ensembl chr17:83,522,721...83,532,499 		JBrowse link
G Prrx1 paired related homeobox 1 IAGP MGI PMID:9729491 NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279 		JBrowse link
G Prrx2 paired related homeobox 2 IAGP MGI PMID:9729491 NCBI chr 2:30,735,076...30,771,263
Ensembl chr 2:30,724,984...30,771,263 		JBrowse link
G Psip1 PC4 and SFRS1 interacting protein 1 IAGP MGI PMID:16980622 NCBI chr 4:83,373,917...83,404,700
Ensembl chr 4:83,373,917...83,404,696 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607067 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607067 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607067 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Ring1 ring finger protein 1 IAGP MGI PMID:11060235 NCBI chr17:34,239,766...34,243,654
Ensembl chr17:34,239,766...34,243,654 		JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) IAGP MGI PMID:9284043 NCBI chr 4:155,238,532...155,307,536
Ensembl chr 4:155,238,532...155,307,049 		JBrowse link
G Sulf1 sulfatase 1 IAGP MGI PMID:18213582 NCBI chr 1:12,762,421...12,946,090
Ensembl chr 1:12,762,501...12,931,416 		JBrowse link
G Sulf2 sulfatase 2 IAGP MGI PMID:18213582 NCBI chr 2:165,915,819...165,997,603
Ensembl chr 2:165,915,009...165,997,583 		JBrowse link
G Tasp1 taspase, threonine aspartase 1 IAGP MGI PMID:16951254 NCBI chr 2:139,675,399...139,908,767
Ensembl chr 2:139,675,400...139,908,725 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:16696966 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Tbx15 T-box 15 IAGP MGI PMID:15652702 NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575 		JBrowse link
G Tenm4 teneurin transmembrane protein 4 IAGP MGI PMID:15489520 NCBI chr 7:95,550,262...96,560,300
Ensembl chr 7:95,820,453...96,560,300 		JBrowse link
G Tyr tyrosinase IAGP MGI PMID:15489520 NCBI chr 7:87,073,979...87,142,637
Ensembl chr 7:87,073,979...87,142,720 		JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A IAGP MGI PMID:11335109 NCBI chr11:59,138,859...59,181,579
Ensembl chr11:59,138,859...59,181,578 		JBrowse link
abnormal odontoid process morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Etl4 enhancer trap locus 4 IAGP MGI PMID:9706697 NCBI chr 2:19,915,018...20,815,346
Ensembl chr 2:19,914,591...20,815,524 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:10688203 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Hoxd4 homeobox D4 IAGP MGI PMID:7750651 NCBI chr 2:74,552,322...74,559,504
Ensembl chr 2:74,542,273...74,559,504 		JBrowse link
G Mtf2 metal response element binding transcription factor 2 IAGP MGI PMID:21059868 NCBI chr 5:108,213,518...108,257,085
Ensembl chr 5:108,213,540...108,256,870 		JBrowse link
G Nkx3-2 NK3 homeobox 2 IAGP MGI PMID:10886375 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844 		JBrowse link
G Pcgf2 polycomb group ring finger 2 IAGP MGI PMID:8625838 NCBI chr11:97,579,647...97,593,260
Ensembl chr11:97,579,649...97,591,323 		JBrowse link
G T brachyury, T-box transcription factor T IAGP MGI PMID:5906493 NCBI chr17:8,653,255...8,661,328
Ensembl chr17:8,653,255...8,661,328 		JBrowse link
G Tbx15 T-box 15 IAGP MGI PMID:15652702 PMID:15728667 NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575 		JBrowse link
abnormal ventral tubercle of atlas morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeobox 1 IAGP MGI PMID:14660544 NCBI chr18:61,151,934...61,169,292
Ensembl chr18:61,151,934...61,169,271 		JBrowse link
G Pax1 paired box 1 IAGP MGI PMID:9671740 PMID:16093716 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215 		JBrowse link
G Pgap4 post-GPI attachment to proteins GalNAc transferase 4 IAGP MGI PMID:35151686 NCBI chr 4:49,584,506...49,597,876
Ensembl chr 4:49,584,506...49,597,876 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:14660544 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:8270769 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
absent arcus anterior term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin IAGP MGI PMID:12810603 NCBI chr16:20,551,528...20,561,132
Ensembl chr16:20,551,877...20,561,134 		JBrowse link
G Hoxd1 homeobox D1 IAGP MGI PMID:11511348 NCBI chr 2:74,593,324...74,595,486
Ensembl chr 2:74,593,324...74,595,486 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:10688203 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Nkx3-2 NK3 homeobox 2 IAGP MGI PMID:10572046 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242110 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
absent cervical atlas term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa3 homeobox A3 IAGP MGI PMID:20498049 NCBI chr 6:52,146,039...52,190,316
Ensembl chr 6:52,146,042...52,190,316 		JBrowse link
G Hoxb3 homeobox B3 IAGP MGI PMID:7913519 NCBI chr11:96,197,927...96,238,756
Ensembl chr11:96,214,152...96,238,756 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:7913519 PMID:20498049 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
absent odontoid process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk10 cyclin dependent kinase 10 IAGP MGI PMID:28886341 NCBI chr 8:123,951,580...123,958,995
Ensembl chr 8:123,951,581...123,958,989 		JBrowse link
G Hoxd1 homeobox D1 IAGP MGI PMID:11511348 NCBI chr 2:74,593,324...74,595,486
Ensembl chr 2:74,593,324...74,595,486 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:7910549 PMID:10688203 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
absent ventral tubercle of atlas term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx3-2 NK3 homeobox 2 IAGP MGI PMID:10886375 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844 		JBrowse link
cervical vertebrae degeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scn8a sodium channel, voltage-gated, type VIII, alpha IEA MGI NCBI chr15:100,766,600...100,943,819
Ensembl chr15:100,767,739...100,943,819 		JBrowse link
cervical vertebral fusion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IAGP MGI PMID:16624858 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Cacna1s calcium channel, voltage-dependent, L type, alpha 1S subunit IAGP MGI PMID:14300095 NCBI chr 1:135,980,549...136,047,268
Ensembl chr 1:135,980,488...136,047,560 		JBrowse link
G Cdon cell adhesion molecule-related/down-regulated by oncogenes IAGP MGI PMID:17504941 NCBI chr 9:35,332,836...35,418,948
Ensembl chr 9:35,332,424...35,418,948 		JBrowse link
G Chuk conserved helix-loop-helix ubiquitous kinase IAGP MGI PMID:10195896 NCBI chr19:44,061,773...44,095,940
Ensembl chr19:44,061,774...44,095,919 		JBrowse link
G Deaf1 DEAF1, transcription factor IAGP MGI PMID:14966286 NCBI chr 7:140,877,089...140,918,758
Ensembl chr 7:140,877,093...140,907,603 		JBrowse link
G Dhrs3 dehydrogenase/reductase 3 IAGP MGI PMID:24005908 NCBI chr 4:144,618,712...144,654,214
Ensembl chr 4:144,619,397...144,654,779 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 IAGP MGI PMID:10471511 NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:20503384 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Flnb filamin, beta IAGP MGI PMID:17510210 PMID:17606870 NCBI chr14:14,518,185...14,651,852
Ensembl chr14:14,518,185...14,651,816 		JBrowse link
G Gas1 growth arrest specific 1 IAGP MGI PMID:17504941 NCBI chr13:60,322,219...60,325,179
Ensembl chr13:60,322,219...60,325,179 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:23671110 PMID:24091011 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,055,336 		JBrowse link
G Hoxa4 homeobox A4 IAGP MGI PMID:7628700 NCBI chr 6:52,166,662...52,168,683
Ensembl chr 6:52,166,651...52,168,733 		JBrowse link
G Hoxa5 homeobox A5 IAGP MGI PMID:17626057 NCBI chr 6:52,178,768...52,181,437
Ensembl chr 6:52,178,734...52,181,567 		JBrowse link
G Hoxb4 homeobox B4 IAGP MGI PMID:7628700 NCBI chr11:96,209,093...96,212,464
Ensembl chr11:96,209,093...96,212,464 		JBrowse link
G Hoxb5 homeobox B5 IAGP MGI PMID:17626057 NCBI chr11:96,194,338...96,196,947
Ensembl chr11:96,194,162...96,196,947 		JBrowse link
G Hoxc5 homeobox C5 IAGP MGI PMID:17626057 NCBI chr15:102,922,440...102,925,861
Ensembl chr15:102,875,878...102,925,861 		JBrowse link
G Hoxd1 homeobox D1 IAGP MGI PMID:11511348 NCBI chr 2:74,593,324...74,595,486
Ensembl chr 2:74,593,324...74,595,486 		JBrowse link
G Hs2st1 heparan sulfate 2-O-sulfotransferase 1 IAGP MGI PMID:9637690 NCBI chr 3:144,135,462...144,275,977
Ensembl chr 3:144,135,467...144,275,942 		JBrowse link
G Ift140 intraflagellar transport 140 IAGP MGI PMID:24009529 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469 		JBrowse link
G Kmt2a lysine (K)-specific methyltransferase 2A IAGP MGI PMID:11536426 NCBI chr 9:44,714,652...44,793,492
Ensembl chr 9:44,714,652...44,792,594 		JBrowse link
G Lmo4 LIM domain only 4 IAGP MGI PMID:14966286 NCBI chr 3:143,894,291...143,911,016
Ensembl chr 3:143,894,291...143,910,981 		JBrowse link
G Mbtd1 mbt domain containing 1 IAGP MGI PMID:21252303 NCBI chr11:93,776,635...93,837,815
Ensembl chr11:93,776,678...93,837,811 		JBrowse link
G Mesp2 mesoderm posterior 2 IAGP MGI PMID:9242490 NCBI chr 7:79,460,475...79,463,179
Ensembl chr 7:79,460,475...79,463,187 		JBrowse link
G Mllt3 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3 IAGP MGI PMID:12242306 NCBI chr 4:87,688,162...87,951,652
Ensembl chr 4:87,688,162...87,951,601 		JBrowse link
G Msgn1 mesogenin 1 IAGP MGI PMID:11124811 NCBI chr12:11,258,383...11,258,949
Ensembl chr12:11,258,361...11,258,973 		JBrowse link
G Myf5 myogenic factor 5 IAGP MGI PMID:11060232 NCBI chr10:107,318,769...107,322,787
Ensembl chr10:107,318,769...107,321,995 		JBrowse link
G Ndc1 NDC1 transmembrane nucleoporin IAGP MGI PMID:3220432 NCBI chr 4:107,225,244...107,273,543
Ensembl chr 4:107,224,981...107,273,543 		JBrowse link
G Pds5a PDS5 cohesin associated factor A IAGP MGI PMID:19412548 NCBI chr 5:65,763,062...65,855,579
Ensembl chr 5:65,763,064...65,855,616 		JBrowse link
G Phc1 polyhomeotic 1 IAGP MGI PMID:9367423 NCBI chr 6:122,294,690...122,317,551
Ensembl chr 6:122,294,690...122,317,520 		JBrowse link
G Phc2 polyhomeotic 2 IAGP MGI PMID:24091011 NCBI chr 4:128,548,448...128,646,674
Ensembl chr 4:128,548,495...128,646,674 		JBrowse link
G Ppp5c protein phosphatase 5, catalytic subunit IAGP MGI PMID:24652767 NCBI chr 7:16,738,575...16,761,812
Ensembl chr 7:16,738,565...16,761,849 		JBrowse link
G Psen1 presenilin 1 IAGP MGI PMID:9160754 NCBI chr12:83,734,926...83,781,869
Ensembl chr12:83,734,926...83,781,973 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607067 PMID:9376317 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:9376317 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Rpl38 ribosomal protein L38 IAGP MGI PMID:8995757 NCBI chr11:114,558,644...114,563,159
Ensembl chr11:114,559,350...114,563,157 		JBrowse link
G Scmh1 sex comb on midleg homolog 1 IAGP MGI PMID:17215307 NCBI chr 4:120,262,347...120,387,397
Ensembl chr 4:120,262,478...120,387,383 		JBrowse link
G Sema3a sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A IAGP MGI PMID:8849723 NCBI chr 5:13,174,789...13,653,453
Ensembl chr 5:13,175,381...13,652,533 		JBrowse link
G Shh sonic hedgehog IEA MGI NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Six1 sine oculis-related homeobox 1 IAGP MGI PMID:12834866 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G T brachyury, T-box transcription factor T IAGP MGI PMID:5906493 NCBI chr17:8,653,255...8,661,328
Ensembl chr17:8,653,255...8,661,328 		JBrowse link
G Tbx6 T-box 6 IAGP MGI PMID:4073528 NCBI chr 7:126,380,655...126,384,720
Ensembl chr 7:126,380,655...126,384,732 		JBrowse link
G Tshz1 teashirt zinc finger family member 1 IAGP MGI PMID:17586487 NCBI chr18:84,029,752...84,105,833
Ensembl chr18:84,029,752...84,105,831 		JBrowse link
G Wbp11 WW domain binding protein 11 IAGP MGI PMID:33276377 NCBI chr 6:136,790,652...136,805,214
Ensembl chr 6:136,790,652...136,805,231 		JBrowse link
cervical vertebral transformation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmi1 Bmi1 polycomb ring finger oncogene IAGP MGI PMID:7926765 PMID:11290297 PMID:18366140 NCBI chr 2:18,681,953...18,691,440
Ensembl chr 2:18,681,829...18,691,440 		JBrowse link
G Btg2 BTG anti-proliferation factor 2 IAGP MGI PMID:15542835 NCBI chr 1:134,002,603...134,006,893
Ensembl chr 1:134,002,908...134,006,858 		JBrowse link
G Cdx1 caudal type homeobox 1 IAGP MGI PMID:14660544 PMID:17537796 NCBI chr18:61,151,934...61,169,292
Ensembl chr18:61,151,934...61,169,271 		JBrowse link
G Cdx2 caudal type homeobox 2 IAGP MGI PMID:9052785 NCBI chr 5:147,237,710...147,244,059
Ensembl chr 5:147,237,615...147,244,080 		JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 IAGP MGI PMID:11157778 NCBI chr19:37,686,186...37,689,984
Ensembl chr19:37,686,246...37,689,984 		JBrowse link
G E2f6 E2F transcription factor 6 IAGP MGI PMID:18366140 NCBI chr12:16,860,932...16,876,753
Ensembl chr12:16,860,964...16,889,743 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:9694798 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Gdf11 growth differentiation factor 11 IAGP MGI PMID:10391213 NCBI chr10:128,716,393...128,727,587
Ensembl chr10:128,718,164...128,727,587 		JBrowse link
G Gsc goosecoid homeobox IAGP MGI PMID:9533949 NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:24091011 PMID:26952979 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,055,336 		JBrowse link
G Hoxa4 homeobox A4 IAGP MGI PMID:7628700 PMID:7809093 NCBI chr 6:52,166,662...52,168,683
Ensembl chr 6:52,166,651...52,168,733 		JBrowse link
G Hoxa5 homeobox A5 IAGP MGI PMID:7901120 PMID:17626057 NCBI chr 6:52,178,768...52,181,437
Ensembl chr 6:52,178,734...52,181,567 		JBrowse link
G Hoxa6 homeobox A6 IAGP MGI PMID:17626057 NCBI chr 6:52,181,838...52,185,652
Ensembl chr 6:52,183,268...52,185,702 		JBrowse link
G Hoxb2 homeobox B2 IAGP MGI PMID:9012503 NCBI chr11:96,242,458...96,244,846
Ensembl chr11:96,241,351...96,244,838 		JBrowse link
G Hoxb4 homeobox B4 IAGP MGI PMID:7628700 PMID:8097432 PMID:9012503 NCBI chr11:96,209,093...96,212,464
Ensembl chr11:96,209,093...96,212,464 		JBrowse link
G Hoxb5 homeobox B5 IAGP MGI PMID:7828847 PMID:17626057 NCBI chr11:96,194,338...96,196,947
Ensembl chr11:96,194,162...96,196,947 		JBrowse link
G Hoxb6 homeobox B6 IAGP MGI PMID:7828847 PMID:17626057 NCBI chr11:96,183,647...96,192,395
Ensembl chr11:96,183,302...96,192,395 		JBrowse link
G Hoxb8 homeobox B8 IAGP MGI PMID:11311170 NCBI chr11:96,170,227...96,176,151
Ensembl chr11:96,172,731...96,176,141 		JBrowse link
G Hoxc5 homeobox C5 IAGP MGI PMID:17626057 NCBI chr15:102,922,440...102,925,861
Ensembl chr15:102,875,878...102,925,861 		JBrowse link
G Hoxc6 homeobox C6 IAGP MGI PMID:17626057 NCBI chr15:102,906,658...102,920,314
Ensembl chr15:102,906,689...102,920,313 		JBrowse link
G Hoxc8 homeobox C8 IAGP MGI PMID:19621436 NCBI chr15:102,898,971...102,902,707
Ensembl chr15:102,899,039...102,902,543 		JBrowse link
G Hoxd4 homeobox D4 IAGP MGI PMID:7628700 PMID:7750651 NCBI chr 2:74,552,322...74,559,504
Ensembl chr 2:74,542,273...74,559,504 		JBrowse link
G Kmt2a lysine (K)-specific methyltransferase 2A IAGP MGI PMID:7477409 PMID:16618927 NCBI chr 9:44,714,652...44,793,492
Ensembl chr 9:44,714,652...44,792,594 		JBrowse link
G Mllt3 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3 IAGP MGI PMID:12242306 NCBI chr 4:87,688,162...87,951,652
Ensembl chr 4:87,688,162...87,951,601 		JBrowse link
G Mtf2 metal response element binding transcription factor 2 IAGP MGI PMID:21059868 NCBI chr 5:108,213,518...108,257,085
Ensembl chr 5:108,213,540...108,256,870 		JBrowse link
G Pcgf2 polycomb group ring finger 2 IAGP MGI PMID:8625838 PMID:11290297 PMID:15741318 PMID:21059868 NCBI chr11:97,579,647...97,593,260
Ensembl chr11:97,579,649...97,591,323 		JBrowse link
G Pcgf6 polycomb group ring finger 6 IAGP MGI PMID:28304275 NCBI chr19:47,022,056...47,039,379
Ensembl chr19:47,022,056...47,039,345 		JBrowse link
G Pds5a PDS5 cohesin associated factor A IAGP MGI PMID:19412548 NCBI chr 5:65,763,062...65,855,579
Ensembl chr 5:65,763,064...65,855,616 		JBrowse link
G Pgap1 post-GPI attachment to proteins 1 IAGP MGI PMID:10529425 NCBI chr 1:54,512,159...54,596,843
Ensembl chr 1:54,512,153...54,596,843 		JBrowse link
G Phc1 polyhomeotic 1 IAGP MGI PMID:9367423 NCBI chr 6:122,294,690...122,317,551
Ensembl chr 6:122,294,690...122,317,520 		JBrowse link
G Phc2 polyhomeotic 2 IAGP MGI PMID:16024804 PMID:21059868 PMID:24091011 NCBI chr 4:128,548,448...128,646,674
Ensembl chr 4:128,548,495...128,646,674 		JBrowse link
G Psip1 PC4 and SFRS1 interacting protein 1 IAGP MGI PMID:16980622 NCBI chr 4:83,373,917...83,404,700
Ensembl chr 4:83,373,917...83,404,696 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607067 PMID:9240560 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607067 PMID:9240560 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607067 PMID:8388780 PMID:9240560 PMID:14660544 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Rnf2 ring finger protein 2 IAGP MGI PMID:12183370 NCBI chr 1:151,345,159...151,376,562
Ensembl chr 1:151,333,755...151,376,706 		JBrowse link
G Rps7 ribosomal protein S7 IAGP MGI PMID:23382688 NCBI chr12:28,680,846...28,685,952
Ensembl chr12:28,680,853...28,685,952 		JBrowse link
G Scmh1 sex comb on midleg homolog 1 IAGP MGI PMID:17215307 NCBI chr 4:120,262,347...120,387,397
Ensembl chr 4:120,262,478...120,387,383 		JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 IAGP MGI PMID:15741318 NCBI chr 1:55,024,328...55,066,660
Ensembl chr 1:55,024,328...55,066,640 		JBrowse link
G Sf3b4 splicing factor 3b, subunit 4 IAGP MGI PMID:31900962 NCBI chr 3:96,079,822...96,084,880
Ensembl chr 3:96,079,648...96,084,880 		JBrowse link
G Sulf1 sulfatase 1 IAGP MGI PMID:18213582 NCBI chr 1:12,762,421...12,946,090
Ensembl chr 1:12,762,501...12,931,416 		JBrowse link
G Sulf2 sulfatase 2 IAGP MGI PMID:18213582 NCBI chr 2:165,915,819...165,997,603
Ensembl chr 2:165,915,009...165,997,583 		JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit IAGP MGI PMID:21059868 NCBI chr11:79,883,932...79,924,949
Ensembl chr11:79,883,932...79,924,949 		JBrowse link
G Tasp1 taspase, threonine aspartase 1 IAGP MGI PMID:16951254 NCBI chr 2:139,675,399...139,908,767
Ensembl chr 2:139,675,400...139,908,725 		JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A IAGP MGI PMID:11335109 NCBI chr11:59,138,859...59,181,579
Ensembl chr11:59,138,859...59,181,578 		JBrowse link
decreased cervical vertebrae number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cert1 ceramide transporter 1 IEA MGI NCBI chr13:96,679,243...96,782,362
Ensembl chr13:96,679,243...96,776,675 		JBrowse link
G Chtop chromatin target of PRMT1 IEA MGI NCBI chr 3:90,405,846...90,417,400
Ensembl chr 3:90,406,263...90,416,805 		JBrowse link
G Cir1 corepressor interacting with RBPJ, 1 IEA MGI NCBI chr 2:73,113,445...73,142,922
Ensembl chr 2:73,113,449...73,143,045 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IAGP MGI PMID:14960495 NCBI chr 5:140,593,096...140,601,300
Ensembl chr 5:140,593,075...140,601,300 		JBrowse link
fusion of atlas and occipital bones term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbx2 chromobox 2 IAGP MGI PMID:9043087 NCBI chr11:118,913,845...118,922,101
Ensembl chr11:118,913,788...118,922,096 		JBrowse link
G Cdx1 caudal type homeobox 1 IAGP MGI PMID:14660544 NCBI chr18:61,151,934...61,169,292
Ensembl chr18:61,151,934...61,169,271 		JBrowse link
G Chtop chromatin target of PRMT1 IEA MGI NCBI chr 3:90,405,846...90,417,400
Ensembl chr 3:90,406,263...90,416,805 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:9694798 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Hoxa3 homeobox A3 IAGP MGI PMID:9441667 NCBI chr 6:52,146,039...52,190,316
Ensembl chr 6:52,146,042...52,190,316 		JBrowse link
G Hoxb3 homeobox B3 IAGP MGI PMID:9441667 NCBI chr11:96,197,927...96,238,756
Ensembl chr11:96,214,152...96,238,756 		JBrowse link
G Hoxd1 homeobox D1 IAGP MGI PMID:11511348 NCBI chr 2:74,593,324...74,595,486
Ensembl chr 2:74,593,324...74,595,486 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:7910549 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Hoxd4 homeobox D4 IAGP MGI PMID:10559481 NCBI chr 2:74,552,322...74,559,504
Ensembl chr 2:74,542,273...74,559,504 		JBrowse link
G Ift140 intraflagellar transport 140 IAGP MGI PMID:24009529 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607067 PMID:9240560 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607067 PMID:9240560 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607067 PMID:8388780 PMID:9240560 PMID:10559481 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Sh3pxd2a SH3 and PX domains 2A IEA MGI NCBI chr19:47,248,613...47,453,053
Ensembl chr19:47,248,613...47,452,840 		JBrowse link
G Tbx18 T-box18 IAGP MGI PMID:15155583 NCBI chr 9:87,584,853...87,613,313
Ensembl chr 9:87,584,853...87,613,313 		JBrowse link
G Tcf15 transcription factor 15 IAGP MGI PMID:8955271 NCBI chr 2:151,984,973...151,991,017
Ensembl chr 2:151,985,481...151,991,017 		JBrowse link
G Tshz1 teashirt zinc finger family member 1 IAGP MGI PMID:17586487 NCBI chr18:84,029,752...84,105,833
Ensembl chr18:84,029,752...84,105,831 		JBrowse link
fusion of atlas and odontoid process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc2 forkhead box C2 IAGP MGI PMID:10364424 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Hoxb3 homeobox B3 IAGP MGI PMID:9441667 NCBI chr11:96,197,927...96,238,756
Ensembl chr11:96,214,152...96,238,756 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:10688203 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Hyal2 hyaluronoglucosaminidase 2 IAGP MGI PMID:18772348 NCBI chr 9:107,445,096...107,449,975
Ensembl chr 9:107,445,144...107,449,978 		JBrowse link
G Pax1 paired box 1 IAGP MGI PMID:9671740 PMID:10364424 PMID:16093716 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215 		JBrowse link
G Phc2 polyhomeotic 2 IAGP MGI PMID:16024804 NCBI chr 4:128,548,448...128,646,674
Ensembl chr 4:128,548,495...128,646,674 		JBrowse link
G Rai1 retinoic acid induced 1 IAGP MGI PMID:15746153 NCBI chr11:59,995,743...60,090,023
Ensembl chr11:59,995,839...60,090,023 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:9240560 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:9240560 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:9240560 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:8270769 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
fusion of axis and occipital bones term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sh3pxd2a SH3 and PX domains 2A IEA MGI NCBI chr19:47,248,613...47,453,053
Ensembl chr19:47,248,613...47,452,840 		JBrowse link
increased cervical vertebrae number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myoz1 myozenin 1 IEA MGI NCBI chr14:20,699,170...20,706,608
Ensembl chr14:20,699,175...20,706,608 		JBrowse link
split cervical atlas term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk10 cyclin dependent kinase 10 IAGP MGI PMID:28886341 NCBI chr 8:123,951,580...123,958,995
Ensembl chr 8:123,951,581...123,958,989 		JBrowse link
G Phc2 polyhomeotic 2 IAGP MGI PMID:16024804 NCBI chr 4:128,548,448...128,646,674
Ensembl chr 4:128,548,495...128,646,674 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:9240560 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:9240560 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:9240560 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
split cervical axis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk10 cyclin dependent kinase 10 IAGP MGI PMID:28886341 NCBI chr 8:123,951,580...123,958,995
Ensembl chr 8:123,951,581...123,958,989 		JBrowse link
G Phc2 polyhomeotic 2 IAGP MGI PMID:16024804 NCBI chr 4:128,548,448...128,646,674
Ensembl chr 4:128,548,495...128,646,674 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:9240560 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:9240560 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:9240560 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 17065
    skeleton phenotype 3394
      abnormal skeleton morphology 3201
        abnormal axial skeleton morphology 1791
          abnormal vertebral column morphology 994
            abnormal vertebrae morphology 669
              abnormal presacral vertebrae morphology 277
                abnormal cervical vertebrae morphology 135
                  abnormal cervical atlas morphology + 58
                  abnormal cervical axis morphology + 42
                  cervical vertebrae degeneration 1
                  cervical vertebral fusion + 50
                  cervical vertebral transformation 45
                  decreased bone mineral density of cervical vertebrae 0
                  decreased cervical vertebrae number 4
                  increased bone mineral density of cervical vertebrae 0
                  increased cervical vertebrae number 1
paths to the root