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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.

Term:abnormal bile duct morphology
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Accession:MP:0002928 term browser browse the term
Definition:any structural anomaly of the channels that secrete bile from the liver to the gall bladder and intestines
Synonyms:exact_synonym: abnormal bile duct;   bile duct dysplasia



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abnormal bile duct morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb4 ATP-binding cassette, sub-family B (MDR/TAP), member 4 IAGP MGI PMID:8106172 PMID:14752830 NCBI chr 5:8,943,614...9,009,226
Ensembl chr 5:8,943,717...9,009,231
JBrowse link
G Anks6 ankyrin repeat and sterile alpha motif domain containing 6 IAGP MGI PMID:32886109 NCBI chr 4:47,015,365...47,057,339
Ensembl chr 4:47,015,669...47,057,427
JBrowse link
G Arl3 ADP-ribosylation factor-like 3 IAGP MGI PMID:16565502 NCBI chr19:46,519,548...46,561,621
Ensembl chr19:46,519,535...46,561,637
JBrowse link
G Bicc1 BicC family RNA binding protein 1 IAGP MGI PMID:8887273 NCBI chr10:70,758,660...70,995,581
Ensembl chr10:70,758,662...70,995,530
JBrowse link
G Casp8 caspase 8 IAGP MGI PMID:20478530 NCBI chr 1:58,834,398...58,886,662
Ensembl chr 1:58,834,533...58,886,662
JBrowse link
G Cbx6 chromobox 6 IEA MGI NCBI chr15:79,708,099...79,718,534
Ensembl chr15:79,708,097...79,718,889
JBrowse link
G Celf4 CUGBP, Elav-like family member 4 IEA MGI NCBI chr18:25,610,677...25,887,577
Ensembl chr18:25,610,689...25,887,214
JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:8605891 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767
JBrowse link
G Chuk conserved helix-loop-helix ubiquitous kinase IAGP MGI PMID:18606991 NCBI chr19:44,061,773...44,095,940
Ensembl chr19:44,061,774...44,095,919
JBrowse link
G Cys1 cystin 1 IAGP MGI PMID:4032601 NCBI chr12:24,715,832...24,731,794
Ensembl chr12:24,715,832...24,731,812
JBrowse link
G Ehbp1l1 EH domain binding protein 1-like 1 IEA MGI NCBI chr19:5,757,397...5,776,504
Ensembl chr19:5,757,404...5,776,345
JBrowse link
G Gak cyclin G associated kinase IAGP MGI PMID:18434600 NCBI chr 5:108,716,973...108,777,643
Ensembl chr 5:108,717,277...108,777,621
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:19551907 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,044,389...113,054,294
JBrowse link
G Hes1 hes family bHLH transcription factor 1 IAGP MGI PMID:19619492 NCBI chr16:29,884,175...29,886,614
Ensembl chr16:29,883,202...29,886,614
JBrowse link
G Ift88 intraflagellar transport 88 IAGP MGI PMID:8191288 PMID:8952527 PMID:10804177 PMID:11773599 NCBI chr14:57,661,519...57,755,393
Ensembl chr14:57,661,519...57,755,393
JBrowse link
G Ikbkb inhibitor of kappaB kinase beta IAGP MGI PMID:18606991 NCBI chr 8:23,149,221...23,196,605
Ensembl chr 8:23,149,228...23,196,605
JBrowse link
G Jag1 jagged 1 IAGP MGI PMID:18365007 PMID:21062863 PMID:21490058 PMID:29162437 NCBI chr 2:136,923,371...136,958,440
Ensembl chr 2:136,923,376...136,958,564
JBrowse link
G Map3k14 mitogen-activated protein kinase kinase kinase 14 IAGP MGI PMID:9620319 NCBI chr11:103,110,590...103,158,227
Ensembl chr11:103,110,588...103,158,298
JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 IAGP MGI PMID:20478530 NCBI chr 4:31,963,659...32,023,470
Ensembl chr 4:31,964,097...32,023,467
JBrowse link
G Mks1 MKS transition zone complex subunit 1 IAGP MGI PMID:19776033 NCBI chr11:87,744,007...87,754,629
Ensembl chr11:87,744,041...87,754,629
JBrowse link
G Ncf1 neutrophil cytosolic factor 1 IAGP MGI PMID:11733538 NCBI chr 5:134,248,907...134,258,479
Ensembl chr 5:134,248,907...134,258,479
JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 IAGP MGI PMID:17137798 NCBI chr18:38,551,960...38,598,250
Ensembl chr18:38,543,449...38,598,356
JBrowse link
G Notch2 notch 2 IAGP MGI PMID:18365007 PMID:21490058 NCBI chr 3:97,920,854...98,057,683
Ensembl chr 3:97,920,843...98,057,677
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting IAGP MGI PMID:9988265 NCBI chr17:24,767,657...24,815,488
Ensembl chr17:24,768,808...24,815,482
JBrowse link
G Pkhd1 polycystic kidney and hepatic disease 1 IAGP MGI PMID:15830394 NCBI chr 1:20,128,003...20,688,306
Ensembl chr 1:20,128,003...20,688,288
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 IAGP MGI PMID:21490058 NCBI chr16:38,345,420...38,370,619
Ensembl chr16:38,345,499...38,370,620
JBrowse link
G Ppp1r8 protein phosphatase 1, regulatory subunit 8 IAGP MGI PMID:27068806 NCBI chr 4:132,554,235...132,570,480
Ensembl chr 4:132,554,240...132,570,480
JBrowse link
G Psph phosphoserine phosphatase IEA MGI NCBI chr 5:129,842,622...129,864,318
Ensembl chr 5:129,842,622...129,864,513
JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:16767220 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560
JBrowse link
G Relb avian reticuloendotheliosis viral (v-rel) oncogene related B IAGP MGI PMID:7834753 NCBI chr 7:19,340,142...19,363,363
Ensembl chr 7:19,340,142...19,363,363
JBrowse link
G Rtn4rl1 reticulon 4 receptor-like 1 IEA MGI NCBI chr11:75,084,819...75,158,595
Ensembl chr11:75,084,609...75,158,595
JBrowse link
G Smad4 SMAD family member 4 IAGP MGI PMID:16767220 NCBI chr18:73,767,861...73,836,862
Ensembl chr18:73,772,080...73,836,851
JBrowse link
G Speer6-ps1 spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1 IAGP MGI PMID:18365007 PMID:18434600 PMID:19551907 PMID:20478530 PMID:20643348 NCBI chr13:3,199,475...3,239,678
Ensembl chr13:3,199,475...3,239,678
JBrowse link
G Tent5c terminal nucleotidyltransferase 5C IEA MGI NCBI chr 3:100,375,373...100,396,508
Ensembl chr 3:100,358,944...100,396,640
JBrowse link
G Xpnpep1 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble IEA MGI NCBI chr19:52,919,710...53,027,093
Ensembl chr19:52,920,357...53,028,645
JBrowse link
G Yap1 yes-associated protein 1 IAGP MGI PMID:20643348 NCBI chr 9:7,932,000...8,004,890
Ensembl chr 9:7,932,000...8,004,597
JBrowse link
abnormal bile duct development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anks6 ankyrin repeat and sterile alpha motif domain containing 6 IAGP MGI PMID:32886109 NCBI chr 4:47,015,365...47,057,339
Ensembl chr 4:47,015,669...47,057,427
JBrowse link
G Arl3 ADP-ribosylation factor-like 3 IAGP MGI PMID:16565502 NCBI chr19:46,519,548...46,561,621
Ensembl chr19:46,519,535...46,561,637
JBrowse link
G B9d1 B9 protein domain 1 IAGP MGI PMID:21763481 NCBI chr11:61,395,970...61,403,757
Ensembl chr11:61,395,970...61,403,757
JBrowse link
G Gpbar1 G protein-coupled bile acid receptor 1 IAGP MGI PMID:16724960 NCBI chr 1:74,317,759...74,318,748
Ensembl chr 1:74,317,709...74,318,783
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:19551907 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,044,389...113,054,294
JBrowse link
G Hes1 hes family bHLH transcription factor 1 IAGP MGI PMID:14702043 PMID:19619492 NCBI chr16:29,884,175...29,886,614
Ensembl chr16:29,883,202...29,886,614
JBrowse link
G Hhex hematopoietically expressed homeobox IAGP MGI PMID:17580084 NCBI chr19:37,423,289...37,429,179
Ensembl chr19:37,423,258...37,429,179
JBrowse link
G Jag1 jagged 1 IAGP MGI PMID:11861489 PMID:18365007 PMID:21062863 PMID:29162437 NCBI chr 2:136,923,371...136,958,440
Ensembl chr 2:136,923,376...136,958,564
JBrowse link
G Jun jun proto-oncogene IAGP MGI PMID:8371760 NCBI chr 4:94,937,273...94,940,459
Ensembl chr 4:94,937,271...94,940,459
JBrowse link
G Mks1 MKS transition zone complex subunit 1 IAGP MGI PMID:19776033 NCBI chr11:87,744,007...87,754,629
Ensembl chr11:87,744,041...87,754,629
JBrowse link
G Notch2 notch 2 IAGP MGI PMID:11861489 PMID:18365007 NCBI chr 3:97,920,854...98,057,683
Ensembl chr 3:97,920,843...98,057,677
JBrowse link
G Onecut1 one cut domain, family member 1 IAGP MGI PMID:11934848 NCBI chr 9:74,769,203...74,796,930
Ensembl chr 9:74,769,203...74,799,063
JBrowse link
G Onecut2 one cut domain, family member 2 IAGP MGI PMID:16103213 NCBI chr18:64,473,103...64,531,559
Ensembl chr18:64,473,091...64,534,058
JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 IAGP MGI PMID:8631275 NCBI chr 5:147,206,907...147,212,658
Ensembl chr 5:147,206,769...147,212,658
JBrowse link
G Pkhd1 polycystic kidney and hepatic disease 1 IAGP MGI PMID:15830394 PMID:17575307 NCBI chr 1:20,128,003...20,688,306
Ensembl chr 1:20,128,003...20,688,288
JBrowse link
G Rpgrip1l Rpgrip1-like IAGP MGI PMID:17558409 NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890
JBrowse link
G Sox17 SRY (sex determining region Y)-box 17 IAGP MGI PMID:19619492 PMID:23293295 NCBI chr 1:4,561,151...4,567,624
Ensembl chr 1:4,561,154...4,567,577
JBrowse link
G Speer6-ps1 spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1 IAGP MGI PMID:19551907 PMID:20643348 NCBI chr13:3,199,475...3,239,678
Ensembl chr13:3,199,475...3,239,678
JBrowse link
G Yap1 yes-associated protein 1 IAGP MGI PMID:20643348 NCBI chr 9:7,932,000...8,004,890
Ensembl chr 9:7,932,000...8,004,597
JBrowse link
abnormal bile duct epithelium morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anks6 ankyrin repeat and sterile alpha motif domain containing 6 IAGP MGI PMID:32886109 NCBI chr 4:47,015,365...47,057,339
Ensembl chr 4:47,015,669...47,057,427
JBrowse link
G Lats1 large tumor suppressor IAGP MGI PMID:26109051 NCBI chr10:7,556,964...7,592,225
Ensembl chr10:7,556,978...7,592,224
JBrowse link
G Lats2 large tumor suppressor 2 IAGP MGI PMID:26109051 NCBI chr14:57,927,119...57,983,669
Ensembl chr14:57,927,119...57,995,845
Ensembl chr14:57,927,119...57,995,845
JBrowse link
G Nf2 neurofibromin 2 IAGP MGI PMID:26109051 NCBI chr11:4,715,845...4,799,544
Ensembl chr11:4,715,845...4,799,536
JBrowse link
G Speer6-ps1 spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1 IAGP MGI PMID:33513427 NCBI chr13:3,199,475...3,239,678
Ensembl chr13:3,199,475...3,239,678
JBrowse link
G Wwtr1 WW domain containing transcription regulator 1 IAGP MGI PMID:26109051 NCBI chr 3:57,363,065...57,483,331
Ensembl chr 3:57,363,070...57,483,331
JBrowse link
G Yap1 yes-associated protein 1 IAGP MGI PMID:26109051 NCBI chr 9:7,932,000...8,004,890
Ensembl chr 9:7,932,000...8,004,597
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A IAGP MGI PMID:33513427 NCBI chr 4:125,012,207...125,021,674
Ensembl chr 4:125,012,216...125,021,633
JBrowse link
abnormal biliary ductule morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bicc1 BicC family RNA binding protein 1 IAGP MGI PMID:11944981 NCBI chr10:70,758,660...70,995,581
Ensembl chr10:70,758,662...70,995,530
JBrowse link
G Zmynd11 zinc finger, MYND domain containing 11 IEA MGI NCBI chr13:9,734,872...9,816,050
Ensembl chr13:9,734,869...9,815,366
JBrowse link
abnormal cholangiocyte morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn2 cellular communication network factor 2 IAGP MGI PMID:26699479 NCBI chr10:24,471,340...24,474,581
Ensembl chr10:24,471,340...24,474,581
JBrowse link
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 IAGP MGI PMID:30635284 NCBI chr11:96,798,251...96,807,359
Ensembl chr11:96,798,252...96,807,322
JBrowse link
G Dennd1a DENN/MADD domain containing 1A IAGP MGI PMID:30884041 NCBI chr 2:37,689,002...38,177,417
Ensembl chr 2:37,689,003...38,177,402
JBrowse link
G Jag1 jagged 1 IAGP MGI PMID:29162437 NCBI chr 2:136,923,371...136,958,440
Ensembl chr 2:136,923,376...136,958,564
JBrowse link
G Mob1a MOB kinase activator 1A IAGP MGI PMID:26699479 NCBI chr 6:83,303,016...83,319,794
Ensembl chr 6:83,302,998...83,320,758
JBrowse link
G Mob1b MOB kinase activator 1B IAGP MGI PMID:26699479 NCBI chr 5:88,868,730...88,906,314
Ensembl chr 5:88,868,714...88,912,079
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel IAGP MGI PMID:20093497 NCBI chr 5:104,599,379...104,653,685
Ensembl chr 5:104,607,316...104,653,685
JBrowse link
G Pnpla2 patatin-like phospholipase domain containing 2 IAGP MGI PMID:21465509 NCBI chr 7:141,035,101...141,040,656
Ensembl chr 7:141,035,111...141,040,656
JBrowse link
G Speer6-ps1 spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1 IAGP MGI PMID:21465509 PMID:26699479 NCBI chr13:3,199,475...3,239,678
Ensembl chr13:3,199,475...3,239,678
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II IAGP MGI PMID:26699479 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428
JBrowse link
G Wwtr1 WW domain containing transcription regulator 1 IAGP MGI PMID:26699479 NCBI chr 3:57,363,065...57,483,331
Ensembl chr 3:57,363,070...57,483,331
JBrowse link
G Yap1 yes-associated protein 1 IAGP MGI PMID:26699479 NCBI chr 9:7,932,000...8,004,890
Ensembl chr 9:7,932,000...8,004,597
JBrowse link
abnormal cholangiocyte primary cilium morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anks6 ankyrin repeat and sterile alpha motif domain containing 6 IAGP MGI PMID:32886109 NCBI chr 4:47,015,365...47,057,339
Ensembl chr 4:47,015,669...47,057,427
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel IAGP MGI PMID:20093497 NCBI chr 5:104,599,379...104,653,685
Ensembl chr 5:104,607,316...104,653,685
JBrowse link
G Pkhd1 polycystic kidney and hepatic disease 1 IAGP MGI PMID:17519956 NCBI chr 1:20,128,003...20,688,306
Ensembl chr 1:20,128,003...20,688,288
JBrowse link
abnormal common bile duct morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 IAGP MGI PMID:19619492 NCBI chr16:29,884,175...29,886,614
Ensembl chr16:29,883,202...29,886,614
JBrowse link
G Morc2a microrchidia 2A IEA MGI NCBI chr11:3,599,132...3,640,477
Ensembl chr11:3,599,191...3,640,477
JBrowse link
G Mybphl myosin binding protein H-like IEA MGI NCBI chr 3:108,272,227...108,287,373
Ensembl chr 3:108,272,227...108,287,373
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting IAGP MGI PMID:18003909 NCBI chr17:24,767,657...24,815,488
Ensembl chr17:24,768,808...24,815,482
JBrowse link
G Sox17 SRY (sex determining region Y)-box 17 IAGP MGI PMID:19619492 NCBI chr 1:4,561,151...4,567,624
Ensembl chr 1:4,561,154...4,567,577
JBrowse link
abnormal cystic duct morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1c coronin, actin binding protein 1C IEA MGI NCBI chr 5:113,980,500...114,046,767
Ensembl chr 5:113,980,497...114,046,819
JBrowse link
G Ehbp1l1 EH domain binding protein 1-like 1 IEA MGI NCBI chr19:5,757,397...5,776,504
Ensembl chr19:5,757,404...5,776,345
JBrowse link
G Hes1 hes family bHLH transcription factor 1 IAGP MGI PMID:14702043 NCBI chr16:29,884,175...29,886,614
Ensembl chr16:29,883,202...29,886,614
JBrowse link
G Hnf1b HNF1 homeobox B IAGP MGI PMID:11934849 NCBI chr11:83,741,035...83,796,743
Ensembl chr11:83,740,889...83,796,645
JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:27032374 NCBI chr 6:145,162,425...145,196,144
Ensembl chr 6:145,162,425...145,195,965
JBrowse link
G Krt19 keratin 19 IAGP MGI PMID:27032374 NCBI chr11:100,031,636...100,036,752
Ensembl chr11:100,031,636...100,039,491
JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:27032374 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560
JBrowse link
G Rala v-ral simian leukemia viral oncogene A (ras related) IEA MGI NCBI chr13:18,055,160...18,118,802
Ensembl chr13:18,055,156...18,118,824
JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:28432216 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254
JBrowse link
G Sox17 SRY (sex determining region Y)-box 17 IAGP MGI PMID:28432216 NCBI chr 1:4,561,151...4,567,624
Ensembl chr 1:4,561,154...4,567,577
JBrowse link
G Thbs1 thrombospondin 1 IAGP MGI PMID:9657149 NCBI chr 2:117,942,357...117,957,614
Ensembl chr 2:117,942,357...117,957,614
JBrowse link
G Trappc9 trafficking protein particle complex 9 IEA MGI NCBI chr15:72,461,469...72,933,086
Ensembl chr15:72,461,469...72,933,053
JBrowse link
G Zmynd11 zinc finger, MYND domain containing 11 IEA MGI NCBI chr13:9,734,872...9,816,050
Ensembl chr13:9,734,869...9,815,366
JBrowse link
abnormal extrahepatic bile duct morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl3 ADP-ribosylation factor-like 3 IAGP MGI PMID:16565502 NCBI chr19:46,519,548...46,561,621
Ensembl chr19:46,519,535...46,561,637
JBrowse link
G Hes1 hes family bHLH transcription factor 1 IAGP MGI PMID:19619492 NCBI chr16:29,884,175...29,886,614
Ensembl chr16:29,883,202...29,886,614
JBrowse link
G Hhex hematopoietically expressed homeobox IAGP MGI PMID:17580084 NCBI chr19:37,423,289...37,429,179
Ensembl chr19:37,423,258...37,429,179
JBrowse link
G Hnf1b HNF1 homeobox B IAGP MGI PMID:11934849 NCBI chr11:83,741,035...83,796,743
Ensembl chr11:83,740,889...83,796,645
JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:27032374 NCBI chr 6:145,162,425...145,196,144
Ensembl chr 6:145,162,425...145,195,965
JBrowse link
G Krt19 keratin 19 IAGP MGI PMID:27032374 NCBI chr11:100,031,636...100,036,752
Ensembl chr11:100,031,636...100,039,491
JBrowse link
G Pkhd1 polycystic kidney and hepatic disease 1 IAGP MGI PMID:18286309 NCBI chr 1:20,128,003...20,688,306
Ensembl chr 1:20,128,003...20,688,288
JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:27032374 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560
JBrowse link
G Sox17 SRY (sex determining region Y)-box 17 IAGP MGI PMID:23293295 NCBI chr 1:4,561,151...4,567,624
Ensembl chr 1:4,561,154...4,567,577
JBrowse link
abnormal hepatic duct morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hhex hematopoietically expressed homeobox IAGP MGI PMID:17580084 NCBI chr19:37,423,289...37,429,179
Ensembl chr19:37,423,258...37,429,179
JBrowse link
G Pkhd1 polycystic kidney and hepatic disease 1 IAGP MGI PMID:18286309 NCBI chr 1:20,128,003...20,688,306
Ensembl chr 1:20,128,003...20,688,288
JBrowse link
G Speer6-ps1 spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1 IAGP MGI PMID:33184034 NCBI chr13:3,199,475...3,239,678
Ensembl chr13:3,199,475...3,239,678
JBrowse link
G Tjp1 tight junction protein 1 IAGP MGI PMID:33184034 NCBI chr 7:64,945,913...65,177,629
Ensembl chr 7:64,945,913...65,177,529
JBrowse link
G Tjp2 tight junction protein 2 IAGP MGI PMID:33184034 NCBI chr19:24,071,860...24,202,492
Ensembl chr19:24,071,869...24,202,394
JBrowse link
abnormal interlobular bile duct morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bicc1 BicC family RNA binding protein 1 IAGP MGI PMID:11944981 NCBI chr10:70,758,660...70,995,581
Ensembl chr10:70,758,662...70,995,530
JBrowse link
G Hnf1b HNF1 homeobox B IAGP MGI PMID:11934849 NCBI chr11:83,741,035...83,796,743
Ensembl chr11:83,740,889...83,796,645
JBrowse link
abnormal intrahepatic bile duct morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxm1 forkhead box M1 IAGP MGI PMID:15531365 NCBI chr 6:128,339,957...128,352,849
Ensembl chr 6:128,339,930...128,353,109
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:19551907 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,044,389...113,054,294
JBrowse link
G Hhex hematopoietically expressed homeobox IAGP MGI PMID:17580084 NCBI chr19:37,423,289...37,429,179
Ensembl chr19:37,423,258...37,429,179
JBrowse link
G Hnf1b HNF1 homeobox B IAGP MGI PMID:11934849 NCBI chr11:83,741,035...83,796,743
Ensembl chr11:83,740,889...83,796,645
JBrowse link
G Pkhd1 polycystic kidney and hepatic disease 1 IAGP MGI PMID:18286309 NCBI chr 1:20,128,003...20,688,306
Ensembl chr 1:20,128,003...20,688,288
JBrowse link
G Speer6-ps1 spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1 IAGP MGI PMID:19551907 NCBI chr13:3,199,475...3,239,678
Ensembl chr13:3,199,475...3,239,678
JBrowse link
bile duct epithelium hyperplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:8605891 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767
JBrowse link
G Ppp1r8 protein phosphatase 1, regulatory subunit 8 IAGP MGI PMID:27068806 NCBI chr 4:132,554,235...132,570,480
Ensembl chr 4:132,554,240...132,570,480
JBrowse link
bile duct hyperplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B9d1 B9 protein domain 1 IAGP MGI PMID:21763481 NCBI chr11:61,395,970...61,403,757
Ensembl chr11:61,395,970...61,403,757
JBrowse link
G Bicc1 BicC family RNA binding protein 1 IAGP MGI PMID:8476712 NCBI chr10:70,758,660...70,995,581
Ensembl chr10:70,758,662...70,995,530
JBrowse link
G Chd2 chromodomain helicase DNA binding protein 2 IAGP MGI PMID:16810678 NCBI chr 7:73,076,400...73,191,494
Ensembl chr 7:73,076,386...73,191,578
JBrowse link
G Fbxw7 F-box and WD-40 domain protein 7 IAGP MGI PMID:29386660 NCBI chr 3:84,721,901...84,886,505
Ensembl chr 3:84,722,575...84,886,505
JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:27032374 PMID:29386660 NCBI chr 6:145,162,425...145,196,144
Ensembl chr 6:145,162,425...145,195,965
JBrowse link
G Map3k14 mitogen-activated protein kinase kinase kinase 14 IAGP MGI PMID:9620319 NCBI chr11:103,110,590...103,158,227
Ensembl chr11:103,110,588...103,158,298
JBrowse link
G Nf2 neurofibromin 2 IAGP MGI PMID:20643348 NCBI chr11:4,715,845...4,799,544
Ensembl chr11:4,715,845...4,799,536
JBrowse link
G Pkhd1 polycystic kidney and hepatic disease 1 IAGP MGI PMID:17575307 NCBI chr 1:20,128,003...20,688,306
Ensembl chr 1:20,128,003...20,688,288
JBrowse link
G Ppp1r8 protein phosphatase 1, regulatory subunit 8 IAGP MGI PMID:27068806 NCBI chr 4:132,554,235...132,570,480
Ensembl chr 4:132,554,240...132,570,480
JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:16767220 PMID:27032374 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560
JBrowse link
G Rassf1 Ras association (RalGDS/AF-6) domain family member 1 IAGP MGI PMID:26980762 NCBI chr 9:107,428,633...107,439,466
Ensembl chr 9:107,428,754...107,439,466
JBrowse link
G Sav1 salvador family WW domain containing 1 IAGP MGI PMID:26980762 NCBI chr12:70,011,786...70,034,915
Ensembl chr12:70,011,786...70,033,776
JBrowse link
G Speer6-ps1 spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1 IAGP MGI PMID:20643348 PMID:27032374 PMID:29386660 PMID:33513427 NCBI chr13:3,199,475...3,239,678
Ensembl chr13:3,199,475...3,239,678
JBrowse link
G Tnip1 TNFAIP3 interacting protein 1 IAGP MGI PMID:21606507 NCBI chr11:54,801,613...54,853,766
Ensembl chr11:54,801,611...54,853,743
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A IAGP MGI PMID:33513427 NCBI chr 4:125,012,207...125,021,674
Ensembl chr 4:125,012,216...125,021,633
JBrowse link
bile duct proliferation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb4 ATP-binding cassette, sub-family B (MDR/TAP), member 4 IAGP MGI PMID:7977654 PMID:25068656 NCBI chr 5:8,943,614...9,009,226
Ensembl chr 5:8,943,717...9,009,231
JBrowse link
G Acox2 acyl-Coenzyme A oxidase 2, branched chain IAGP MGI PMID:35351852 NCBI chr14:14,210,406...14,244,262
Ensembl chr14:14,210,420...14,244,262
JBrowse link
G Atp8b1 ATPase, class I, type 8B, member 1 IAGP MGI PMID:25068656 NCBI chr18:64,662,050...64,794,342
Ensembl chr18:64,662,038...64,794,338
JBrowse link
G Casp8 caspase 8 IAGP MGI PMID:20478530 NCBI chr 1:58,834,398...58,886,662
Ensembl chr 1:58,834,533...58,886,662
JBrowse link
G Dzip1l DAZ interacting protein 1-like IAGP MGI PMID:28530676 NCBI chr 9:99,511,448...99,552,128
Ensembl chr 9:99,511,549...99,551,309
JBrowse link
G Jag1 jagged 1 IAGP MGI PMID:17366661 NCBI chr 2:136,923,371...136,958,440
Ensembl chr 2:136,923,376...136,958,564
JBrowse link
G Map3k14 mitogen-activated protein kinase kinase kinase 14 IAGP MGI PMID:9620319 NCBI chr11:103,110,590...103,158,227
Ensembl chr11:103,110,588...103,158,298
JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 IAGP MGI PMID:20478530 NCBI chr 4:31,963,659...32,023,470
Ensembl chr 4:31,964,097...32,023,467
JBrowse link
G Mir122 microRNA 122 IAGP MGI PMID:22820288 NCBI chr18:65,381,932...65,381,997
Ensembl chr18:65,381,932...65,381,997
JBrowse link
G Nf2 neurofibromin 2 IAGP MGI PMID:20643348 NCBI chr11:4,715,845...4,799,544
Ensembl chr11:4,715,845...4,799,536
JBrowse link
G Pex1 peroxisomal biogenesis factor 1 IAGP MGI PMID:24503136 PMID:31207289 NCBI chr 5:3,646,066...3,687,230
Ensembl chr 5:3,646,066...3,687,232
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel IAGP MGI PMID:9568711 PMID:20093497 NCBI chr 5:104,599,379...104,653,685
Ensembl chr 5:104,607,316...104,653,685
JBrowse link
G Pkhd1 polycystic kidney and hepatic disease 1 IAGP MGI PMID:17519956 PMID:18202188 PMID:30600684 NCBI chr 1:20,128,003...20,688,306
Ensembl chr 1:20,128,003...20,688,288
JBrowse link
G Por cytochrome p450 oxidoreductase IAGP MGI PMID:25068656 NCBI chr 5:135,698,894...135,764,180
Ensembl chr 5:135,698,887...135,764,180
JBrowse link
G Ppp1r8 protein phosphatase 1, regulatory subunit 8 IAGP MGI PMID:27068806 NCBI chr 4:132,554,235...132,570,480
Ensembl chr 4:132,554,240...132,570,480
JBrowse link
G Speer6-ps1 spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1 IAGP MGI PMID:20643348 PMID:22820288 PMID:25068656 PMID:28919113 NCBI chr13:3,199,475...3,239,678
Ensembl chr13:3,199,475...3,239,678
JBrowse link
G Tmem30a transmembrane protein 30A IAGP MGI PMID:28919113 NCBI chr 9:79,676,223...79,700,712
Ensembl chr 9:79,676,225...79,700,789
JBrowse link
biliary atresia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox17 SRY (sex determining region Y)-box 17 IAGP MGI PMID:28432216 NCBI chr 1:4,561,151...4,567,624
Ensembl chr 1:4,561,154...4,567,577
JBrowse link
biliary cyst term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn4 actinin alpha 4 IEA MGI NCBI chr 7:28,592,673...28,661,799
Ensembl chr 7:28,592,673...28,661,765
JBrowse link
G Akt1 thymoma viral proto-oncogene 1 IAGP MGI PMID:31194862 NCBI chr12:112,620,255...112,641,318
Ensembl chr12:112,620,255...112,641,318
JBrowse link
G Auts2 autism susceptibility candidate 2 IEA MGI NCBI chr 5:131,466,171...132,572,059
Ensembl chr 5:131,466,171...132,572,183
JBrowse link
G Bicc1 BicC family RNA binding protein 1 IAGP MGI PMID:11944981 PMID:20215348 NCBI chr10:70,758,660...70,995,581
Ensembl chr10:70,758,662...70,995,530
JBrowse link
G Capza2 capping actin protein of muscle Z-line subunit alpha 2 IEA MGI NCBI chr 6:17,637,009...17,666,971
Ensembl chr 6:17,636,233...17,666,971
JBrowse link
G Cys1 cystin 1 IAGP MGI PMID:8800407 PMID:11004214 NCBI chr12:24,715,832...24,731,794
Ensembl chr12:24,715,832...24,731,812
JBrowse link
G Gas2l2 growth arrest-specific 2 like 2 IEA MGI NCBI chr11:83,312,461...83,320,347
Ensembl chr11:83,312,728...83,320,281
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:31194862 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,044,389...113,054,294
JBrowse link
G Hhex hematopoietically expressed homeobox IAGP MGI PMID:17580084 NCBI chr19:37,423,289...37,429,179
Ensembl chr19:37,423,258...37,429,179
JBrowse link
G Onecut1 one cut domain, family member 1 IAGP MGI PMID:16103213 NCBI chr 9:74,769,203...74,796,930
Ensembl chr 9:74,769,203...74,799,063
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting IAGP MGI PMID:15496422 NCBI chr17:24,767,657...24,815,488
Ensembl chr17:24,768,808...24,815,482
JBrowse link
G Pkhd1 polycystic kidney and hepatic disease 1 IAGP MGI PMID:17575307 PMID:18202188 PMID:30600684 NCBI chr 1:20,128,003...20,688,306
Ensembl chr 1:20,128,003...20,688,288
JBrowse link
G Syt1 synaptotagmin I IEA MGI NCBI chr10:108,333,511...108,846,852
Ensembl chr10:108,333,511...108,846,843
JBrowse link
dilated bile duct term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb4 ATP-binding cassette, sub-family B (MDR/TAP), member 4 IAGP MGI PMID:8106172 PMID:14752830 NCBI chr 5:8,943,614...9,009,226
Ensembl chr 5:8,943,717...9,009,231
JBrowse link
G Akt1 thymoma viral proto-oncogene 1 IAGP MGI PMID:31194862 NCBI chr12:112,620,255...112,641,318
Ensembl chr12:112,620,255...112,641,318
JBrowse link
G Anks6 ankyrin repeat and sterile alpha motif domain containing 6 IAGP MGI PMID:32886109 NCBI chr 4:47,015,365...47,057,339
Ensembl chr 4:47,015,669...47,057,427
JBrowse link
G Bicc1 BicC family RNA binding protein 1 IAGP MGI PMID:7723240 NCBI chr10:70,758,660...70,995,581
Ensembl chr10:70,758,662...70,995,530
JBrowse link
G Coro1c coronin, actin binding protein 1C IEA MGI NCBI chr 5:113,980,500...114,046,767
Ensembl chr 5:113,980,497...114,046,819
JBrowse link
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 IEA MGI NCBI chr 9:57,905,307...57,934,314
Ensembl chr 9:57,913,694...57,934,306
JBrowse link
G Cys1 cystin 1 IAGP MGI PMID:11004214 NCBI chr12:24,715,832...24,731,794
Ensembl chr12:24,715,832...24,731,812
JBrowse link
G Fbxw7 F-box and WD-40 domain protein 7 IAGP MGI PMID:29386660 NCBI chr 3:84,721,901...84,886,505
Ensembl chr 3:84,722,575...84,886,505
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:31194862 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,044,389...113,054,294
JBrowse link
G Jag1 jagged 1 IAGP MGI PMID:17366661 NCBI chr 2:136,923,371...136,958,440
Ensembl chr 2:136,923,376...136,958,564
JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:29386660 NCBI chr 6:145,162,425...145,196,144
Ensembl chr 6:145,162,425...145,195,965
JBrowse link
G Map3k14 mitogen-activated protein kinase kinase kinase 14 IAGP MGI PMID:9620319 NCBI chr11:103,110,590...103,158,227
Ensembl chr11:103,110,588...103,158,298
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting IAGP MGI PMID:15496422 NCBI chr17:24,767,657...24,815,488
Ensembl chr17:24,768,808...24,815,482
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel IAGP MGI PMID:18782757 NCBI chr 5:104,599,379...104,653,685
Ensembl chr 5:104,607,316...104,653,685
JBrowse link
G Pkhd1 polycystic kidney and hepatic disease 1 IAGP MGI PMID:17519956 PMID:18286309 PMID:30600684 NCBI chr 1:20,128,003...20,688,306
Ensembl chr 1:20,128,003...20,688,288
JBrowse link
G Ppp1r8 protein phosphatase 1, regulatory subunit 8 IAGP MGI PMID:27068806 NCBI chr 4:132,554,235...132,570,480
Ensembl chr 4:132,554,240...132,570,480
JBrowse link
G Pth1r parathyroid hormone 1 receptor IEA MGI NCBI chr 9:110,551,132...110,576,213
Ensembl chr 9:110,551,153...110,576,213
JBrowse link
G Sh3pxd2a SH3 and PX domains 2A IEA MGI NCBI chr19:47,248,613...47,453,053
Ensembl chr19:47,248,613...47,452,840
JBrowse link
G Speer6-ps1 spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1 IAGP MGI PMID:29386660 NCBI chr13:3,199,475...3,239,678
Ensembl chr13:3,199,475...3,239,678
JBrowse link
G Syt1 synaptotagmin I IEA MGI NCBI chr10:108,333,511...108,846,852
Ensembl chr10:108,333,511...108,846,843
JBrowse link
G Traf6 TNF receptor-associated factor 6 IEA MGI NCBI chr 2:101,508,765...101,532,013
Ensembl chr 2:101,508,774...101,532,014
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 15936
    endocrine/exocrine gland phenotype 3134
      abnormal gland morphology 2909
        abnormal bile duct morphology 95
          abnormal bile duct development 19
          abnormal bile duct epithelium morphology + 10
          abnormal cholangiocyte morphology + 14
          abnormal extrahepatic bile duct morphology + 19
          abnormal hepatic duct morphology 5
          abnormal intrahepatic bile duct morphology + 8
          bile duct hyperplasia 15
          bile duct proliferation 17
          biliary atresia 1
          biliary cyst 13
          dilated bile duct 22
Path 2
Term Annotations click to browse term
  mammalian phenotype 15936
    liver/biliary system phenotype 1824
      abnormal hepatobiliary system morphology 1662
        abnormal biliary tract morphology 170
          abnormal bile duct morphology 95
            abnormal bile duct development 19
            abnormal bile duct epithelium morphology + 10
            abnormal cholangiocyte morphology + 14
            abnormal extrahepatic bile duct morphology + 19
            abnormal hepatic duct morphology 5
            abnormal intrahepatic bile duct morphology + 8
            bile duct hyperplasia 15
            bile duct proliferation 17
            biliary atresia 1
            biliary cyst 13
            dilated bile duct 22
paths to the root